Wall clock time and date at job start Tue Mar 31 2020 10:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99827 * 2 1 4 4 H 1.48493 * 109.47160 * 269.99901 * 3 2 1 5 5 H 1.48500 * 109.47272 * 30.00339 * 3 2 1 6 6 H 1.48507 * 109.46781 * 150.00068 * 3 2 1 7 7 C 1.37876 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99588 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00064 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.46896 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46712 * 180.94538 * 10 9 7 12 12 C 1.46877 * 124.37438 * 84.40470 * 11 10 9 13 13 C 1.54705 * 105.51996 * 163.19357 * 12 11 10 14 14 C 1.53623 * 101.51485 * 24.52573 * 13 12 11 15 15 C 1.53893 * 110.67368 * 215.71848 * 14 13 12 16 16 C 1.55329 * 101.53278 * 203.19484 * 15 14 13 17 17 C 1.54404 * 103.13317 * 34.59019 * 16 15 14 18 18 N 1.46719 * 111.40416 * 97.92796 * 14 13 12 19 19 C 1.39671 * 110.99747 * 265.42823 * 18 14 13 20 20 C 1.38915 * 120.07179 * 279.75830 * 19 18 14 21 21 C 1.38108 * 119.92419 * 179.76835 * 20 19 18 22 22 C 1.38287 * 120.07392 * 0.51101 * 21 20 19 23 23 C 1.38292 * 120.14782 * 359.74534 * 22 21 20 24 24 C 1.38105 * 120.07749 * 359.97438 * 23 22 21 25 25 C 1.34754 * 124.37059 * 264.42554 * 11 10 9 26 26 O 1.21275 * 125.13093 * 1.01392 * 25 11 10 27 27 H 0.97000 * 119.99848 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46910 * 60.00593 * 9 7 2 29 29 H 1.08997 * 109.47367 * 300.00693 * 9 7 2 30 30 H 1.08999 * 109.46523 * 60.94734 * 10 9 7 31 31 H 1.08994 * 109.47386 * 300.94958 * 10 9 7 32 32 H 1.09001 * 110.23666 * 44.18600 * 12 11 10 33 33 H 1.08997 * 110.23407 * 282.20756 * 12 11 10 34 34 H 1.08998 * 111.01698 * 266.46364 * 13 12 11 35 35 H 1.09000 * 111.04443 * 142.59274 * 13 12 11 36 36 H 1.08997 * 111.01296 * 321.25659 * 15 14 13 37 37 H 1.09000 * 111.01189 * 85.09542 * 15 14 13 38 38 H 1.08995 * 110.68352 * 276.17716 * 16 15 14 39 39 H 1.09007 * 110.67996 * 153.00237 * 16 15 14 40 40 H 1.09002 * 109.89205 * 218.41579 * 17 16 15 41 41 H 1.08994 * 109.89499 * 97.20356 * 17 16 15 42 42 H 1.08000 * 120.04099 * 0.02562 * 20 19 18 43 43 H 1.07991 * 119.96643 * 180.25674 * 21 20 19 44 44 H 1.07994 * 119.92799 * 179.71819 * 22 21 20 45 45 H 1.07996 * 119.96137 * 180.02562 * 23 22 21 46 46 H 1.07991 * 120.03768 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 7 5.4865 -2.6365 0.0236 12 6 6.2973 -2.5236 1.2430 13 6 7.7150 -2.9959 0.8426 14 6 7.7114 -2.7288 -0.6702 15 6 8.5075 -3.8147 -1.4155 16 6 8.8906 -3.0743 -2.7261 17 6 9.1058 -1.6191 -2.2570 18 7 8.3637 -1.4542 -0.9905 19 6 7.4264 -0.4235 -1.0900 20 6 6.6839 -0.2678 -2.2537 21 6 5.7545 0.7495 -2.3470 22 6 5.5702 1.6191 -1.2877 23 6 6.3115 1.4702 -0.1298 24 6 7.2384 0.4515 -0.0276 25 6 6.2639 -2.7397 -1.0722 26 8 5.8566 -2.8276 -2.2111 27 1 -0.4850 0.8401 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6718 -3.1463 -0.8963 31 1 3.6448 -3.1543 0.8834 32 1 5.8930 -3.1658 2.0255 33 1 6.3265 -1.4880 1.5818 34 1 7.8471 -4.0574 1.0520 35 1 8.4809 -2.4027 1.3424 36 1 9.3968 -4.1017 -0.8545 37 1 7.8827 -4.6830 -1.6247 38 1 8.0783 -3.1291 -3.4508 39 1 9.8100 -3.4838 -3.1449 40 1 8.7200 -0.9272 -3.0057 41 1 10.1674 -1.4359 -2.0913 42 1 6.8302 -0.9440 -3.0830 43 1 5.1740 0.8686 -3.2498 44 1 4.8460 2.4165 -1.3650 45 1 6.1648 2.1507 0.6958 46 1 7.8172 0.3360 0.8768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274769609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:34 Heat of formation + Delta-G solvation = -4.146218 kcal Electronic energy + Delta-G solvation = -28576.037153 eV Core-core repulsion = 25043.967780 eV Total energy + Delta-G solvation = -3532.069373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.81819 -39.91274 -38.50813 -37.49225 -35.54624 -33.85188 -33.53045 -31.91301 -31.07224 -29.38644 -28.90328 -27.08309 -24.90693 -23.62337 -23.44920 -23.07494 -22.09505 -21.38017 -20.02487 -19.08518 -18.65215 -17.61991 -17.26765 -16.77437 -16.54896 -16.07503 -15.90119 -15.67250 -15.24087 -15.01595 -14.89084 -14.76562 -14.52818 -14.27449 -14.24939 -13.99043 -13.65747 -13.38827 -13.15269 -13.08776 -12.97308 -12.65914 -12.40609 -12.27169 -12.24624 -12.05983 -11.89772 -11.85255 -11.68698 -11.67720 -11.50054 -10.84457 -10.82420 -9.93513 -9.85256 -9.57235 -9.26935 -8.35194 -6.40018 0.26973 0.44105 1.28005 1.29842 1.43753 1.51406 2.12291 2.30908 2.69054 2.82598 3.00055 3.29948 3.49234 3.69310 3.89349 3.97632 3.99839 4.06997 4.10389 4.17364 4.25889 4.32527 4.46003 4.50109 4.53965 4.62346 4.70952 4.72309 4.78276 4.79071 4.83842 4.94234 5.01418 5.04112 5.13248 5.15385 5.18830 5.28705 5.32724 5.37905 5.46152 5.50004 5.56552 5.72640 5.73451 5.82953 6.18727 6.28014 6.31460 6.66342 7.20646 7.25977 8.80442 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017089 B = 0.006036 C = 0.005266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.049946 B = 4637.580098 C = 5316.295476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.011 3.989 3 Si 0.936 3.064 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.228 1.228 7 C -0.530 4.530 8 H 0.035 0.965 9 C 0.000 4.000 10 C 0.146 3.854 11 N -0.611 5.611 12 C 0.088 3.912 13 C -0.102 4.102 14 C 0.069 3.931 15 C -0.100 4.100 16 C -0.138 4.138 17 C 0.035 3.965 18 N -0.448 5.448 19 C 0.068 3.932 20 C -0.138 4.138 21 C -0.128 4.128 22 C -0.134 4.134 23 C -0.118 4.118 24 C -0.090 4.090 25 C 0.497 3.503 26 O -0.569 6.569 27 H 0.266 0.734 28 H 0.023 0.977 29 H 0.004 0.996 30 H 0.046 0.954 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.121 0.879 37 H 0.069 0.931 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.049 0.951 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.142 0.858 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.276 -3.222 2.596 25.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.186 4.186 3 Si 0.759 3.241 4 H -0.199 1.199 5 H -0.213 1.213 6 H -0.150 1.150 7 C -0.568 4.568 8 H 0.053 0.947 9 C -0.039 4.039 10 C 0.024 3.976 11 N -0.343 5.343 12 C -0.034 4.034 13 C -0.139 4.139 14 C -0.023 4.023 15 C -0.138 4.138 16 C -0.176 4.176 17 C -0.092 4.092 18 N -0.169 5.169 19 C -0.026 4.026 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.152 4.152 23 C -0.137 4.137 24 C -0.109 4.109 25 C 0.283 3.717 26 O -0.448 6.448 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.100 0.900 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.130 0.870 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.125 0.875 40 H 0.068 0.932 41 H 0.130 0.870 42 H 0.131 0.869 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.160 0.840 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 25.196 -3.061 2.436 25.498 hybrid contribution -1.905 0.770 -1.322 2.443 sum 23.291 -2.291 1.115 23.430 Atomic orbital electron populations 1.70058 1.08200 1.28086 1.52520 1.25901 0.95511 1.03252 0.93948 0.85950 0.80398 0.78539 0.79167 1.19886 1.21291 1.15018 1.21308 0.91569 0.93303 1.50634 0.94673 1.19597 0.93771 0.94310 0.96193 1.21150 0.77422 0.97830 1.01228 1.48623 1.06042 1.70731 1.08917 1.22489 0.91519 1.02533 0.86865 1.22653 0.95804 1.04461 0.91024 1.22277 0.89101 0.91438 0.99452 1.22575 1.00295 0.95409 0.95558 1.22831 1.02531 0.94636 0.97614 1.23228 1.00190 0.97074 0.88661 1.61431 1.21166 1.01166 1.33098 1.18997 0.94318 0.95314 0.93941 1.21698 0.96731 0.97835 0.99509 1.21060 0.98254 0.96017 0.99314 1.21282 0.99625 0.99758 0.94529 1.21320 0.95857 0.98995 0.97503 1.21107 0.97974 0.93215 0.98586 1.21560 0.90632 0.75063 0.84420 1.90632 1.80348 1.51886 1.21943 0.92528 0.95853 0.97726 0.93515 0.90035 0.88496 0.91298 0.86960 0.85738 0.86044 0.91248 0.93485 0.87527 0.93227 0.87025 0.86940 0.87287 0.86976 0.83972 0.82794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.86 13.96 21.45 0.30 -60.56 16 2 C 0.01 0.67 5.47 84.65 0.46 1.13 16 3 Si 0.94 45.33 25.46 68.60 1.75 47.07 16 4 H -0.27 -13.05 7.07 99.48 0.70 -12.34 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.23 -9.88 6.31 99.48 0.63 -9.25 16 7 C -0.53 -31.44 9.66 25.60 0.25 -31.19 16 8 H 0.03 2.27 7.99 -2.91 -0.02 2.25 16 9 C 0.00 -0.02 4.37 29.85 0.13 0.11 16 10 C 0.15 6.14 5.93 86.38 0.51 6.65 16 11 N -0.61 -20.66 2.94 -818.16 -2.41 -23.06 16 12 C 0.09 2.05 7.14 86.89 0.62 2.67 16 13 C -0.10 -1.68 6.41 31.38 0.20 -1.48 16 14 C 0.07 1.59 0.71 3.18 0.00 1.59 16 15 C -0.10 -1.83 5.81 31.70 0.18 -1.65 16 16 C -0.14 -2.68 6.64 31.87 0.21 -2.46 16 17 C 0.03 0.71 6.34 86.62 0.55 1.26 16 18 N -0.45 -10.39 4.83 -646.19 -3.12 -13.51 16 19 C 0.07 1.99 3.81 38.22 0.15 2.13 16 20 C -0.14 -4.78 6.23 22.40 0.14 -4.64 16 21 C -0.13 -4.70 9.49 22.25 0.21 -4.49 16 22 C -0.13 -4.65 8.74 22.29 0.19 -4.45 16 23 C -0.12 -3.52 9.98 22.25 0.22 -3.30 16 24 C -0.09 -2.43 8.96 22.40 0.20 -2.22 16 25 C 0.50 16.95 4.50 87.51 0.39 17.35 16 26 O -0.57 -24.27 14.40 -3.01 -0.04 -24.31 16 27 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 28 H 0.02 1.10 7.20 -2.38 -0.02 1.08 16 29 H 0.00 0.23 6.95 -2.39 -0.02 0.21 16 30 H 0.05 2.20 7.83 -2.39 -0.02 2.18 16 31 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 32 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.07 1.65 7.17 -2.39 -0.02 1.63 16 34 H 0.11 1.31 7.92 -2.39 -0.02 1.29 16 35 H 0.12 1.52 8.07 -2.39 -0.02 1.50 16 36 H 0.12 1.37 8.07 -2.39 -0.02 1.35 16 37 H 0.07 1.43 8.00 -2.39 -0.02 1.41 16 38 H 0.05 1.22 7.58 -2.39 -0.02 1.21 16 39 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.05 1.20 5.92 -2.39 -0.01 1.19 16 41 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 42 H 0.11 4.15 5.90 -2.91 -0.02 4.14 16 43 H 0.11 4.01 8.06 -2.92 -0.02 3.99 16 44 H 0.11 3.85 7.05 -2.91 -0.02 3.83 16 45 H 0.14 3.54 8.06 -2.91 -0.02 3.51 16 46 H 0.15 3.17 8.06 -2.92 -0.02 3.15 16 Total: -1.00 -76.65 352.96 1.98 -74.67 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.88 Total: 22.69 kcal Atomic # 6 Polarization: -27.61 SS G_CDS: 4.63 Total: -22.98 kcal Atomic # 7 Polarization: -91.91 SS G_CDS: -5.23 Total: -97.14 kcal Atomic # 8 Polarization: -24.27 SS G_CDS: -0.04 Total: -24.31 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.75 Total: 47.07 kcal Total: -76.65 1.98 -74.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274769609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.519 kcal (2) G-P(sol) polarization free energy of solvation -76.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds