Wall clock time and date at job start Tue Mar 31 2020 10:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99648 * 2 1 4 4 H 1.48508 * 109.47333 * 245.29422 * 3 2 1 5 5 H 1.48504 * 109.47487 * 5.29043 * 3 2 1 6 6 H 1.48496 * 109.47478 * 125.29053 * 3 2 1 7 7 C 1.38804 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00186 * 345.60773 * 7 2 1 9 9 N 1.36945 * 119.99858 * 165.61387 * 7 2 1 10 10 C 1.47024 * 125.64529 * 348.96917 * 9 7 2 11 11 C 1.54321 * 107.26902 * 181.02795 * 10 9 7 12 12 C 1.55155 * 102.94327 * 22.18783 * 11 10 9 13 13 O 1.42906 * 111.00183 * 82.61352 * 12 11 10 14 14 C 1.53001 * 111.00584 * 206.42364 * 12 11 10 15 15 N 1.46502 * 109.47258 * 180.02562 * 14 12 11 16 16 C 1.34779 * 120.00184 * 180.02562 * 15 14 12 17 17 O 1.21273 * 119.99705 * 359.97438 * 16 15 14 18 18 C 1.50693 * 119.99961 * 179.97438 * 16 15 14 19 19 C 1.52998 * 109.47533 * 300.00077 * 18 16 15 20 20 C 1.53001 * 109.47192 * 179.97438 * 19 18 16 21 21 C 1.52994 * 109.47235 * 60.00079 * 20 19 18 22 22 F 1.39909 * 109.46985 * 59.99707 * 21 20 19 23 23 C 1.53006 * 109.47148 * 300.00079 * 21 20 19 24 24 C 1.53001 * 109.47117 * 59.99848 * 23 21 20 25 25 C 1.47423 * 125.64835 * 168.66524 * 9 7 2 26 26 H 0.97003 * 120.00039 * 174.92649 * 1 2 3 27 27 H 1.09007 * 109.87907 * 300.43980 * 10 9 7 28 28 H 1.08997 * 109.88679 * 61.60513 * 10 9 7 29 29 H 1.08998 * 110.72053 * 140.55626 * 11 10 9 30 30 H 1.09001 * 110.72097 * 263.82956 * 11 10 9 31 31 H 0.96703 * 113.99983 * 179.97438 * 13 12 11 32 32 H 1.09003 * 109.47466 * 300.00414 * 14 12 11 33 33 H 1.08998 * 109.46954 * 60.00723 * 14 12 11 34 34 H 0.97003 * 119.99594 * 359.97438 * 15 14 12 35 35 H 1.09004 * 109.47086 * 60.00345 * 18 16 15 36 36 H 1.08998 * 109.47325 * 299.99823 * 19 18 16 37 37 H 1.09003 * 109.47038 * 59.99864 * 19 18 16 38 38 H 1.08998 * 109.47013 * 299.99634 * 20 19 18 39 39 H 1.09003 * 109.46979 * 180.02562 * 20 19 18 40 40 H 1.08999 * 109.47594 * 179.97438 * 21 20 19 41 41 H 1.08996 * 109.46446 * 299.99503 * 23 21 20 42 42 H 1.09003 * 109.47219 * 179.97438 * 23 21 20 43 43 H 1.08994 * 109.47084 * 180.02562 * 24 23 21 44 44 H 1.08998 * 109.46952 * 59.99989 * 24 23 21 45 45 H 1.09002 * 110.36342 * 274.74512 * 25 9 7 46 46 H 1.08997 * 110.36760 * 37.06374 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.0044 1.7540 -1.2720 5 1 1.2902 2.7435 0.1291 6 1 3.1981 1.6422 1.1427 7 6 2.0102 -1.2021 0.0005 8 1 1.4957 -2.1226 0.2334 9 7 3.3475 -1.2208 -0.2941 10 6 4.1190 -0.0975 -0.8461 11 6 5.5699 -0.5878 -1.0360 12 6 5.4089 -2.1291 -1.1111 13 8 5.0410 -2.5421 -2.4288 14 6 6.6861 -2.8369 -0.6543 15 7 6.4977 -4.2873 -0.7390 16 6 7.4974 -5.1186 -0.3840 17 8 8.5531 -4.6659 0.0051 18 6 7.3034 -6.6104 -0.4707 19 6 6.1391 -7.0266 0.4305 20 6 5.9418 -8.5412 0.3420 21 6 7.2187 -9.2495 0.7989 22 9 7.5021 -8.8925 2.1216 23 6 8.3830 -8.8333 -0.1023 24 6 8.5804 -7.3187 -0.0138 25 6 4.2531 -2.3685 -0.1045 26 1 -0.4850 -0.8368 -0.0743 27 1 3.7005 0.2030 -1.8067 28 1 4.0993 0.7425 -0.1518 29 1 5.9903 -0.1983 -1.9632 30 1 6.1870 -0.3057 -0.1830 31 1 4.9293 -3.4978 -2.5247 32 1 7.5154 -2.5404 -1.2966 33 1 6.9070 -2.5585 0.3761 34 1 5.6532 -4.6493 -1.0499 35 1 7.0828 -6.8889 -1.5012 36 1 6.3597 -6.7482 1.4610 37 1 5.2293 -6.5224 0.1047 38 1 5.7209 -8.8192 -0.6885 39 1 5.1120 -8.8376 0.9837 40 1 7.0780 -10.3285 0.7363 41 1 8.1622 -9.1115 -1.1328 42 1 9.2929 -9.3375 0.2235 43 1 9.4095 -7.0222 -0.6561 44 1 8.8012 -7.0407 1.0167 45 1 4.6339 -2.3865 0.9167 46 1 3.7373 -3.3007 -0.3344 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754758123.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:55 Heat of formation + Delta-G solvation = -119.527954 kcal Electronic energy + Delta-G solvation = -27337.945889 eV Core-core repulsion = 23370.103964 eV Total energy + Delta-G solvation = -3967.841925 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -47.93685 -40.41905 -38.95911 -37.31532 -35.51109 -34.28497 -32.41146 -31.39602 -31.18444 -29.92667 -28.68090 -26.09010 -24.07473 -23.25133 -22.82296 -21.11719 -20.57318 -20.20859 -19.89252 -17.88936 -17.53542 -16.80659 -16.49272 -16.12985 -15.83661 -15.69534 -15.35505 -15.03712 -14.68119 -14.23514 -13.98865 -13.81357 -13.60617 -13.48490 -13.18506 -13.01483 -12.90141 -12.63096 -12.40152 -12.18673 -12.15289 -11.89141 -11.50781 -11.42190 -11.29646 -11.10482 -11.06713 -10.81770 -10.75588 -10.47161 -10.07913 -9.86394 -9.82393 -9.33115 -9.21889 -8.98893 -8.71152 -7.04911 -6.32827 -3.24612 2.47950 2.95709 3.43116 3.49187 3.71341 4.05891 4.09856 4.23255 4.24179 4.38184 4.54037 4.56231 4.62215 4.65332 4.78394 4.85539 4.87938 4.97774 5.00737 5.09475 5.17461 5.28963 5.40523 5.43453 5.51002 5.54768 5.57853 5.65338 5.70681 5.77748 5.81682 5.84855 5.98571 6.03529 6.08759 6.18827 6.25657 6.30975 6.51464 6.76464 7.27607 7.60494 7.75063 8.05506 8.30745 9.01343 9.52910 10.19232 11.17915 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022409 B = 0.003034 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.208349 B = 9225.045961 C = 9945.421934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.021 4.021 3 Si 1.071 2.929 4 H -0.285 1.285 5 H -0.302 1.302 6 H -0.298 1.298 7 C -0.322 4.322 8 H 0.077 0.923 9 N -0.606 5.606 10 C 0.114 3.886 11 C -0.113 4.113 12 C 0.102 3.898 13 O -0.536 6.536 14 C 0.104 3.896 15 N -0.727 5.727 16 C 0.519 3.481 17 O -0.538 6.538 18 C -0.107 4.107 19 C -0.115 4.115 20 C -0.144 4.144 21 C 0.089 3.911 22 F -0.211 7.211 23 C -0.146 4.146 24 C -0.101 4.101 25 C 0.118 3.882 26 H 0.261 0.739 27 H 0.051 0.949 28 H 0.030 0.970 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.365 0.635 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.398 0.602 35 H 0.099 0.901 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.032 0.968 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.591 -18.484 -3.007 25.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.220 4.220 3 Si 0.905 3.095 4 H -0.213 1.213 5 H -0.230 1.230 6 H -0.227 1.227 7 C -0.449 4.449 8 H 0.095 0.905 9 N -0.333 5.333 10 C -0.010 4.010 11 C -0.151 4.151 12 C 0.059 3.941 13 O -0.340 6.340 14 C -0.021 4.021 15 N -0.380 5.380 16 C 0.305 3.695 17 O -0.415 6.415 18 C -0.128 4.128 19 C -0.152 4.152 20 C -0.182 4.182 21 C 0.053 3.947 22 F -0.192 7.192 23 C -0.183 4.183 24 C -0.139 4.139 25 C -0.008 4.008 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.100 0.900 30 H 0.101 0.899 31 H 0.211 0.789 32 H 0.094 0.906 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.117 0.883 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.050 0.950 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 17.079 -15.838 -2.716 23.450 hybrid contribution -0.295 -2.472 0.017 2.490 sum 16.784 -18.310 -2.699 24.984 Atomic orbital electron populations 1.70901 1.05706 1.29219 1.51083 1.25859 0.96466 1.00970 0.98701 0.83832 0.73179 0.76175 0.76335 1.21255 1.22986 1.22650 1.20140 0.81640 0.96048 1.47082 0.90547 1.44679 1.05704 1.08443 1.74522 1.21972 0.89853 0.91745 0.97450 1.22579 0.98429 0.91661 1.02439 1.22742 0.92082 0.95534 0.83701 1.86636 1.91808 1.26944 1.28625 1.21990 0.98295 0.79150 1.02642 1.45988 1.16991 1.06939 1.68068 1.20573 0.83495 0.88733 0.76665 1.90703 1.26608 1.78301 1.45862 1.21379 0.98010 0.91527 1.01903 1.21523 0.97182 0.95684 1.00855 1.22128 0.97303 0.95631 1.03116 1.21591 0.95749 0.99533 0.77836 1.92819 1.94884 1.93806 1.37728 1.22165 0.98544 0.97225 1.00403 1.21311 0.96088 0.92959 1.03507 1.22186 0.90508 0.92668 0.95487 0.92894 0.93156 0.95273 0.90015 0.89888 0.78852 0.90625 0.90226 0.76747 0.88332 0.90478 0.90661 0.89784 0.90203 0.89941 0.90017 0.90419 0.90665 0.90441 0.95027 0.93794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.32 13.70 55.49 0.76 -28.56 16 2 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 3 Si 1.07 27.08 24.53 -169.99 -4.17 22.91 16 4 H -0.29 -6.63 5.43 56.52 0.31 -6.32 16 5 H -0.30 -7.79 7.11 56.52 0.40 -7.38 16 6 H -0.30 -7.24 6.84 56.52 0.39 -6.85 16 7 C -0.32 -9.23 10.56 -15.06 -0.16 -9.38 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 N -0.61 -14.73 3.32 -169.94 -0.56 -15.30 16 10 C 0.11 2.51 4.61 -3.06 -0.01 2.50 16 11 C -0.11 -1.88 6.15 -24.90 -0.15 -2.04 16 12 C 0.10 1.57 0.97 -88.36 -0.09 1.48 16 13 O -0.54 -8.28 13.21 -35.23 -0.47 -8.74 16 14 C 0.10 1.34 4.88 -4.04 -0.02 1.32 16 15 N -0.73 -7.84 5.09 -60.30 -0.31 -8.14 16 16 C 0.52 6.06 7.15 -10.99 -0.08 5.98 16 17 O -0.54 -8.39 15.98 5.56 0.09 -8.30 16 18 C -0.11 -0.88 2.52 -91.78 -0.23 -1.11 16 19 C -0.11 -0.89 4.98 -26.73 -0.13 -1.03 16 20 C -0.14 -0.88 5.72 -26.73 -0.15 -1.03 16 21 C 0.09 0.60 4.12 -26.73 -0.11 0.49 16 22 F -0.21 -2.16 16.05 2.25 0.04 -2.12 16 23 C -0.15 -0.89 5.72 -26.73 -0.15 -1.05 16 24 C -0.10 -0.87 4.37 -26.73 -0.12 -0.99 16 25 C 0.12 2.23 6.23 -2.41 -0.02 2.22 16 26 H 0.26 8.13 8.73 -40.82 -0.36 7.77 16 27 H 0.05 1.19 6.79 -51.93 -0.35 0.84 16 28 H 0.03 0.68 3.82 -51.93 -0.20 0.48 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 1.21 8.04 -51.93 -0.42 0.80 16 31 H 0.37 4.11 7.69 45.56 0.35 4.46 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.40 3.45 6.70 -40.82 -0.27 3.17 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.08 0.76 7.80 -51.93 -0.41 0.36 16 37 H 0.07 0.53 7.56 -51.93 -0.39 0.14 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.08 0.85 7.76 -51.93 -0.40 0.44 16 45 H 0.03 0.60 7.99 -51.93 -0.41 0.19 16 46 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -35.87 355.14 -7.62 -43.49 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.84 Total: 2.75 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: -1.52 Total: -3.35 kcal Atomic # 7 Polarization: -51.89 SS G_CDS: -0.11 Total: -52.00 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: -0.38 Total: -17.04 kcal Atomic # 9 Polarization: -2.16 SS G_CDS: 0.04 Total: -2.12 kcal Atomic # 14 Polarization: 27.08 SS G_CDS: -4.17 Total: 22.91 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.87 -7.62 -43.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754758123.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.036 kcal (2) G-P(sol) polarization free energy of solvation -35.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds