Wall clock time and date at job start Tue Mar 31 2020 11:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38347 * 119.85369 * 2 1 4 4 C 1.37979 * 120.13866 * 180.02562 * 3 2 1 5 5 C 1.39541 * 119.85262 * 359.97438 * 4 3 2 6 6 C 1.47819 * 120.13398 * 180.02562 * 5 4 3 7 7 C 1.32565 * 119.99850 * 38.89702 * 6 5 4 8 8 C 1.50697 * 120.00223 * 7.58026 * 7 6 5 9 9 C 1.50707 * 109.46842 * 127.47026 * 8 7 6 10 10 O 1.21274 * 119.99753 * 359.97438 * 9 8 7 11 11 N 1.34779 * 119.99833 * 179.97438 * 9 8 7 12 12 C 1.46492 * 119.99823 * 179.97438 * 11 9 8 13 13 H 1.09000 * 110.92285 * 328.90956 * 12 11 9 14 14 C 1.55158 * 111.00458 * 205.00110 * 12 11 9 15 15 C 1.54317 * 103.10388 * 277.52082 * 14 12 11 16 16 N 1.47020 * 107.27267 * 337.71524 * 15 14 12 17 17 C 1.36937 * 125.65354 * 178.90215 * 16 15 14 18 18 H 1.08001 * 120.00613 * 180.02562 * 17 16 15 19 19 C 1.38817 * 119.99501 * 0.03405 * 17 16 15 20 20 N 1.31613 * 120.00075 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 119.99944 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47062 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47199 * 119.99456 * 21 19 17 24 24 H 1.48495 * 109.47114 * 239.99835 * 21 19 17 25 25 C 1.47426 * 108.70264 * 358.94157 * 16 15 14 26 26 C 1.39527 * 119.71891 * 0.27758 * 5 4 3 27 27 C 1.37976 * 119.85894 * 359.44683 * 26 5 4 28 28 H 1.08997 * 109.47282 * 89.99544 * 1 2 3 29 29 H 1.09000 * 109.47021 * 210.00119 * 1 2 3 30 30 H 1.09003 * 109.47174 * 329.99480 * 1 2 3 31 31 H 1.08000 * 119.93367 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.07057 * 180.02562 * 4 3 2 33 33 H 1.07995 * 119.99706 * 218.88789 * 6 5 4 34 34 H 1.07999 * 119.99396 * 187.59039 * 7 6 5 35 35 H 1.09000 * 109.47532 * 7.47092 * 8 7 6 36 36 H 1.09000 * 109.47086 * 247.46475 * 8 7 6 37 37 H 0.96999 * 119.99604 * 0.02562 * 11 9 8 38 38 H 1.09005 * 110.72021 * 159.06604 * 14 12 11 39 39 H 1.09000 * 110.71654 * 35.97664 * 14 12 11 40 40 H 1.08996 * 109.88209 * 97.13684 * 15 14 12 41 41 H 1.09000 * 109.88248 * 218.30154 * 15 14 12 42 42 H 0.97000 * 119.99926 * 180.02562 * 20 19 17 43 43 H 1.09006 * 110.36679 * 142.95910 * 25 16 15 44 44 H 1.08994 * 110.36976 * 265.28405 * 25 16 15 45 45 H 1.08007 * 120.07014 * 179.72052 * 26 5 4 46 46 H 1.07997 * 119.93110 * 180.27583 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2067 -0.0005 5 6 4.2760 0.0000 -0.0005 6 6 5.7542 0.0001 -0.0005 7 6 6.4170 0.8936 0.7204 8 6 5.6733 1.7967 1.6703 9 6 6.2996 1.7116 3.0384 10 8 7.2554 0.9885 3.2238 11 7 5.7976 2.4392 4.0558 12 6 6.4061 2.3561 5.3858 13 1 6.8283 1.3663 5.5595 14 6 5.3809 2.7251 6.4904 15 6 5.4215 4.2677 6.5041 16 7 6.7101 4.6756 5.9256 17 6 7.1283 5.9661 5.7385 18 1 8.0969 6.1622 5.3030 19 6 6.3071 7.0223 6.1089 20 7 5.1265 6.7834 6.6393 21 14 6.8777 8.7827 5.8545 22 1 8.2325 8.7809 5.2462 23 1 5.9304 9.4846 4.9518 24 1 6.9244 9.4820 7.1636 25 6 7.4771 3.4652 5.5791 26 6 3.5754 -1.2066 -0.0059 27 6 2.1957 -1.1998 0.0005 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3634 0.8900 0.5139 31 1 1.6522 2.1332 0.0004 32 1 4.1119 2.1440 -0.0001 33 1 6.2942 -0.7279 -0.5877 34 1 7.4898 0.9744 0.6267 35 1 4.6307 1.4840 1.7279 36 1 5.7251 2.8243 1.3103 37 1 5.0330 3.0173 3.9075 38 1 5.6913 2.3225 7.4547 39 1 4.3853 2.3678 6.2274 40 1 4.6031 4.6654 5.9041 41 1 5.3435 4.6315 7.5287 42 1 4.5526 7.5214 6.8977 43 1 8.0332 3.6202 4.6545 44 1 8.1549 3.2004 6.3906 45 1 4.1119 -2.1440 -0.0104 46 1 1.6522 -2.1331 0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665601610.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:52:49 Heat of formation + Delta-G solvation = 7.562787 kcal Electronic energy + Delta-G solvation = -25422.897921 eV Core-core repulsion = 21891.336289 eV Total energy + Delta-G solvation = -3531.561632 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.06280 -40.27780 -38.88103 -36.37179 -35.37525 -33.65816 -32.82033 -31.77353 -31.08805 -29.81391 -28.61651 -26.99217 -26.32308 -23.66721 -22.83481 -22.09569 -21.79453 -21.19764 -20.05971 -18.96331 -18.12680 -17.45485 -16.81430 -16.68414 -16.44255 -16.14569 -16.00890 -15.67259 -15.32804 -15.11249 -14.65135 -14.54258 -14.27869 -14.00681 -13.90474 -13.82927 -13.56756 -13.18545 -12.94864 -12.89959 -12.85060 -12.78935 -12.55656 -12.26575 -12.09125 -11.99090 -11.83791 -11.81699 -11.69737 -11.59804 -10.94189 -10.72667 -10.50201 -10.03658 -9.77956 -9.00187 -8.86132 -7.85004 -5.19213 0.11312 0.51996 1.39082 1.46001 1.46911 1.56874 1.68093 2.37172 2.49261 2.91314 3.34059 3.67420 3.74102 3.78126 3.90707 4.00311 4.04947 4.07856 4.10294 4.19408 4.31258 4.40266 4.48815 4.55737 4.59725 4.67786 4.75377 4.84648 4.86168 4.88206 4.90216 4.99674 5.01613 5.03571 5.21631 5.28220 5.41132 5.44786 5.51221 5.59807 5.68150 5.69777 5.73654 5.77028 5.85375 6.14233 6.19927 6.62557 7.11933 7.28981 7.77182 8.41699 9.25081 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.002937 C = 0.002760 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.463661 B = 9532.846328 C =10144.228272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.096 4.096 3 C -0.132 4.132 4 C -0.120 4.120 5 C -0.078 4.078 6 C -0.120 4.120 7 C -0.124 4.124 8 C -0.118 4.118 9 C 0.514 3.486 10 O -0.584 6.584 11 N -0.704 5.704 12 C 0.140 3.860 13 H 0.100 0.900 14 C -0.134 4.134 15 C 0.185 3.815 16 N -0.620 5.620 17 C -0.240 4.240 18 H 0.073 0.927 19 C -0.060 4.060 20 N -0.946 5.946 21 Si 0.975 3.025 22 H -0.272 1.272 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.123 3.877 26 C -0.116 4.116 27 C -0.129 4.129 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.117 0.883 35 H 0.119 0.881 36 H 0.117 0.883 37 H 0.408 0.592 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.022 0.978 41 H 0.008 0.992 42 H 0.247 0.753 43 H 0.028 0.972 44 H 0.030 0.970 45 H 0.134 0.866 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 -15.832 -14.664 23.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.096 4.096 3 C -0.150 4.150 4 C -0.138 4.138 5 C -0.078 4.078 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.157 4.157 9 C 0.302 3.698 10 O -0.464 6.464 11 N -0.353 5.353 12 C 0.034 3.966 13 H 0.117 0.883 14 C -0.173 4.173 15 C 0.060 3.940 16 N -0.347 5.347 17 C -0.369 4.369 18 H 0.091 0.909 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.803 3.197 22 H -0.196 1.196 23 H -0.216 1.216 24 H -0.220 1.220 25 C -0.004 4.004 26 C -0.134 4.134 27 C -0.146 4.146 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.155 0.845 34 H 0.135 0.865 35 H 0.137 0.863 36 H 0.135 0.865 37 H 0.243 0.757 38 H 0.106 0.894 39 H 0.110 0.890 40 H 0.040 0.960 41 H 0.027 0.973 42 H 0.057 0.943 43 H 0.047 0.953 44 H 0.047 0.953 45 H 0.152 0.848 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -8.128 -16.140 -14.485 23.160 hybrid contribution 0.231 1.570 0.184 1.597 sum -7.897 -14.570 -14.301 21.890 Atomic orbital electron populations 1.20849 0.89717 1.03517 1.03031 1.20333 0.97413 0.93108 0.98773 1.21261 0.94089 0.98548 1.01060 1.21607 0.94615 0.97817 0.99763 1.19229 0.93329 0.93757 1.01458 1.21771 0.91895 0.98871 1.01288 1.22824 0.99814 0.96173 0.95458 1.21189 1.01619 1.02908 0.89987 1.21111 0.83005 0.78509 0.87129 1.90638 1.29218 1.41689 1.84869 1.45854 1.34649 1.45575 1.09267 1.22007 0.94047 0.98162 0.82416 0.88256 1.23071 0.99551 0.96351 0.98323 1.20945 0.87280 0.89901 0.95863 1.44703 1.16497 1.00750 1.72733 1.19381 1.00641 0.82434 1.34455 0.90874 1.25531 0.96895 1.01465 1.01404 1.70152 1.10431 1.30343 1.48537 0.85068 0.77571 0.80124 0.76896 1.19635 1.21576 1.22020 1.22134 0.93969 0.87281 0.96996 1.21482 0.94586 0.97755 0.99567 1.21246 0.94069 0.98420 1.00912 0.90278 0.90729 0.91060 0.84634 0.84859 0.84458 0.86514 0.86303 0.86481 0.75681 0.89384 0.88988 0.95983 0.97349 0.94340 0.95329 0.95264 0.84790 0.84285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 10.00 71.24 0.71 -0.61 16 2 C -0.10 -1.60 5.88 -19.81 -0.12 -1.71 16 3 C -0.13 -2.33 9.68 22.23 0.22 -2.11 16 4 C -0.12 -2.30 7.32 22.52 0.16 -2.13 16 5 C -0.08 -1.56 5.13 -20.12 -0.10 -1.66 16 6 C -0.12 -2.42 9.79 23.66 0.23 -2.19 16 7 C -0.12 -2.85 8.71 24.53 0.21 -2.64 16 8 C -0.12 -2.78 4.47 29.10 0.13 -2.65 16 9 C 0.51 16.20 7.82 87.66 0.69 16.89 16 10 O -0.58 -22.31 15.67 -3.01 -0.05 -22.36 16 11 N -0.70 -22.47 5.19 -435.17 -2.26 -24.73 16 12 C 0.14 4.91 3.46 46.56 0.16 5.07 16 13 H 0.10 3.37 7.54 -2.39 -0.02 3.35 16 14 C -0.13 -4.60 6.53 31.78 0.21 -4.39 16 15 C 0.18 8.67 5.36 86.73 0.47 9.13 16 16 N -0.62 -31.41 3.40 -691.03 -2.35 -33.76 16 17 C -0.24 -13.44 10.28 84.03 0.86 -12.57 16 18 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 19 C -0.06 -3.34 5.49 84.86 0.47 -2.87 16 20 N -0.95 -55.17 10.31 21.65 0.22 -54.94 16 21 Si 0.97 45.45 29.55 68.60 2.03 47.47 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 23 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 24 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 25 C 0.12 5.26 6.95 87.03 0.60 5.86 16 26 C -0.12 -2.11 9.79 22.52 0.22 -1.89 16 27 C -0.13 -2.12 9.68 22.23 0.22 -1.90 16 28 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 30 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.13 2.31 6.40 -2.91 -0.02 2.29 16 33 H 0.14 2.28 8.06 -2.91 -0.02 2.25 16 34 H 0.12 2.81 8.05 -2.91 -0.02 2.78 16 35 H 0.12 2.56 4.84 -2.39 -0.01 2.55 16 36 H 0.12 2.42 8.00 -2.39 -0.02 2.40 16 37 H 0.41 12.25 8.67 -92.71 -0.80 11.45 16 38 H 0.09 2.76 8.14 -2.38 -0.02 2.74 16 39 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.02 1.12 7.38 -2.39 -0.02 1.11 16 41 H 0.01 0.44 7.51 -2.39 -0.02 0.43 16 42 H 0.25 14.03 8.31 -92.71 -0.77 13.25 16 43 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 44 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 45 H 0.13 2.01 8.06 -2.91 -0.02 1.99 16 46 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -69.27 375.41 3.10 -66.16 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 0.17 Total: 24.53 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 5.34 Total: -2.39 kcal Atomic # 7 Polarization: -109.04 SS G_CDS: -4.38 Total: -113.43 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.05 Total: -22.36 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -69.27 3.10 -66.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665601610.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.726 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds