Wall clock time and date at job start Tue Mar 31 2020 11:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36851 * 125.02212 * 2 1 4 4 H 0.97006 * 125.00985 * 0.06299 * 3 2 1 5 5 C 1.37400 * 109.98319 * 180.02562 * 3 2 1 6 6 C 1.39370 * 133.24718 * 180.02562 * 5 3 2 7 7 C 1.36320 * 120.23195 * 179.97438 * 6 5 3 8 8 C 1.40204 * 120.67053 * 0.25200 * 7 6 5 9 9 C 1.47663 * 119.97411 * 179.70355 * 8 7 6 10 10 O 1.21571 * 119.99771 * 137.26503 * 9 8 7 11 11 N 1.34773 * 119.99551 * 317.26932 * 9 8 7 12 12 C 1.46501 * 119.99792 * 213.05532 * 11 9 8 13 13 C 1.50696 * 109.47514 * 89.99825 * 12 11 9 14 14 H 1.08004 * 119.99779 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00525 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99622 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00226 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47319 * 89.99910 * 17 15 13 19 19 H 1.48505 * 109.46693 * 210.00227 * 17 15 13 20 20 H 1.48504 * 109.46943 * 329.99821 * 17 15 13 21 21 C 1.46505 * 120.00526 * 33.05553 * 11 9 8 22 22 C 1.53000 * 109.46737 * 301.14830 * 21 11 9 23 23 C 1.52999 * 109.46789 * 61.14486 * 21 11 9 24 24 C 1.39151 * 120.05215 * 359.45947 * 8 7 6 25 25 C 1.39262 * 119.39245 * 0.54030 * 24 8 7 26 26 C 1.34197 * 125.01640 * 180.02562 * 2 1 3 27 27 C 1.50696 * 126.54466 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.46530 * 89.97918 * 1 2 3 29 29 H 1.08995 * 109.47143 * 209.97811 * 1 2 3 30 30 H 1.09000 * 109.47113 * 329.98369 * 1 2 3 31 31 H 1.07998 * 119.88483 * 359.94775 * 6 5 3 32 32 H 1.08006 * 119.66161 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47017 * 210.00247 * 12 11 9 34 34 H 1.09001 * 109.46688 * 329.99718 * 12 11 9 35 35 H 0.96999 * 120.00222 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.46980 * 181.14681 * 21 11 9 37 37 H 1.09000 * 109.47653 * 13.43427 * 22 21 11 38 38 H 1.08993 * 109.47287 * 133.44068 * 22 21 11 39 39 H 1.09008 * 109.46830 * 253.43480 * 22 21 11 40 40 H 1.08994 * 109.46977 * 104.33633 * 23 21 11 41 41 H 1.09007 * 109.47017 * 224.32956 * 23 21 11 42 42 H 1.08998 * 109.47524 * 344.33117 * 23 21 11 43 43 H 1.08001 * 120.30303 * 180.30408 * 24 8 7 44 44 H 1.09003 * 109.47099 * 89.97608 * 27 26 2 45 45 H 1.08997 * 109.47387 * 209.97681 * 27 26 2 46 46 H 1.08997 * 109.47413 * 329.97709 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2924 1.1207 0.0000 4 1 1.9612 2.0325 0.0009 5 6 3.6194 0.7642 -0.0006 6 6 4.8050 1.4968 -0.0004 7 6 6.0080 0.8557 -0.0006 8 6 6.0720 -0.5449 -0.0063 9 6 7.3835 -1.2234 -0.0131 10 8 7.5702 -2.1924 0.6970 11 7 8.3734 -0.7684 -0.8064 12 6 9.3337 -1.7076 -1.3912 13 6 8.8228 -2.1818 -2.7273 14 1 7.8775 -1.8193 -3.1035 15 6 9.5621 -3.0782 -3.4695 16 7 10.7134 -3.5191 -3.0116 17 14 8.9291 -3.6653 -5.1260 18 1 9.4199 -2.7573 -6.1936 19 1 9.4200 -5.0430 -5.3834 20 1 7.4441 -3.6624 -5.1177 21 6 8.4893 0.6654 -1.0841 22 6 7.2008 1.1632 -1.7419 23 6 8.7181 1.4217 0.2261 24 6 4.9007 -1.2960 -0.0005 25 6 3.6703 -0.6436 -0.0004 26 6 2.2771 -1.0991 -0.0005 27 6 1.8004 -2.5287 -0.0006 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.7705 2.5763 -0.0005 32 1 6.9211 1.4326 -0.0008 33 1 10.2938 -1.2093 -1.5253 34 1 9.4576 -2.5619 -0.7256 35 1 11.2334 -4.1501 -3.5335 36 1 9.3304 0.8387 -1.7553 37 1 6.4224 0.4079 -1.6340 38 1 6.8802 2.0868 -1.2602 39 1 7.3819 1.3496 -2.8006 40 1 9.7643 1.7194 0.2958 41 1 8.0856 2.3091 0.2487 42 1 8.4675 0.7754 1.0673 43 1 4.9453 -2.3751 0.0001 44 1 1.6847 -2.8730 -1.0283 45 1 2.5302 -3.1550 0.5125 46 1 0.8416 -2.5921 0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036164114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:51 Heat of formation + Delta-G solvation = 92.248960 kcal Electronic energy + Delta-G solvation = -26810.627779 eV Core-core repulsion = 23282.738415 eV Total energy + Delta-G solvation = -3527.889364 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.55066 -40.06880 -36.94513 -35.90198 -33.21809 -33.19055 -31.69223 -30.64343 -29.93676 -28.18341 -27.07963 -26.69914 -25.73383 -23.60323 -22.20401 -21.90815 -21.15058 -19.18233 -18.27448 -17.62752 -16.51106 -16.27236 -16.04477 -15.26016 -15.01424 -14.72096 -14.47298 -14.02952 -13.98323 -13.81617 -13.48108 -13.25586 -13.10784 -12.91782 -12.70714 -12.63204 -12.35513 -12.23831 -12.11365 -11.75578 -11.68192 -11.45252 -11.23711 -11.08389 -10.90685 -10.81574 -10.52699 -10.35931 -10.08289 -9.94966 -9.59852 -9.23059 -9.01549 -8.42500 -7.74967 -7.46939 -7.41653 -6.02434 -4.08489 1.29240 1.56257 2.67777 3.08078 3.30818 3.33164 3.37768 3.43164 3.92950 4.18101 4.45249 4.62021 4.82517 5.01014 5.03298 5.07279 5.12989 5.20263 5.25395 5.30552 5.32248 5.39402 5.54449 5.57149 5.66778 5.77873 5.81107 5.85670 5.86841 5.90406 5.96263 6.04126 6.13516 6.24270 6.30237 6.43588 6.50532 6.64002 6.75234 6.79598 6.90701 7.17187 7.25834 7.48790 7.55274 7.67785 7.96847 8.26039 8.49985 8.88339 9.06644 9.57317 11.04707 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.004249 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.266489 B = 6588.424805 C = 7607.543958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.054 3.946 3 N -0.592 5.592 4 H 0.411 0.589 5 C 0.123 3.877 6 C -0.181 4.181 7 C -0.064 4.064 8 C -0.171 4.171 9 C 0.577 3.423 10 O -0.534 6.534 11 N -0.611 5.611 12 C 0.249 3.751 13 C -0.532 4.532 14 H 0.059 0.941 15 C 0.062 3.938 16 N -0.893 5.893 17 Si 0.896 3.104 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.138 3.862 22 C -0.198 4.198 23 C -0.179 4.179 24 C -0.007 4.007 25 C -0.128 4.128 26 C -0.156 4.156 27 C -0.079 4.079 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.118 0.882 32 H 0.176 0.824 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.099 0.901 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.128 0.872 44 H 0.063 0.937 45 H 0.065 0.935 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 13.041 5.702 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.052 4.052 3 N -0.195 5.195 4 H 0.247 0.753 5 C 0.015 3.985 6 C -0.202 4.202 7 C -0.083 4.083 8 C -0.176 4.176 9 C 0.365 3.635 10 O -0.411 6.411 11 N -0.344 5.344 12 C 0.130 3.870 13 C -0.571 4.571 14 H 0.077 0.923 15 C -0.140 4.140 16 N -0.532 5.532 17 Si 0.724 3.276 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.033 3.967 22 C -0.255 4.255 23 C -0.236 4.236 24 C -0.026 4.026 25 C -0.133 4.133 26 C -0.163 4.163 27 C -0.137 4.137 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.083 0.917 31 H 0.136 0.864 32 H 0.193 0.807 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.146 0.854 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.074 12.461 6.028 21.981 hybrid contribution -0.409 0.203 -1.231 1.313 sum -17.483 12.664 4.797 22.114 Atomic orbital electron populations 1.20401 0.88064 1.03290 1.02798 1.19932 0.92995 0.85545 1.06727 1.41547 1.04121 1.07849 1.66000 0.75304 1.18293 0.84308 0.94032 1.01841 1.19461 0.89376 0.98719 1.12606 1.22349 0.99791 0.94367 0.91752 1.19986 0.94333 0.93827 1.09465 1.17946 0.83516 0.83107 0.78913 1.90695 1.82608 1.29569 1.38226 1.47975 1.30780 1.06575 1.49102 1.19308 0.86608 0.88112 0.92948 1.21556 1.06195 1.26040 1.03263 0.92277 1.24937 0.94872 0.95957 0.98248 1.69941 1.12911 1.32103 1.38249 0.86529 0.79218 0.78069 0.83827 1.20622 1.21092 1.19860 1.20978 0.98766 0.81376 0.95575 1.23717 0.99206 1.01701 1.00836 1.22722 1.02286 1.00127 0.98502 1.20530 0.89070 0.99733 0.93315 1.18864 0.92796 0.91897 1.09722 1.20044 0.90578 0.94699 1.10930 1.20140 1.00557 0.91219 1.01742 0.90801 0.89907 0.91743 0.86368 0.80746 0.95051 0.93776 0.92710 0.88647 0.88297 0.91403 0.92617 0.91586 0.91401 0.91596 0.85426 0.91791 0.91566 0.92106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.18 36.01 0.37 -0.25 16 2 C 0.05 0.60 7.08 -81.77 -0.58 0.02 16 3 N -0.59 -6.46 6.05 -6.91 -0.04 -6.50 16 4 H 0.41 3.09 8.96 -40.82 -0.37 2.72 16 5 C 0.12 1.73 7.27 -83.95 -0.61 1.12 16 6 C -0.18 -2.37 9.69 -39.85 -0.39 -2.75 16 7 C -0.06 -0.96 4.85 -39.53 -0.19 -1.15 16 8 C -0.17 -3.20 4.28 -104.97 -0.45 -3.65 16 9 C 0.58 12.95 5.82 -12.41 -0.07 12.88 16 10 O -0.53 -13.92 16.80 5.30 0.09 -13.83 16 11 N -0.61 -13.44 2.38 -168.65 -0.40 -13.84 16 12 C 0.25 6.60 5.32 -5.20 -0.03 6.58 16 13 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16 14 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 16 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 21 C 0.14 2.33 3.27 -67.93 -0.22 2.11 16 22 C -0.20 -2.98 7.71 37.16 0.29 -2.69 16 23 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16 24 C -0.01 -0.13 9.71 -38.86 -0.38 -0.51 16 25 C -0.13 -2.06 6.34 -105.16 -0.67 -2.72 16 26 C -0.16 -2.10 6.32 -102.69 -0.65 -2.74 16 27 C -0.08 -0.89 10.17 36.00 0.37 -0.52 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.51 7.04 -51.93 -0.37 0.14 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 32 H 0.18 2.33 1.03 -54.27 -0.06 2.27 16 33 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16 34 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16 35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 36 H 0.10 1.63 7.80 -51.93 -0.41 1.22 16 37 H 0.10 1.73 4.01 -61.52 -0.25 1.48 16 38 H 0.07 0.79 5.21 -51.93 -0.27 0.52 16 39 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.70 6.16 -51.92 -0.32 0.38 16 42 H 0.07 1.01 6.83 -51.93 -0.35 0.65 16 43 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.06 0.53 7.06 -51.93 -0.37 0.16 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -34.47 361.09 -8.99 -43.46 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -6.47 Total: 4.33 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: -3.32 Total: -10.07 kcal Atomic # 7 Polarization: -46.46 SS G_CDS: 0.29 Total: -46.17 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.47 -8.99 -43.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036164114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.712 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds