Wall clock time and date at job start Tue Mar 31 2020 10:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00443 * 2 1 4 4 C 1.38210 * 120.00331 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99758 * 359.94907 * 5 4 3 7 7 C 1.38213 * 119.99611 * 179.72787 * 2 1 3 8 8 C 1.50705 * 120.00410 * 359.97438 * 7 2 1 9 9 H 1.08998 * 110.84948 * 3.79408 * 8 7 2 10 10 C 1.54624 * 110.97063 * 127.62056 * 8 7 2 11 11 C 1.51278 * 104.19739 * 142.92116 * 10 8 7 12 12 O 1.21278 * 124.94295 * 163.75203 * 11 10 8 13 13 N 1.34420 * 110.11018 * 343.74637 * 11 10 8 14 14 C 1.46508 * 124.34479 * 179.61181 * 13 11 10 15 15 N 1.46496 * 109.47344 * 269.97718 * 14 13 11 16 16 C 1.36941 * 119.99832 * 89.99922 * 15 14 13 17 17 H 1.07997 * 119.99866 * 217.89526 * 16 15 14 18 18 C 1.38810 * 119.99713 * 37.90290 * 16 15 14 19 19 N 1.31620 * 120.00313 * 20.44822 * 18 16 15 20 20 Si 1.86802 * 119.99752 * 200.45276 * 18 16 15 21 21 H 1.48494 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47342 * 119.99741 * 20 18 16 23 23 H 1.48504 * 109.46912 * 239.99552 * 20 18 16 24 24 C 1.46501 * 120.00043 * 270.00431 * 15 14 13 25 25 C 1.53005 * 117.49752 * 194.26544 * 24 15 14 26 26 C 1.53003 * 117.49832 * 125.64255 * 24 15 14 27 27 C 1.46758 * 111.30526 * 359.59463 * 13 11 10 28 28 H 1.09004 * 109.47480 * 89.99564 * 1 2 3 29 29 H 1.08998 * 109.47166 * 330.00257 * 1 2 3 30 30 H 1.08990 * 109.47743 * 210.00090 * 1 2 3 31 31 H 1.07997 * 119.99802 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00146 * 179.97438 * 4 3 2 33 33 H 1.07996 * 120.00293 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99560 * 180.02562 * 6 5 4 35 35 H 1.09004 * 110.48965 * 261.60195 * 10 8 7 36 36 H 1.09004 * 110.48351 * 24.24106 * 10 8 7 37 37 H 1.09000 * 109.47133 * 29.98265 * 14 13 11 38 38 H 1.08999 * 109.46612 * 149.97648 * 14 13 11 39 39 H 0.97005 * 120.00116 * 174.91643 * 19 18 16 40 40 H 1.08993 * 115.54827 * 339.96809 * 24 15 14 41 41 H 1.09003 * 117.49437 * 359.97438 * 25 24 15 42 42 H 1.09000 * 117.50060 * 145.01720 * 25 24 15 43 43 H 1.08995 * 117.49630 * 214.97365 * 26 24 15 44 44 H 1.08998 * 117.49941 * 359.97438 * 26 24 15 45 45 H 1.08999 * 110.24508 * 258.01110 * 27 13 11 46 46 H 1.08994 * 110.24726 * 136.01499 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0032 7 6 2.1979 -1.1970 0.0057 8 6 1.4444 -2.5021 0.0125 9 1 0.3702 -2.3302 -0.0554 10 6 1.9306 -3.4277 -1.1267 11 6 1.8865 -4.8140 -0.5228 12 8 1.9205 -5.8485 -1.1549 13 7 1.8042 -4.7323 0.8164 14 6 1.7349 -5.8894 1.7124 15 7 0.3334 -6.2587 1.9258 16 6 -0.2724 -7.1585 1.0900 17 1 -1.3037 -7.0181 0.8017 18 6 0.4389 -8.2512 0.6137 19 7 1.5205 -8.6579 1.2439 20 14 -0.1388 -9.1444 -0.9218 21 1 -1.3707 -8.4955 -1.4380 22 1 0.9234 -9.0858 -1.9578 23 1 -0.4288 -10.5626 -0.5899 24 6 -0.4200 -5.6652 3.0332 25 6 -1.7494 -6.3198 3.4142 26 6 -1.7399 -4.9685 2.6964 27 6 1.7930 -3.3353 1.2657 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8899 0.5138 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 5.3517 -0.0003 0.0016 34 1 4.1206 -2.1324 0.0045 35 1 1.2596 -3.3632 -1.9834 36 1 2.9489 -3.1709 -1.4186 37 1 2.2676 -6.7283 1.2643 38 1 2.1937 -5.6366 2.6682 39 1 1.9757 -9.4644 0.9552 40 1 0.1816 -5.2419 3.8375 41 1 -2.0636 -7.1918 2.8405 42 1 -2.0226 -6.3274 4.4693 43 1 -2.0069 -4.0872 3.2795 44 1 -2.0475 -4.9515 1.6509 45 1 2.7751 -3.0532 1.6450 46 1 1.0352 -3.1928 2.0361 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076919337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:54 Heat of formation + Delta-G solvation = 43.847582 kcal Electronic energy + Delta-G solvation = -26924.403876 eV Core-core repulsion = 23394.415670 eV Total energy + Delta-G solvation = -3529.988206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.33218 -38.84303 -36.91760 -35.63667 -33.80726 -32.99022 -32.19763 -30.43744 -29.11022 -27.17858 -26.67436 -25.37275 -23.71966 -22.79621 -21.43826 -21.38522 -20.17451 -19.88251 -18.71896 -16.96435 -16.54661 -16.10568 -15.51503 -15.25852 -14.96483 -14.87468 -14.33237 -14.11571 -13.93456 -13.76197 -13.29468 -13.14714 -13.09660 -12.72858 -12.66852 -12.43302 -12.12271 -12.10292 -11.82598 -11.37175 -11.25995 -11.09225 -10.96004 -10.83350 -10.72675 -10.61450 -10.45315 -10.34502 -9.95025 -9.71704 -9.40369 -8.99990 -8.80300 -8.55892 -8.37298 -7.86364 -6.60591 -5.86692 -3.40322 1.26189 1.30946 3.38478 3.51017 3.55454 3.59318 3.66750 4.02757 4.52346 4.57387 4.69301 4.85145 4.89082 4.94238 4.94844 5.04810 5.19776 5.24895 5.28098 5.35934 5.47227 5.55187 5.60386 5.62650 5.73411 5.82834 5.86476 5.93051 6.01665 6.06826 6.06884 6.09635 6.17214 6.18424 6.30247 6.42405 6.42660 6.45615 6.56618 6.64058 6.92896 6.94033 7.15197 7.32405 7.57631 7.85116 8.15309 8.50781 9.12481 9.16683 9.76322 10.27894 11.19870 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.004222 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.176909 B = 6630.119921 C = 7381.833975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.079 4.079 3 C -0.121 4.121 4 C -0.124 4.124 5 C -0.124 4.124 6 C -0.109 4.109 7 C -0.064 4.064 8 C -0.067 4.067 9 H 0.099 0.901 10 C -0.150 4.150 11 C 0.514 3.486 12 O -0.519 6.519 13 N -0.617 5.617 14 C 0.358 3.642 15 N -0.538 5.538 16 C -0.271 4.271 17 H 0.058 0.942 18 C 0.041 3.959 19 N -0.889 5.889 20 Si 0.907 3.093 21 H -0.278 1.278 22 H -0.281 1.281 23 H -0.293 1.293 24 C 0.121 3.879 25 C -0.192 4.192 26 C -0.225 4.225 27 C 0.112 3.888 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.127 0.873 38 H 0.047 0.953 39 H 0.258 0.742 40 H 0.087 0.913 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.060 0.940 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.537 19.187 0.534 19.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.079 4.079 3 C -0.139 4.139 4 C -0.142 4.142 5 C -0.142 4.142 6 C -0.127 4.127 7 C -0.065 4.065 8 C -0.086 4.086 9 H 0.117 0.883 10 C -0.191 4.191 11 C 0.299 3.701 12 O -0.394 6.394 13 N -0.356 5.356 14 C 0.152 3.848 15 N -0.255 5.255 16 C -0.400 4.400 17 H 0.076 0.924 18 C -0.160 4.160 19 N -0.530 5.530 20 Si 0.737 3.263 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.220 1.220 24 C 0.012 3.988 25 C -0.231 4.231 26 C -0.266 4.266 27 C -0.013 4.013 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.137 0.863 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.110 0.890 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.101 0.899 45 H 0.078 0.922 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 2.737 18.363 0.205 18.567 hybrid contribution -0.398 -0.200 -0.710 0.838 sum 2.339 18.163 -0.505 18.320 Atomic orbital electron populations 1.20891 0.91280 1.03047 1.02521 1.19776 0.96057 0.92490 0.99589 1.20980 0.94246 0.97285 1.01421 1.21091 0.94306 0.97930 1.00830 1.21098 0.99765 0.92456 1.00910 1.21054 0.93691 0.98301 0.99695 1.19543 0.93433 0.93637 0.99859 1.21190 1.00452 0.91129 0.95819 0.88303 1.22549 1.03387 0.94487 0.98668 1.20589 0.76171 0.89972 0.83370 1.90730 1.49584 1.33989 1.65084 1.50206 1.71411 1.06518 1.07450 1.21342 0.86436 0.86437 0.90566 1.43971 1.09254 1.44773 1.27502 1.18792 0.97290 1.02140 1.21758 0.92398 1.25055 0.97004 0.95868 0.98119 1.69779 1.20747 1.23011 1.39447 0.86191 0.78434 0.78009 0.83711 1.20350 1.20719 1.22045 1.21198 0.86422 0.99026 0.92167 1.23043 1.04470 0.96752 0.98794 1.23321 1.08051 0.94783 1.00417 1.21991 1.00777 0.82680 0.95879 0.91102 0.91661 0.90703 0.86311 0.86402 0.86244 0.85829 0.89016 0.88736 0.85561 0.93474 0.93183 0.89518 0.88224 0.90787 0.91028 0.89856 0.92164 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.11 9.37 36.00 0.34 -0.77 16 2 C -0.08 -0.84 5.88 -104.63 -0.62 -1.46 16 3 C -0.12 -1.17 9.70 -39.59 -0.38 -1.55 16 4 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 5 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.23 8.06 -39.58 -0.32 -1.55 16 7 C -0.06 -0.75 4.96 -104.62 -0.52 -1.27 16 8 C -0.07 -0.89 3.09 -90.14 -0.28 -1.17 16 9 H 0.10 1.29 5.67 -51.93 -0.29 1.00 16 10 C -0.15 -2.31 6.30 -26.75 -0.17 -2.48 16 11 C 0.51 10.83 8.02 -10.86 -0.09 10.75 16 12 O -0.52 -13.62 17.59 5.56 0.10 -13.52 16 13 N -0.62 -12.19 3.17 -176.13 -0.56 -12.75 16 14 C 0.36 8.23 6.13 -63.75 -0.39 7.84 16 15 N -0.54 -13.01 3.02 -169.34 -0.51 -13.53 16 16 C -0.27 -7.41 8.04 -15.06 -0.12 -7.53 16 17 H 0.06 1.64 7.21 -52.49 -0.38 1.26 16 18 C 0.04 1.17 4.98 -17.43 -0.09 1.08 16 19 N -0.89 -25.71 11.43 55.49 0.63 -25.08 16 20 Si 0.91 23.50 29.60 -169.99 -5.03 18.47 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.28 -7.60 7.11 56.52 0.40 -7.19 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 24 C 0.12 2.50 6.62 -67.93 -0.45 2.05 16 25 C -0.19 -3.77 9.81 -26.72 -0.26 -4.03 16 26 C -0.22 -4.19 10.08 -26.73 -0.27 -4.46 16 27 C 0.11 1.67 6.84 -3.13 -0.02 1.65 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.50 8.09 -51.93 -0.42 0.08 16 30 H 0.07 0.73 6.16 -51.93 -0.32 0.41 16 31 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 32 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 34 H 0.12 1.37 7.33 -52.49 -0.38 0.98 16 35 H 0.09 1.37 8.14 -51.93 -0.42 0.94 16 36 H 0.09 1.31 6.64 -51.93 -0.34 0.97 16 37 H 0.13 3.44 5.28 -51.93 -0.27 3.16 16 38 H 0.05 0.98 8.04 -51.93 -0.42 0.57 16 39 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 40 H 0.09 1.62 8.10 -51.93 -0.42 1.20 16 41 H 0.10 2.21 6.96 -51.93 -0.36 1.85 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.71 7.98 -51.93 -0.41 1.30 16 45 H 0.06 0.82 7.16 -51.93 -0.37 0.45 16 46 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -31.78 371.92 -11.12 -42.89 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -6.92 Total: 3.99 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -4.43 Total: -6.09 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.44 Total: -51.36 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.10 Total: -13.52 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.03 Total: 18.47 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.78 -11.12 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076919337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.742 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds