Wall clock time and date at job start Tue Mar 31 2020 11:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36851 * 125.02212 * 2 1 4 4 H 0.97006 * 125.00985 * 0.06299 * 3 2 1 5 5 C 1.37400 * 109.98319 * 180.02562 * 3 2 1 6 6 C 1.39370 * 133.24718 * 180.02562 * 5 3 2 7 7 C 1.36320 * 120.23195 * 179.97438 * 6 5 3 8 8 C 1.40204 * 120.67053 * 0.25200 * 7 6 5 9 9 C 1.47663 * 119.97411 * 179.70355 * 8 7 6 10 10 O 1.21571 * 119.99771 * 137.26503 * 9 8 7 11 11 N 1.34773 * 119.99551 * 317.26932 * 9 8 7 12 12 C 1.46501 * 119.99792 * 213.05532 * 11 9 8 13 13 C 1.50696 * 109.47514 * 89.99825 * 12 11 9 14 14 H 1.08004 * 119.99779 * 0.02562 * 13 12 11 15 15 C 1.37877 * 120.00525 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99622 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00226 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47319 * 89.99910 * 17 15 13 19 19 H 1.48505 * 109.46693 * 210.00227 * 17 15 13 20 20 H 1.48504 * 109.46943 * 329.99821 * 17 15 13 21 21 C 1.46505 * 120.00526 * 33.05553 * 11 9 8 22 22 C 1.53000 * 109.46737 * 301.14830 * 21 11 9 23 23 C 1.52999 * 109.46789 * 61.14486 * 21 11 9 24 24 C 1.39151 * 120.05215 * 359.45947 * 8 7 6 25 25 C 1.39262 * 119.39245 * 0.54030 * 24 8 7 26 26 C 1.34197 * 125.01640 * 180.02562 * 2 1 3 27 27 C 1.50696 * 126.54466 * 359.97438 * 26 2 1 28 28 H 1.08997 * 109.46530 * 89.97918 * 1 2 3 29 29 H 1.08995 * 109.47143 * 209.97811 * 1 2 3 30 30 H 1.09000 * 109.47113 * 329.98369 * 1 2 3 31 31 H 1.07998 * 119.88483 * 359.94775 * 6 5 3 32 32 H 1.08006 * 119.66161 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47017 * 210.00247 * 12 11 9 34 34 H 1.09001 * 109.46688 * 329.99718 * 12 11 9 35 35 H 0.96999 * 120.00222 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.46980 * 181.14681 * 21 11 9 37 37 H 1.09000 * 109.47653 * 13.43427 * 22 21 11 38 38 H 1.08993 * 109.47287 * 133.44068 * 22 21 11 39 39 H 1.09008 * 109.46830 * 253.43480 * 22 21 11 40 40 H 1.08994 * 109.46977 * 104.33633 * 23 21 11 41 41 H 1.09007 * 109.47017 * 224.32956 * 23 21 11 42 42 H 1.08998 * 109.47524 * 344.33117 * 23 21 11 43 43 H 1.08001 * 120.30303 * 180.30408 * 24 8 7 44 44 H 1.09003 * 109.47099 * 89.97608 * 27 26 2 45 45 H 1.08997 * 109.47387 * 209.97681 * 27 26 2 46 46 H 1.08997 * 109.47413 * 329.97709 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2924 1.1207 0.0000 4 1 1.9612 2.0325 0.0009 5 6 3.6194 0.7642 -0.0006 6 6 4.8050 1.4968 -0.0004 7 6 6.0080 0.8557 -0.0006 8 6 6.0720 -0.5449 -0.0063 9 6 7.3835 -1.2234 -0.0131 10 8 7.5702 -2.1924 0.6970 11 7 8.3734 -0.7684 -0.8064 12 6 9.3337 -1.7076 -1.3912 13 6 8.8228 -2.1818 -2.7273 14 1 7.8775 -1.8193 -3.1035 15 6 9.5621 -3.0782 -3.4695 16 7 10.7134 -3.5191 -3.0116 17 14 8.9291 -3.6653 -5.1260 18 1 9.4199 -2.7573 -6.1936 19 1 9.4200 -5.0430 -5.3834 20 1 7.4441 -3.6624 -5.1177 21 6 8.4893 0.6654 -1.0841 22 6 7.2008 1.1632 -1.7419 23 6 8.7181 1.4217 0.2261 24 6 4.9007 -1.2960 -0.0005 25 6 3.6703 -0.6436 -0.0004 26 6 2.2771 -1.0991 -0.0005 27 6 1.8004 -2.5287 -0.0006 28 1 -0.3632 0.0004 -1.0277 29 1 -0.3633 -0.8901 0.5135 30 1 -0.3633 0.8898 0.5141 31 1 4.7705 2.5763 -0.0005 32 1 6.9211 1.4326 -0.0008 33 1 10.2938 -1.2093 -1.5253 34 1 9.4576 -2.5619 -0.7256 35 1 11.2334 -4.1501 -3.5335 36 1 9.3304 0.8387 -1.7553 37 1 6.4224 0.4079 -1.6340 38 1 6.8802 2.0868 -1.2602 39 1 7.3819 1.3496 -2.8006 40 1 9.7643 1.7194 0.2958 41 1 8.0856 2.3091 0.2487 42 1 8.4675 0.7754 1.0673 43 1 4.9453 -2.3751 0.0001 44 1 1.6847 -2.8730 -1.0283 45 1 2.5302 -3.1550 0.5125 46 1 0.8416 -2.5921 0.5139 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036164114.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:50 Heat of formation + Delta-G solvation = 70.626492 kcal Electronic energy + Delta-G solvation = -26811.565400 eV Core-core repulsion = 23282.738415 eV Total energy + Delta-G solvation = -3528.826985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69932 -41.42381 -38.50543 -37.34491 -35.21549 -34.17613 -33.35216 -31.70703 -31.18013 -29.35386 -28.77127 -27.93142 -26.77893 -25.35805 -23.66871 -23.36751 -22.35102 -20.23894 -19.63977 -18.69410 -18.66507 -17.73105 -17.55093 -16.78740 -16.38426 -16.13481 -15.94925 -15.39263 -15.27689 -14.99086 -14.71794 -14.64979 -14.12626 -14.03310 -13.82103 -13.68033 -13.62800 -13.54769 -13.29884 -13.19361 -13.10600 -12.80243 -12.76768 -12.54745 -12.49757 -12.19141 -12.14564 -11.97864 -11.69444 -11.53311 -11.13998 -10.82991 -10.66187 -10.25611 -9.37788 -8.87244 -8.42998 -8.23179 -6.40363 0.06240 0.39878 1.34622 1.37576 1.47993 1.69547 1.70825 2.19078 2.28683 2.41789 2.89634 3.04707 3.63209 3.75174 3.83503 3.89856 4.00344 4.15653 4.25211 4.28520 4.34581 4.46804 4.54095 4.66129 4.70723 4.75127 4.82483 4.83124 4.89158 4.91423 4.95596 5.00604 5.04186 5.11725 5.13871 5.19004 5.20415 5.24473 5.39461 5.45778 5.55578 5.59812 5.69219 5.87587 5.92006 6.05972 6.16599 6.68242 6.75913 6.77743 7.18945 7.35483 8.82859 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.004249 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.266489 B = 6588.424805 C = 7607.543958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.080 3.920 3 N -0.575 5.575 4 H 0.432 0.568 5 C 0.120 3.880 6 C -0.159 4.159 7 C -0.067 4.067 8 C -0.190 4.190 9 C 0.569 3.431 10 O -0.592 6.592 11 N -0.616 5.616 12 C 0.265 3.735 13 C -0.547 4.547 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.927 5.927 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.274 1.274 21 C 0.125 3.875 22 C -0.192 4.192 23 C -0.172 4.172 24 C -0.034 4.034 25 C -0.152 4.152 26 C -0.198 4.198 27 C -0.077 4.077 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.193 0.807 33 H 0.023 0.977 34 H -0.006 1.006 35 H 0.268 0.732 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.114 0.886 42 H 0.043 0.957 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.044 0.956 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.672 17.037 4.681 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.028 4.028 3 N -0.180 5.180 4 H 0.272 0.728 5 C 0.010 3.990 6 C -0.180 4.180 7 C -0.085 4.085 8 C -0.194 4.194 9 C 0.361 3.639 10 O -0.474 6.474 11 N -0.348 5.348 12 C 0.144 3.856 13 C -0.585 4.585 14 H 0.073 0.927 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.792 3.208 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.198 1.198 21 C 0.022 3.978 22 C -0.248 4.248 23 C -0.230 4.230 24 C -0.054 4.054 25 C -0.156 4.156 26 C -0.205 4.205 27 C -0.134 4.134 28 H 0.107 0.893 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.185 0.815 32 H 0.209 0.791 33 H 0.041 0.959 34 H 0.012 0.988 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.074 0.926 40 H 0.097 0.903 41 H 0.132 0.868 42 H 0.062 0.938 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.486 16.536 4.998 26.797 hybrid contribution 0.552 -1.027 -0.861 1.450 sum -19.935 15.508 4.137 25.593 Atomic orbital electron populations 1.20585 0.84552 1.05077 1.04246 1.20552 0.94870 0.84572 1.02802 1.41576 1.02840 1.09076 1.64473 0.72769 1.18470 0.86021 0.93143 1.01340 1.19882 0.87856 1.00856 1.09359 1.22419 1.01500 0.92251 0.92357 1.19703 0.91598 0.95784 1.12314 1.18689 0.84904 0.82524 0.77800 1.90636 1.83600 1.32325 1.40821 1.47973 1.29852 1.08355 1.48583 1.18784 0.87527 0.87604 0.91704 1.21754 1.06117 1.26725 1.03936 0.92736 1.25870 0.94953 0.95781 1.02326 1.70066 1.14091 1.32561 1.39920 0.85411 0.78406 0.77920 0.79072 1.18621 1.20445 1.19841 1.21387 1.00010 0.78553 0.97825 1.23674 0.97178 1.02819 1.01150 1.22671 1.04267 1.00749 0.95271 1.20414 0.90689 0.98524 0.95761 1.19136 0.92956 0.93596 1.09941 1.20374 0.89877 0.96481 1.13738 1.20135 1.01284 0.90152 1.01823 0.89323 0.88879 0.89262 0.81490 0.79104 0.95912 0.98761 0.92298 0.89267 0.90613 0.86744 0.92622 0.90330 0.86755 0.93791 0.88561 0.91885 0.93642 0.89250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.80 10.18 71.24 0.73 -0.08 16 2 C 0.08 1.49 7.08 40.85 0.29 1.78 16 3 N -0.57 -10.08 6.05 -175.79 -1.06 -11.14 16 4 H 0.43 4.04 8.96 -92.70 -0.83 3.21 16 5 C 0.12 3.02 7.27 39.19 0.28 3.30 16 6 C -0.16 -3.53 9.69 22.09 0.21 -3.31 16 7 C -0.07 -1.89 4.85 22.30 0.11 -1.78 16 8 C -0.19 -7.44 4.28 -20.09 -0.09 -7.53 16 9 C 0.57 27.77 5.82 86.73 0.50 28.27 16 10 O -0.59 -34.33 16.80 -3.94 -0.07 -34.40 16 11 N -0.62 -28.86 2.38 -805.75 -1.91 -30.78 16 12 C 0.26 15.17 5.32 85.63 0.46 15.62 16 13 C -0.55 -32.57 9.39 25.60 0.24 -32.33 16 14 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16 15 C 0.01 0.58 5.46 84.65 0.46 1.05 16 16 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16 17 Si 0.97 45.80 29.54 68.60 2.03 47.83 16 18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 21 C 0.13 4.24 3.27 44.99 0.15 4.38 16 22 C -0.19 -5.42 7.71 71.98 0.55 -4.87 16 23 C -0.17 -4.37 8.37 71.98 0.60 -3.77 16 24 C -0.03 -1.35 9.71 22.74 0.22 -1.13 16 25 C -0.15 -4.89 6.34 -20.21 -0.13 -5.02 16 26 C -0.20 -5.17 6.32 -18.61 -0.12 -5.29 16 27 C -0.08 -1.73 10.17 71.23 0.72 -1.00 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.09 0.73 7.04 -2.39 -0.02 0.72 16 30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16 32 H 0.19 4.53 1.03 -4.59 0.00 4.52 16 33 H 0.02 1.31 7.93 -2.39 -0.02 1.30 16 34 H -0.01 -0.38 7.37 -2.39 -0.02 -0.40 16 35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.09 3.08 7.80 -2.39 -0.02 3.06 16 37 H 0.08 2.62 4.01 -11.40 -0.05 2.57 16 38 H 0.11 2.12 5.21 -2.39 -0.01 2.11 16 39 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.11 1.83 6.16 -2.38 -0.01 1.81 16 42 H 0.04 1.34 6.83 -2.39 -0.02 1.32 16 43 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16 44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 46 H 0.09 1.41 7.06 -2.39 -0.02 1.40 16 Total: -1.00 -84.31 361.09 4.62 -79.69 By element: Atomic # 1 Polarization: 17.37 SS G_CDS: 0.15 Total: 17.52 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 5.20 Total: -11.70 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -2.69 Total: -98.94 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -0.07 Total: -34.40 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Total: -84.31 4.62 -79.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036164114.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.315 kcal (2) G-P(sol) polarization free energy of solvation -84.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds