Wall clock time and date at job start Tue Mar 31 2020 11:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38347 * 119.85369 * 2 1 4 4 C 1.37979 * 120.13866 * 180.02562 * 3 2 1 5 5 C 1.39541 * 119.85262 * 359.97438 * 4 3 2 6 6 C 1.47819 * 120.13398 * 180.02562 * 5 4 3 7 7 C 1.32565 * 119.99850 * 38.89702 * 6 5 4 8 8 C 1.50697 * 120.00223 * 7.58026 * 7 6 5 9 9 C 1.50707 * 109.46842 * 127.47026 * 8 7 6 10 10 O 1.21274 * 119.99753 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99833 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99823 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.92285 * 328.90956 * 12 11 9 14 14 C 1.55158 * 111.00458 * 205.00110 * 12 11 9 15 15 C 1.54317 * 103.10388 * 277.52082 * 14 12 11 16 16 N 1.47020 * 107.27267 * 337.71524 * 15 14 12 17 17 C 1.36937 * 125.65354 * 178.90215 * 16 15 14 18 18 H 1.08001 * 120.00613 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99501 * 0.03405 * 17 16 15 20 20 N 1.31613 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47062 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47199 * 119.99456 * 21 19 17 24 24 H 1.48495 * 109.47114 * 239.99835 * 21 19 17 25 25 C 1.47426 * 108.70264 * 358.94157 * 16 15 14 26 26 C 1.39527 * 119.71891 * 0.27758 * 5 4 3 27 27 C 1.37976 * 119.85894 * 359.44683 * 26 5 4 28 28 H 1.08997 * 109.47282 * 89.99544 * 1 2 3 29 29 H 1.09000 * 109.47021 * 210.00119 * 1 2 3 30 30 H 1.09003 * 109.47174 * 329.99480 * 1 2 3 31 31 H 1.08000 * 119.93367 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.07057 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.99706 * 218.88789 * 6 5 4 34 34 H 1.07999 * 119.99396 * 187.59039 * 7 6 5 35 35 H 1.09000 * 109.47532 * 7.47092 * 8 7 6 36 36 H 1.09000 * 109.47086 * 247.46475 * 8 7 6 37 37 H 0.96999 * 119.99604 * 0.02562 * 11 9 8 38 38 H 1.09005 * 110.72021 * 159.06604 * 14 12 11 39 39 H 1.09000 * 110.71654 * 35.97664 * 14 12 11 40 40 H 1.08996 * 109.88209 * 97.13684 * 15 14 12 41 41 H 1.09000 * 109.88248 * 218.30154 * 15 14 12 42 42 H 0.97000 * 119.99926 * 180.02562 * 20 19 17 43 43 H 1.09006 * 110.36679 * 142.95910 * 25 16 15 44 44 H 1.08994 * 110.36976 * 265.28405 * 25 16 15 45 45 H 1.08007 * 120.07014 * 179.72052 * 26 5 4 46 46 H 1.07997 * 119.93110 * 180.27583 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2067 -0.0005 5 6 4.2760 0.0000 -0.0005 6 6 5.7542 0.0001 -0.0005 7 6 6.4170 0.8936 0.7204 8 6 5.6733 1.7967 1.6703 9 6 6.2996 1.7116 3.0384 10 8 7.2554 0.9885 3.2238 11 7 5.7976 2.4392 4.0558 12 6 6.4061 2.3561 5.3858 13 1 6.8283 1.3663 5.5595 14 6 5.3809 2.7251 6.4904 15 6 5.4215 4.2677 6.5041 16 7 6.7101 4.6756 5.9256 17 6 7.1283 5.9661 5.7385 18 1 8.0969 6.1622 5.3030 19 6 6.3071 7.0223 6.1089 20 7 5.1265 6.7834 6.6393 21 14 6.8777 8.7827 5.8545 22 1 8.2325 8.7809 5.2462 23 1 5.9304 9.4846 4.9518 24 1 6.9244 9.4820 7.1636 25 6 7.4771 3.4652 5.5791 26 6 3.5754 -1.2066 -0.0059 27 6 2.1957 -1.1998 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6522 2.1332 0.0004 32 1 4.1119 2.1440 -0.0001 33 1 6.2942 -0.7279 -0.5877 34 1 7.4898 0.9744 0.6267 35 1 4.6307 1.4840 1.7279 36 1 5.7251 2.8243 1.3103 37 1 5.0330 3.0173 3.9075 38 1 5.6913 2.3225 7.4547 39 1 4.3853 2.3678 6.2274 40 1 4.6031 4.6654 5.9041 41 1 5.3435 4.6315 7.5287 42 1 4.5526 7.5214 6.8977 43 1 8.0332 3.6202 4.6545 44 1 8.1549 3.2004 6.3906 45 1 4.1119 -2.1440 -0.0104 46 1 1.6522 -2.1331 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665601610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:50 Heat of formation + Delta-G solvation = 25.148491 kcal Electronic energy + Delta-G solvation = -25422.135348 eV Core-core repulsion = 21891.336289 eV Total energy + Delta-G solvation = -3530.799059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.94600 -39.28667 -37.27624 -35.49058 -33.68561 -32.20348 -31.71491 -31.06293 -29.36892 -28.63535 -27.10932 -26.13613 -24.42479 -22.88545 -21.93241 -20.80786 -20.07676 -19.73197 -19.19823 -17.24301 -16.66829 -16.23466 -15.76463 -15.47446 -15.30354 -15.15514 -14.64074 -14.19791 -14.00382 -13.81838 -13.70410 -13.54826 -13.13682 -13.11109 -12.56905 -12.42376 -12.26943 -11.99776 -11.86996 -11.81567 -11.73213 -11.15490 -10.97382 -10.92721 -10.90166 -10.69038 -10.34860 -10.11505 -9.95269 -9.83596 -9.68851 -9.46732 -9.05017 -8.72480 -8.50008 -8.22300 -6.82830 -5.73326 -3.05777 0.87924 1.24214 2.23095 2.96383 3.38126 3.44604 3.46552 3.57483 3.70585 4.48987 4.58127 4.64078 4.74827 4.80926 4.85949 5.04962 5.12393 5.26184 5.32577 5.34779 5.35591 5.46689 5.47928 5.51374 5.52316 5.57207 5.72836 5.77815 5.85007 5.87758 5.95074 6.15092 6.22257 6.29386 6.38638 6.42314 6.48684 6.51275 6.55954 6.66655 6.69512 6.84879 7.07761 7.52965 7.55723 7.78677 7.93121 8.23581 8.58650 9.20946 9.80934 10.46997 11.38615 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.002937 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.463661 B = 9532.846328 C =10144.228272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.091 4.091 3 C -0.120 4.120 4 C -0.112 4.112 5 C -0.057 4.057 6 C -0.137 4.137 7 C -0.101 4.101 8 C -0.131 4.131 9 C 0.516 3.484 10 O -0.551 6.551 11 N -0.704 5.704 12 C 0.127 3.873 13 H 0.089 0.911 14 C -0.154 4.154 15 C 0.176 3.824 16 N -0.604 5.604 17 C -0.223 4.223 18 H 0.077 0.923 19 C -0.010 4.010 20 N -0.923 5.923 21 Si 0.911 3.089 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 C 0.126 3.874 26 C -0.108 4.108 27 C -0.121 4.121 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.124 0.876 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.124 0.876 35 H 0.108 0.892 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.071 0.929 39 H 0.064 0.936 40 H 0.046 0.954 41 H 0.044 0.956 42 H 0.251 0.749 43 H 0.041 0.959 44 H 0.027 0.973 45 H 0.122 0.878 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.750 -14.882 -13.689 21.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.091 4.091 3 C -0.138 4.138 4 C -0.129 4.129 5 C -0.057 4.057 6 C -0.155 4.155 7 C -0.119 4.119 8 C -0.170 4.170 9 C 0.302 3.698 10 O -0.429 6.429 11 N -0.354 5.354 12 C 0.022 3.978 13 H 0.107 0.893 14 C -0.193 4.193 15 C 0.051 3.949 16 N -0.331 5.331 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.571 5.571 21 Si 0.742 3.258 22 H -0.206 1.206 23 H -0.218 1.218 24 H -0.218 1.218 25 C -0.002 4.002 26 C -0.126 4.126 27 C -0.139 4.139 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.142 0.858 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.237 0.763 38 H 0.089 0.911 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.045 0.955 45 H 0.140 0.860 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.146 -15.173 -13.493 21.526 hybrid contribution -0.057 1.323 -0.086 1.327 sum -7.204 -13.850 -13.579 20.691 Atomic orbital electron populations 1.20804 0.91306 1.02869 1.02201 1.19983 0.96079 0.93218 0.99773 1.21014 0.94095 0.97660 1.01012 1.21465 0.94145 0.97683 0.99652 1.19099 0.93336 0.93127 1.00125 1.21590 0.91635 0.99798 1.02460 1.22895 1.00041 0.94859 0.94148 1.21225 1.01526 1.01853 0.92407 1.20434 0.83624 0.79605 0.86088 1.90658 1.27704 1.40342 1.84225 1.45837 1.34596 1.45362 1.09623 1.22209 0.95070 0.99184 0.81382 0.89283 1.23220 0.97989 1.00677 0.97402 1.21163 0.88663 0.86348 0.98682 1.44482 1.15476 1.00481 1.72644 1.19104 1.00608 0.80851 1.34615 0.90520 1.24777 0.96635 0.97880 1.01252 1.69961 1.09641 1.29690 1.47826 0.86054 0.77695 0.84781 0.77318 1.20564 1.21812 1.21798 1.22021 0.93181 0.87262 0.97700 1.21245 0.94001 0.97482 0.99848 1.20957 0.94121 0.97481 1.01346 0.91281 0.91622 0.91422 0.85841 0.85341 0.85897 0.85821 0.87401 0.87774 0.76296 0.91060 0.91683 0.93611 0.93808 0.93879 0.94026 0.95529 0.85967 0.86181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.80 10.00 36.00 0.36 -0.44 16 2 C -0.09 -0.84 5.88 -104.54 -0.62 -1.45 16 3 C -0.12 -1.16 9.68 -39.64 -0.38 -1.54 16 4 C -0.11 -1.14 7.32 -39.19 -0.29 -1.43 16 5 C -0.06 -0.61 5.13 -105.01 -0.54 -1.15 16 6 C -0.14 -1.46 9.79 -37.57 -0.37 -1.83 16 7 C -0.10 -1.20 8.71 -36.22 -0.32 -1.51 16 8 C -0.13 -1.61 4.47 -29.03 -0.13 -1.74 16 9 C 0.52 8.36 7.82 -10.98 -0.09 8.27 16 10 O -0.55 -10.67 15.67 5.56 0.09 -10.59 16 11 N -0.70 -11.63 5.19 -51.48 -0.27 -11.90 16 12 C 0.13 2.31 3.46 -65.52 -0.23 2.08 16 13 H 0.09 1.59 7.54 -51.93 -0.39 1.20 16 14 C -0.15 -2.76 6.53 -24.90 -0.16 -2.92 16 15 C 0.18 4.10 5.36 -3.07 -0.02 4.08 16 16 N -0.60 -15.14 3.40 -169.77 -0.58 -15.72 16 17 C -0.22 -6.18 10.28 -15.06 -0.15 -6.33 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -26.50 10.31 55.49 0.57 -25.93 16 21 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 C 0.13 2.70 6.95 -2.27 -0.02 2.68 16 26 C -0.11 -1.07 9.79 -39.20 -0.38 -1.46 16 27 C -0.12 -1.12 9.68 -39.64 -0.38 -1.51 16 28 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.40 8.08 -51.93 -0.42 -0.02 16 30 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 31 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 32 H 0.13 1.19 6.40 -52.49 -0.34 0.86 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.12 1.49 8.05 -52.49 -0.42 1.07 16 35 H 0.11 1.24 4.84 -51.93 -0.25 0.99 16 36 H 0.10 1.13 8.00 -51.93 -0.42 0.72 16 37 H 0.40 6.27 8.67 -40.82 -0.35 5.92 16 38 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.05 1.15 7.38 -51.93 -0.38 0.77 16 41 H 0.04 1.14 7.51 -51.93 -0.39 0.75 16 42 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 375.41 15.07 5.66 5.66 Total: -1.00 -32.14 375.41 -10.49 -42.62 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -7.13 Total: 5.46 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -3.80 Total: -6.56 kcal Atomic # 7 Polarization: -53.27 SS G_CDS: -0.27 Total: -53.54 kcal Atomic # 8 Polarization: -10.67 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.14 -10.49 -42.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665601610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.771 kcal (2) G-P(sol) polarization free energy of solvation -32.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds