Wall clock time and date at job start Tue Mar 31 2020 11:30:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.36851 * 125.02212 * 2 1
4 4 H 0.97006 * 125.00985 * 0.06299 * 3 2 1
5 5 C 1.37400 * 109.98319 * 180.02562 * 3 2 1
6 6 C 1.39370 * 133.24718 * 180.02562 * 5 3 2
7 7 C 1.36320 * 120.23195 * 179.97438 * 6 5 3
8 8 C 1.40204 * 120.67053 * 0.25200 * 7 6 5
9 9 C 1.47663 * 119.97411 * 179.70355 * 8 7 6
10 10 O 1.21571 * 119.99771 * 137.26503 * 9 8 7
11 11 N 1.34773 * 119.99551 * 317.26932 * 9 8 7
12 12 C 1.46501 * 119.99792 * 213.05532 * 11 9 8
13 13 C 1.50696 * 109.47514 * 89.99825 * 12 11 9
14 14 H 1.08004 * 119.99779 * 0.02562 * 13 12 11
15 15 C 1.37877 * 120.00525 * 180.02562 * 13 12 11
16 16 N 1.31516 * 119.99622 * 359.97438 * 15 13 12
17 17 Si 1.86797 * 120.00226 * 180.02562 * 15 13 12
18 18 H 1.48501 * 109.47319 * 89.99910 * 17 15 13
19 19 H 1.48505 * 109.46693 * 210.00227 * 17 15 13
20 20 H 1.48504 * 109.46943 * 329.99821 * 17 15 13
21 21 C 1.46505 * 120.00526 * 33.05553 * 11 9 8
22 22 C 1.53000 * 109.46737 * 301.14830 * 21 11 9
23 23 C 1.52999 * 109.46789 * 61.14486 * 21 11 9
24 24 C 1.39151 * 120.05215 * 359.45947 * 8 7 6
25 25 C 1.39262 * 119.39245 * 0.54030 * 24 8 7
26 26 C 1.34197 * 125.01640 * 180.02562 * 2 1 3
27 27 C 1.50696 * 126.54466 * 359.97438 * 26 2 1
28 28 H 1.08997 * 109.46530 * 89.97918 * 1 2 3
29 29 H 1.08995 * 109.47143 * 209.97811 * 1 2 3
30 30 H 1.09000 * 109.47113 * 329.98369 * 1 2 3
31 31 H 1.07998 * 119.88483 * 359.94775 * 6 5 3
32 32 H 1.08006 * 119.66161 * 179.97438 * 7 6 5
33 33 H 1.08998 * 109.47017 * 210.00247 * 12 11 9
34 34 H 1.09001 * 109.46688 * 329.99718 * 12 11 9
35 35 H 0.96999 * 120.00222 * 179.97438 * 16 15 13
36 36 H 1.08992 * 109.46980 * 181.14681 * 21 11 9
37 37 H 1.09000 * 109.47653 * 13.43427 * 22 21 11
38 38 H 1.08993 * 109.47287 * 133.44068 * 22 21 11
39 39 H 1.09008 * 109.46830 * 253.43480 * 22 21 11
40 40 H 1.08994 * 109.46977 * 104.33633 * 23 21 11
41 41 H 1.09007 * 109.47017 * 224.32956 * 23 21 11
42 42 H 1.08998 * 109.47524 * 344.33117 * 23 21 11
43 43 H 1.08001 * 120.30303 * 180.30408 * 24 8 7
44 44 H 1.09003 * 109.47099 * 89.97608 * 27 26 2
45 45 H 1.08997 * 109.47387 * 209.97681 * 27 26 2
46 46 H 1.08997 * 109.47413 * 329.97709 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2924 1.1207 0.0000
4 1 1.9612 2.0325 0.0009
5 6 3.6194 0.7642 -0.0006
6 6 4.8050 1.4968 -0.0004
7 6 6.0080 0.8557 -0.0006
8 6 6.0720 -0.5449 -0.0063
9 6 7.3835 -1.2234 -0.0131
10 8 7.5702 -2.1924 0.6970
11 7 8.3734 -0.7684 -0.8064
12 6 9.3337 -1.7076 -1.3912
13 6 8.8228 -2.1818 -2.7273
14 1 7.8775 -1.8193 -3.1035
15 6 9.5621 -3.0782 -3.4695
16 7 10.7134 -3.5191 -3.0116
17 14 8.9291 -3.6653 -5.1260
18 1 9.4199 -2.7573 -6.1936
19 1 9.4200 -5.0430 -5.3834
20 1 7.4441 -3.6624 -5.1177
21 6 8.4893 0.6654 -1.0841
22 6 7.2008 1.1632 -1.7419
23 6 8.7181 1.4217 0.2261
24 6 4.9007 -1.2960 -0.0005
25 6 3.6703 -0.6436 -0.0004
26 6 2.2771 -1.0991 -0.0005
27 6 1.8004 -2.5287 -0.0006
28 1 -0.3632 0.0004 -1.0277
29 1 -0.3633 -0.8901 0.5135
30 1 -0.3633 0.8898 0.5141
31 1 4.7705 2.5763 -0.0005
32 1 6.9211 1.4326 -0.0008
33 1 10.2938 -1.2093 -1.5253
34 1 9.4576 -2.5619 -0.7256
35 1 11.2334 -4.1501 -3.5335
36 1 9.3304 0.8387 -1.7553
37 1 6.4224 0.4079 -1.6340
38 1 6.8802 2.0868 -1.2602
39 1 7.3819 1.3496 -2.8006
40 1 9.7643 1.7194 0.2958
41 1 8.0856 2.3091 0.2487
42 1 8.4675 0.7754 1.0673
43 1 4.9453 -2.3751 0.0001
44 1 1.6847 -2.8730 -1.0283
45 1 2.5302 -3.1550 0.5125
46 1 0.8416 -2.5921 0.5139
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000036164114.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:51
Heat of formation + Delta-G solvation = 92.248960 kcal
Electronic energy + Delta-G solvation = -26810.627779 eV
Core-core repulsion = 23282.738415 eV
Total energy + Delta-G solvation = -3527.889364 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.55066 -40.06880 -36.94513 -35.90198 -33.21809 -33.19055 -31.69223 -30.64343
-29.93676 -28.18341 -27.07963 -26.69914 -25.73383 -23.60323 -22.20401 -21.90815
-21.15058 -19.18233 -18.27448 -17.62752 -16.51106 -16.27236 -16.04477 -15.26016
-15.01424 -14.72096 -14.47298 -14.02952 -13.98323 -13.81617 -13.48108 -13.25586
-13.10784 -12.91782 -12.70714 -12.63204 -12.35513 -12.23831 -12.11365 -11.75578
-11.68192 -11.45252 -11.23711 -11.08389 -10.90685 -10.81574 -10.52699 -10.35931
-10.08289 -9.94966 -9.59852 -9.23059 -9.01549 -8.42500 -7.74967 -7.46939
-7.41653 -6.02434 -4.08489 1.29240 1.56257 2.67777 3.08078 3.30818
3.33164 3.37768 3.43164 3.92950 4.18101 4.45249 4.62021 4.82517
5.01014 5.03298 5.07279 5.12989 5.20263 5.25395 5.30552 5.32248
5.39402 5.54449 5.57149 5.66778 5.77873 5.81107 5.85670 5.86841
5.90406 5.96263 6.04126 6.13516 6.24270 6.30237 6.43588 6.50532
6.64002 6.75234 6.79598 6.90701 7.17187 7.25834 7.48790 7.55274
7.67785 7.96847 8.26039 8.49985 8.88339 9.06644 9.57317 11.04707
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013856 B = 0.004249 C = 0.003680
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2020.266489 B = 6588.424805 C = 7607.543958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.054 3.946
3 N -0.592 5.592
4 H 0.411 0.589
5 C 0.123 3.877
6 C -0.181 4.181
7 C -0.064 4.064
8 C -0.171 4.171
9 C 0.577 3.423
10 O -0.534 6.534
11 N -0.611 5.611
12 C 0.249 3.751
13 C -0.532 4.532
14 H 0.059 0.941
15 C 0.062 3.938
16 N -0.893 5.893
17 Si 0.896 3.104
18 H -0.280 1.280
19 H -0.285 1.285
20 H -0.274 1.274
21 C 0.138 3.862
22 C -0.198 4.198
23 C -0.179 4.179
24 C -0.007 4.007
25 C -0.128 4.128
26 C -0.156 4.156
27 C -0.079 4.079
28 H 0.073 0.927
29 H 0.082 0.918
30 H 0.064 0.936
31 H 0.118 0.882
32 H 0.176 0.824
33 H 0.031 0.969
34 H 0.044 0.956
35 H 0.263 0.737
36 H 0.095 0.905
37 H 0.099 0.901
38 H 0.067 0.933
39 H 0.055 0.945
40 H 0.065 0.935
41 H 0.068 0.932
42 H 0.065 0.935
43 H 0.128 0.872
44 H 0.063 0.937
45 H 0.065 0.935
46 H 0.060 0.940
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.282 13.041 5.702 22.388
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C -0.052 4.052
3 N -0.195 5.195
4 H 0.247 0.753
5 C 0.015 3.985
6 C -0.202 4.202
7 C -0.083 4.083
8 C -0.176 4.176
9 C 0.365 3.635
10 O -0.411 6.411
11 N -0.344 5.344
12 C 0.130 3.870
13 C -0.571 4.571
14 H 0.077 0.923
15 C -0.140 4.140
16 N -0.532 5.532
17 Si 0.724 3.276
18 H -0.206 1.206
19 H -0.211 1.211
20 H -0.199 1.199
21 C 0.033 3.967
22 C -0.255 4.255
23 C -0.236 4.236
24 C -0.026 4.026
25 C -0.133 4.133
26 C -0.163 4.163
27 C -0.137 4.137
28 H 0.092 0.908
29 H 0.101 0.899
30 H 0.083 0.917
31 H 0.136 0.864
32 H 0.193 0.807
33 H 0.049 0.951
34 H 0.062 0.938
35 H 0.073 0.927
36 H 0.114 0.886
37 H 0.117 0.883
38 H 0.086 0.914
39 H 0.074 0.926
40 H 0.084 0.916
41 H 0.086 0.914
42 H 0.084 0.916
43 H 0.146 0.854
44 H 0.082 0.918
45 H 0.084 0.916
46 H 0.079 0.921
Dipole moment (debyes) X Y Z Total
from point charges -17.074 12.461 6.028 21.981
hybrid contribution -0.409 0.203 -1.231 1.313
sum -17.483 12.664 4.797 22.114
Atomic orbital electron populations
1.20401 0.88064 1.03290 1.02798 1.19932 0.92995 0.85545 1.06727
1.41547 1.04121 1.07849 1.66000 0.75304 1.18293 0.84308 0.94032
1.01841 1.19461 0.89376 0.98719 1.12606 1.22349 0.99791 0.94367
0.91752 1.19986 0.94333 0.93827 1.09465 1.17946 0.83516 0.83107
0.78913 1.90695 1.82608 1.29569 1.38226 1.47975 1.30780 1.06575
1.49102 1.19308 0.86608 0.88112 0.92948 1.21556 1.06195 1.26040
1.03263 0.92277 1.24937 0.94872 0.95957 0.98248 1.69941 1.12911
1.32103 1.38249 0.86529 0.79218 0.78069 0.83827 1.20622 1.21092
1.19860 1.20978 0.98766 0.81376 0.95575 1.23717 0.99206 1.01701
1.00836 1.22722 1.02286 1.00127 0.98502 1.20530 0.89070 0.99733
0.93315 1.18864 0.92796 0.91897 1.09722 1.20044 0.90578 0.94699
1.10930 1.20140 1.00557 0.91219 1.01742 0.90801 0.89907 0.91743
0.86368 0.80746 0.95051 0.93776 0.92710 0.88647 0.88297 0.91403
0.92617 0.91586 0.91401 0.91596 0.85426 0.91791 0.91566 0.92106
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.61 10.18 36.01 0.37 -0.25 16
2 C 0.05 0.60 7.08 -81.77 -0.58 0.02 16
3 N -0.59 -6.46 6.05 -6.91 -0.04 -6.50 16
4 H 0.41 3.09 8.96 -40.82 -0.37 2.72 16
5 C 0.12 1.73 7.27 -83.95 -0.61 1.12 16
6 C -0.18 -2.37 9.69 -39.85 -0.39 -2.75 16
7 C -0.06 -0.96 4.85 -39.53 -0.19 -1.15 16
8 C -0.17 -3.20 4.28 -104.97 -0.45 -3.65 16
9 C 0.58 12.95 5.82 -12.41 -0.07 12.88 16
10 O -0.53 -13.92 16.80 5.30 0.09 -13.83 16
11 N -0.61 -13.44 2.38 -168.65 -0.40 -13.84 16
12 C 0.25 6.60 5.32 -5.20 -0.03 6.58 16
13 C -0.53 -15.04 9.39 -34.44 -0.32 -15.37 16
14 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16
15 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16
16 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16
17 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16
18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16
19 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
20 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16
21 C 0.14 2.33 3.27 -67.93 -0.22 2.11 16
22 C -0.20 -2.98 7.71 37.16 0.29 -2.69 16
23 C -0.18 -2.41 8.37 37.16 0.31 -2.10 16
24 C -0.01 -0.13 9.71 -38.86 -0.38 -0.51 16
25 C -0.13 -2.06 6.34 -105.16 -0.67 -2.72 16
26 C -0.16 -2.10 6.32 -102.69 -0.65 -2.74 16
27 C -0.08 -0.89 10.17 36.00 0.37 -0.52 16
28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
29 H 0.08 0.51 7.04 -51.93 -0.37 0.14 16
30 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16
31 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16
32 H 0.18 2.33 1.03 -54.27 -0.06 2.27 16
33 H 0.03 0.84 7.93 -51.93 -0.41 0.43 16
34 H 0.04 1.32 7.37 -51.93 -0.38 0.94 16
35 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
36 H 0.10 1.63 7.80 -51.93 -0.41 1.22 16
37 H 0.10 1.73 4.01 -61.52 -0.25 1.48 16
38 H 0.07 0.79 5.21 -51.93 -0.27 0.52 16
39 H 0.05 0.83 8.14 -51.92 -0.42 0.41 16
40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16
41 H 0.07 0.70 6.16 -51.92 -0.32 0.38 16
42 H 0.07 1.01 6.83 -51.93 -0.35 0.65 16
43 H 0.13 2.39 8.06 -52.49 -0.42 1.97 16
44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16
45 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16
46 H 0.06 0.53 7.06 -51.93 -0.37 0.16 16
LS Contribution 361.09 15.07 5.44 5.44
Total: -1.00 -34.47 361.09 -8.99 -43.46
By element:
Atomic # 1 Polarization: 10.81 SS G_CDS: -6.47 Total: 4.33 kcal
Atomic # 6 Polarization: -6.75 SS G_CDS: -3.32 Total: -10.07 kcal
Atomic # 7 Polarization: -46.46 SS G_CDS: 0.29 Total: -46.17 kcal
Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal
Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal
Total LS contribution 5.44 Total: 5.44 kcal
Total: -34.47 -8.99 -43.46 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000036164114.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.712 kcal
(2) G-P(sol) polarization free energy of solvation -34.472 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.240 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.991 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.463 kcal
(6) G-S(sol) free energy of system = (1) + (5) 92.249 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds