Wall clock time and date at job start Tue Mar 31 2020 11:30:50
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.36851 * 125.02212 * 2 1
4 4 H 0.97006 * 125.00985 * 0.06299 * 3 2 1
5 5 C 1.37400 * 109.98319 * 180.02562 * 3 2 1
6 6 C 1.39370 * 133.24718 * 180.02562 * 5 3 2
7 7 C 1.36320 * 120.23195 * 179.97438 * 6 5 3
8 8 C 1.40204 * 120.67053 * 0.25200 * 7 6 5
9 9 C 1.47663 * 119.97411 * 179.70355 * 8 7 6
10 10 O 1.21571 * 119.99771 * 137.26503 * 9 8 7
11 11 N 1.34773 * 119.99551 * 317.26932 * 9 8 7
12 12 C 1.46501 * 119.99792 * 213.05532 * 11 9 8
13 13 C 1.50696 * 109.47514 * 89.99825 * 12 11 9
14 14 H 1.08004 * 119.99779 * 0.02562 * 13 12 11
15 15 C 1.37877 * 120.00525 * 180.02562 * 13 12 11
16 16 N 1.31516 * 119.99622 * 359.97438 * 15 13 12
17 17 Si 1.86797 * 120.00226 * 180.02562 * 15 13 12
18 18 H 1.48501 * 109.47319 * 89.99910 * 17 15 13
19 19 H 1.48505 * 109.46693 * 210.00227 * 17 15 13
20 20 H 1.48504 * 109.46943 * 329.99821 * 17 15 13
21 21 C 1.46505 * 120.00526 * 33.05553 * 11 9 8
22 22 C 1.53000 * 109.46737 * 301.14830 * 21 11 9
23 23 C 1.52999 * 109.46789 * 61.14486 * 21 11 9
24 24 C 1.39151 * 120.05215 * 359.45947 * 8 7 6
25 25 C 1.39262 * 119.39245 * 0.54030 * 24 8 7
26 26 C 1.34197 * 125.01640 * 180.02562 * 2 1 3
27 27 C 1.50696 * 126.54466 * 359.97438 * 26 2 1
28 28 H 1.08997 * 109.46530 * 89.97918 * 1 2 3
29 29 H 1.08995 * 109.47143 * 209.97811 * 1 2 3
30 30 H 1.09000 * 109.47113 * 329.98369 * 1 2 3
31 31 H 1.07998 * 119.88483 * 359.94775 * 6 5 3
32 32 H 1.08006 * 119.66161 * 179.97438 * 7 6 5
33 33 H 1.08998 * 109.47017 * 210.00247 * 12 11 9
34 34 H 1.09001 * 109.46688 * 329.99718 * 12 11 9
35 35 H 0.96999 * 120.00222 * 179.97438 * 16 15 13
36 36 H 1.08992 * 109.46980 * 181.14681 * 21 11 9
37 37 H 1.09000 * 109.47653 * 13.43427 * 22 21 11
38 38 H 1.08993 * 109.47287 * 133.44068 * 22 21 11
39 39 H 1.09008 * 109.46830 * 253.43480 * 22 21 11
40 40 H 1.08994 * 109.46977 * 104.33633 * 23 21 11
41 41 H 1.09007 * 109.47017 * 224.32956 * 23 21 11
42 42 H 1.08998 * 109.47524 * 344.33117 * 23 21 11
43 43 H 1.08001 * 120.30303 * 180.30408 * 24 8 7
44 44 H 1.09003 * 109.47099 * 89.97608 * 27 26 2
45 45 H 1.08997 * 109.47387 * 209.97681 * 27 26 2
46 46 H 1.08997 * 109.47413 * 329.97709 * 27 26 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 7 2.2924 1.1207 0.0000
4 1 1.9612 2.0325 0.0009
5 6 3.6194 0.7642 -0.0006
6 6 4.8050 1.4968 -0.0004
7 6 6.0080 0.8557 -0.0006
8 6 6.0720 -0.5449 -0.0063
9 6 7.3835 -1.2234 -0.0131
10 8 7.5702 -2.1924 0.6970
11 7 8.3734 -0.7684 -0.8064
12 6 9.3337 -1.7076 -1.3912
13 6 8.8228 -2.1818 -2.7273
14 1 7.8775 -1.8193 -3.1035
15 6 9.5621 -3.0782 -3.4695
16 7 10.7134 -3.5191 -3.0116
17 14 8.9291 -3.6653 -5.1260
18 1 9.4199 -2.7573 -6.1936
19 1 9.4200 -5.0430 -5.3834
20 1 7.4441 -3.6624 -5.1177
21 6 8.4893 0.6654 -1.0841
22 6 7.2008 1.1632 -1.7419
23 6 8.7181 1.4217 0.2261
24 6 4.9007 -1.2960 -0.0005
25 6 3.6703 -0.6436 -0.0004
26 6 2.2771 -1.0991 -0.0005
27 6 1.8004 -2.5287 -0.0006
28 1 -0.3632 0.0004 -1.0277
29 1 -0.3633 -0.8901 0.5135
30 1 -0.3633 0.8898 0.5141
31 1 4.7705 2.5763 -0.0005
32 1 6.9211 1.4326 -0.0008
33 1 10.2938 -1.2093 -1.5253
34 1 9.4576 -2.5619 -0.7256
35 1 11.2334 -4.1501 -3.5335
36 1 9.3304 0.8387 -1.7553
37 1 6.4224 0.4079 -1.6340
38 1 6.8802 2.0868 -1.2602
39 1 7.3819 1.3496 -2.8006
40 1 9.7643 1.7194 0.2958
41 1 8.0856 2.3091 0.2487
42 1 8.4675 0.7754 1.0673
43 1 4.9453 -2.3751 0.0001
44 1 1.6847 -2.8730 -1.0283
45 1 2.5302 -3.1550 0.5125
46 1 0.8416 -2.5921 0.5139
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000036164114.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:30:50
Heat of formation + Delta-G solvation = 70.626492 kcal
Electronic energy + Delta-G solvation = -26811.565400 eV
Core-core repulsion = 23282.738415 eV
Total energy + Delta-G solvation = -3528.826985 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.72 seconds
Orbital eigenvalues (eV)
-42.69932 -41.42381 -38.50543 -37.34491 -35.21549 -34.17613 -33.35216 -31.70703
-31.18013 -29.35386 -28.77127 -27.93142 -26.77893 -25.35805 -23.66871 -23.36751
-22.35102 -20.23894 -19.63977 -18.69410 -18.66507 -17.73105 -17.55093 -16.78740
-16.38426 -16.13481 -15.94925 -15.39263 -15.27689 -14.99086 -14.71794 -14.64979
-14.12626 -14.03310 -13.82103 -13.68033 -13.62800 -13.54769 -13.29884 -13.19361
-13.10600 -12.80243 -12.76768 -12.54745 -12.49757 -12.19141 -12.14564 -11.97864
-11.69444 -11.53311 -11.13998 -10.82991 -10.66187 -10.25611 -9.37788 -8.87244
-8.42998 -8.23179 -6.40363 0.06240 0.39878 1.34622 1.37576 1.47993
1.69547 1.70825 2.19078 2.28683 2.41789 2.89634 3.04707 3.63209
3.75174 3.83503 3.89856 4.00344 4.15653 4.25211 4.28520 4.34581
4.46804 4.54095 4.66129 4.70723 4.75127 4.82483 4.83124 4.89158
4.91423 4.95596 5.00604 5.04186 5.11725 5.13871 5.19004 5.20415
5.24473 5.39461 5.45778 5.55578 5.59812 5.69219 5.87587 5.92006
6.05972 6.16599 6.68242 6.75913 6.77743 7.18945 7.35483 8.82859
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013856 B = 0.004249 C = 0.003680
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2020.266489 B = 6588.424805 C = 7607.543958
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.088 4.088
2 C 0.080 3.920
3 N -0.575 5.575
4 H 0.432 0.568
5 C 0.120 3.880
6 C -0.159 4.159
7 C -0.067 4.067
8 C -0.190 4.190
9 C 0.569 3.431
10 O -0.592 6.592
11 N -0.616 5.616
12 C 0.265 3.735
13 C -0.547 4.547
14 H 0.054 0.946
15 C 0.010 3.990
16 N -0.927 5.927
17 Si 0.968 3.032
18 H -0.261 1.261
19 H -0.279 1.279
20 H -0.274 1.274
21 C 0.125 3.875
22 C -0.192 4.192
23 C -0.172 4.172
24 C -0.034 4.034
25 C -0.152 4.152
26 C -0.198 4.198
27 C -0.077 4.077
28 H 0.088 0.912
29 H 0.093 0.907
30 H 0.089 0.911
31 H 0.168 0.832
32 H 0.193 0.807
33 H 0.023 0.977
34 H -0.006 1.006
35 H 0.268 0.732
36 H 0.089 0.911
37 H 0.076 0.924
38 H 0.114 0.886
39 H 0.055 0.945
40 H 0.078 0.922
41 H 0.114 0.886
42 H 0.043 0.957
43 H 0.096 0.904
44 H 0.062 0.938
45 H 0.044 0.956
46 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.672 17.037 4.681 27.194
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.028 4.028
3 N -0.180 5.180
4 H 0.272 0.728
5 C 0.010 3.990
6 C -0.180 4.180
7 C -0.085 4.085
8 C -0.194 4.194
9 C 0.361 3.639
10 O -0.474 6.474
11 N -0.348 5.348
12 C 0.144 3.856
13 C -0.585 4.585
14 H 0.073 0.927
15 C -0.189 4.189
16 N -0.566 5.566
17 Si 0.792 3.208
18 H -0.186 1.186
19 H -0.204 1.204
20 H -0.198 1.198
21 C 0.022 3.978
22 C -0.248 4.248
23 C -0.230 4.230
24 C -0.054 4.054
25 C -0.156 4.156
26 C -0.205 4.205
27 C -0.134 4.134
28 H 0.107 0.893
29 H 0.111 0.889
30 H 0.107 0.893
31 H 0.185 0.815
32 H 0.209 0.791
33 H 0.041 0.959
34 H 0.012 0.988
35 H 0.077 0.923
36 H 0.107 0.893
37 H 0.094 0.906
38 H 0.133 0.867
39 H 0.074 0.926
40 H 0.097 0.903
41 H 0.132 0.868
42 H 0.062 0.938
43 H 0.114 0.886
44 H 0.081 0.919
45 H 0.064 0.936
46 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges -20.486 16.536 4.998 26.797
hybrid contribution 0.552 -1.027 -0.861 1.450
sum -19.935 15.508 4.137 25.593
Atomic orbital electron populations
1.20585 0.84552 1.05077 1.04246 1.20552 0.94870 0.84572 1.02802
1.41576 1.02840 1.09076 1.64473 0.72769 1.18470 0.86021 0.93143
1.01340 1.19882 0.87856 1.00856 1.09359 1.22419 1.01500 0.92251
0.92357 1.19703 0.91598 0.95784 1.12314 1.18689 0.84904 0.82524
0.77800 1.90636 1.83600 1.32325 1.40821 1.47973 1.29852 1.08355
1.48583 1.18784 0.87527 0.87604 0.91704 1.21754 1.06117 1.26725
1.03936 0.92736 1.25870 0.94953 0.95781 1.02326 1.70066 1.14091
1.32561 1.39920 0.85411 0.78406 0.77920 0.79072 1.18621 1.20445
1.19841 1.21387 1.00010 0.78553 0.97825 1.23674 0.97178 1.02819
1.01150 1.22671 1.04267 1.00749 0.95271 1.20414 0.90689 0.98524
0.95761 1.19136 0.92956 0.93596 1.09941 1.20374 0.89877 0.96481
1.13738 1.20135 1.01284 0.90152 1.01823 0.89323 0.88879 0.89262
0.81490 0.79104 0.95912 0.98761 0.92298 0.89267 0.90613 0.86744
0.92622 0.90330 0.86755 0.93791 0.88561 0.91885 0.93642 0.89250
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -0.80 10.18 71.24 0.73 -0.08 16
2 C 0.08 1.49 7.08 40.85 0.29 1.78 16
3 N -0.57 -10.08 6.05 -175.79 -1.06 -11.14 16
4 H 0.43 4.04 8.96 -92.70 -0.83 3.21 16
5 C 0.12 3.02 7.27 39.19 0.28 3.30 16
6 C -0.16 -3.53 9.69 22.09 0.21 -3.31 16
7 C -0.07 -1.89 4.85 22.30 0.11 -1.78 16
8 C -0.19 -7.44 4.28 -20.09 -0.09 -7.53 16
9 C 0.57 27.77 5.82 86.73 0.50 28.27 16
10 O -0.59 -34.33 16.80 -3.94 -0.07 -34.40 16
11 N -0.62 -28.86 2.38 -805.75 -1.91 -30.78 16
12 C 0.26 15.17 5.32 85.63 0.46 15.62 16
13 C -0.55 -32.57 9.39 25.60 0.24 -32.33 16
14 H 0.05 3.22 7.81 -2.91 -0.02 3.20 16
15 C 0.01 0.58 5.46 84.65 0.46 1.05 16
16 N -0.93 -57.31 13.29 21.45 0.28 -57.02 16
17 Si 0.97 45.80 29.54 68.60 2.03 47.83 16
18 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16
19 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16
20 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16
21 C 0.13 4.24 3.27 44.99 0.15 4.38 16
22 C -0.19 -5.42 7.71 71.98 0.55 -4.87 16
23 C -0.17 -4.37 8.37 71.98 0.60 -3.77 16
24 C -0.03 -1.35 9.71 22.74 0.22 -1.13 16
25 C -0.15 -4.89 6.34 -20.21 -0.13 -5.02 16
26 C -0.20 -5.17 6.32 -18.61 -0.12 -5.29 16
27 C -0.08 -1.73 10.17 71.23 0.72 -1.00 16
28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
29 H 0.09 0.73 7.04 -2.39 -0.02 0.72 16
30 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16
31 H 0.17 2.11 8.06 -2.91 -0.02 2.09 16
32 H 0.19 4.53 1.03 -4.59 0.00 4.52 16
33 H 0.02 1.31 7.93 -2.39 -0.02 1.30 16
34 H -0.01 -0.38 7.37 -2.39 -0.02 -0.40 16
35 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16
36 H 0.09 3.08 7.80 -2.39 -0.02 3.06 16
37 H 0.08 2.62 4.01 -11.40 -0.05 2.57 16
38 H 0.11 2.12 5.21 -2.39 -0.01 2.11 16
39 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16
40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16
41 H 0.11 1.83 6.16 -2.38 -0.01 1.81 16
42 H 0.04 1.34 6.83 -2.39 -0.02 1.32 16
43 H 0.10 4.19 8.06 -2.91 -0.02 4.17 16
44 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16
45 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16
46 H 0.09 1.41 7.06 -2.39 -0.02 1.40 16
Total: -1.00 -84.31 361.09 4.62 -79.69
By element:
Atomic # 1 Polarization: 17.37 SS G_CDS: 0.15 Total: 17.52 kcal
Atomic # 6 Polarization: -16.90 SS G_CDS: 5.20 Total: -11.70 kcal
Atomic # 7 Polarization: -96.24 SS G_CDS: -2.69 Total: -98.94 kcal
Atomic # 8 Polarization: -34.33 SS G_CDS: -0.07 Total: -34.40 kcal
Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal
Total: -84.31 4.62 -79.69 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000036164114.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 150.315 kcal
(2) G-P(sol) polarization free energy of solvation -84.308 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.007 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.689 kcal
(6) G-S(sol) free energy of system = (1) + (5) 70.626 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds