Wall clock time and date at job start Tue Mar 31 2020 10:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38254 * 120.00443 * 2 1 4 4 C 1.38210 * 120.00331 * 179.97438 * 3 2 1 5 5 C 1.38264 * 119.99965 * 359.97438 * 4 3 2 6 6 C 1.38216 * 119.99758 * 359.94907 * 5 4 3 7 7 C 1.38213 * 119.99611 * 179.72787 * 2 1 3 8 8 C 1.50705 * 120.00410 * 359.97438 * 7 2 1 9 9 H 1.08998 * 110.84948 * 3.79408 * 8 7 2 10 10 C 1.54624 * 110.97063 * 127.62056 * 8 7 2 11 11 C 1.51278 * 104.19739 * 142.92116 * 10 8 7 12 12 O 1.21278 * 124.94295 * 163.75203 * 11 10 8 13 13 N 1.34420 * 110.11018 * 343.74637 * 11 10 8 14 14 C 1.46508 * 124.34479 * 179.61181 * 13 11 10 15 15 N 1.46496 * 109.47344 * 269.97718 * 14 13 11 16 16 C 1.36941 * 119.99832 * 89.99922 * 15 14 13 17 17 H 1.07997 * 119.99866 * 217.89526 * 16 15 14 18 18 C 1.38810 * 119.99713 * 37.90290 * 16 15 14 19 19 N 1.31620 * 120.00313 * 20.44822 * 18 16 15 20 20 Si 1.86802 * 119.99752 * 200.45276 * 18 16 15 21 21 H 1.48494 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47342 * 119.99741 * 20 18 16 23 23 H 1.48504 * 109.46912 * 239.99552 * 20 18 16 24 24 C 1.46501 * 120.00043 * 270.00431 * 15 14 13 25 25 C 1.53005 * 117.49752 * 194.26544 * 24 15 14 26 26 C 1.53003 * 117.49832 * 125.64255 * 24 15 14 27 27 C 1.46758 * 111.30526 * 359.59463 * 13 11 10 28 28 H 1.09004 * 109.47480 * 89.99564 * 1 2 3 29 29 H 1.08998 * 109.47166 * 330.00257 * 1 2 3 30 30 H 1.08990 * 109.47743 * 210.00090 * 1 2 3 31 31 H 1.07997 * 119.99802 * 359.97438 * 3 2 1 32 32 H 1.08003 * 120.00146 * 179.97438 * 4 3 2 33 33 H 1.07996 * 120.00293 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.99560 * 180.02562 * 6 5 4 35 35 H 1.09004 * 110.48965 * 261.60195 * 10 8 7 36 36 H 1.09004 * 110.48351 * 24.24106 * 10 8 7 37 37 H 1.09000 * 109.47133 * 29.98265 * 14 13 11 38 38 H 1.08999 * 109.46612 * 149.97648 * 14 13 11 39 39 H 0.97005 * 120.00116 * 174.91643 * 19 18 16 40 40 H 1.08993 * 115.54827 * 339.96809 * 24 15 14 41 41 H 1.09003 * 117.49437 * 359.97438 * 25 24 15 42 42 H 1.09000 * 117.50060 * 145.01720 * 25 24 15 43 43 H 1.08995 * 117.49630 * 214.97365 * 26 24 15 44 44 H 1.08998 * 117.49941 * 359.97438 * 26 24 15 45 45 H 1.08999 * 110.24508 * 258.01110 * 27 13 11 46 46 H 1.08994 * 110.24726 * 136.01499 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1972 0.0005 5 6 4.2717 -0.0002 0.0016 6 6 3.5806 -1.1971 0.0032 7 6 2.1979 -1.1970 0.0057 8 6 1.4444 -2.5021 0.0125 9 1 0.3702 -2.3302 -0.0554 10 6 1.9306 -3.4277 -1.1267 11 6 1.8865 -4.8140 -0.5228 12 8 1.9205 -5.8485 -1.1549 13 7 1.8042 -4.7323 0.8164 14 6 1.7349 -5.8894 1.7124 15 7 0.3334 -6.2587 1.9258 16 6 -0.2724 -7.1585 1.0900 17 1 -1.3037 -7.0181 0.8017 18 6 0.4389 -8.2512 0.6137 19 7 1.5205 -8.6579 1.2439 20 14 -0.1388 -9.1444 -0.9218 21 1 -1.3707 -8.4955 -1.4380 22 1 0.9234 -9.0858 -1.9578 23 1 -0.4288 -10.5626 -0.5899 24 6 -0.4200 -5.6652 3.0332 25 6 -1.7494 -6.3198 3.4142 26 6 -1.7399 -4.9685 2.6964 27 6 1.7930 -3.3353 1.2657 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 0.8900 0.5138 30 1 -0.3634 -0.8899 0.5138 31 1 1.6584 2.1326 -0.0004 32 1 4.1205 2.1325 0.0001 33 1 5.3517 -0.0003 0.0016 34 1 4.1206 -2.1324 0.0045 35 1 1.2596 -3.3632 -1.9834 36 1 2.9489 -3.1709 -1.4186 37 1 2.2676 -6.7283 1.2643 38 1 2.1937 -5.6366 2.6682 39 1 1.9757 -9.4644 0.9552 40 1 0.1816 -5.2419 3.8375 41 1 -2.0636 -7.1918 2.8405 42 1 -2.0226 -6.3274 4.4693 43 1 -2.0069 -4.0872 3.2795 44 1 -2.0475 -4.9515 1.6509 45 1 2.7751 -3.0532 1.6450 46 1 1.0352 -3.1928 2.0361 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076919337.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:53 Heat of formation + Delta-G solvation = 27.545579 kcal Electronic energy + Delta-G solvation = -26925.110784 eV Core-core repulsion = 23394.415670 eV Total energy + Delta-G solvation = -3530.695114 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.53691 -40.00390 -38.62156 -37.17111 -35.46692 -34.12645 -33.43147 -32.03861 -30.42028 -28.31145 -27.64111 -27.19922 -25.24753 -24.03105 -22.95200 -22.25953 -21.76784 -21.02607 -20.36524 -18.55866 -17.82699 -17.52352 -17.05058 -16.66068 -16.41172 -16.03566 -15.88897 -15.61585 -15.33891 -14.89444 -14.69712 -14.38291 -14.22545 -13.97229 -13.84969 -13.63041 -13.49925 -13.11370 -13.01867 -12.96311 -12.83903 -12.75320 -12.42133 -12.36502 -12.22525 -12.16162 -11.93897 -11.75869 -11.54025 -11.44586 -10.98518 -10.63330 -10.41976 -9.61799 -9.49789 -9.38108 -8.55629 -7.97311 -5.52055 0.47652 0.55851 1.30588 1.43926 1.44941 1.83887 2.37516 2.53078 2.87676 3.19559 3.44999 3.49879 3.51899 3.70782 3.77878 4.04741 4.09267 4.21532 4.28548 4.29770 4.34036 4.41669 4.50808 4.52808 4.55553 4.65134 4.74643 4.76375 4.85060 4.86947 4.90575 4.94864 5.01864 5.05192 5.15713 5.24974 5.33948 5.39547 5.41639 5.56149 5.63823 5.67462 5.70439 5.82269 5.95702 6.20059 6.39201 6.59314 7.09557 7.51681 7.77758 8.24327 9.04546 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016841 B = 0.004222 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.176909 B = 6630.119921 C = 7381.833975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.085 4.085 3 C -0.126 4.126 4 C -0.122 4.122 5 C -0.131 4.131 6 C -0.121 4.121 7 C -0.078 4.078 8 C -0.049 4.049 9 H 0.103 0.897 10 C -0.136 4.136 11 C 0.497 3.503 12 O -0.583 6.583 13 N -0.617 5.617 14 C 0.363 3.637 15 N -0.555 5.555 16 C -0.259 4.259 17 H 0.042 0.958 18 C 0.000 4.000 19 N -0.910 5.910 20 Si 0.942 3.058 21 H -0.276 1.276 22 H -0.302 1.302 23 H -0.281 1.281 24 C 0.101 3.899 25 C -0.193 4.193 26 C -0.199 4.199 27 C 0.112 3.888 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.097 0.903 36 H 0.111 0.889 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.253 0.747 40 H 0.114 0.886 41 H 0.066 0.934 42 H 0.105 0.895 43 H 0.111 0.889 44 H 0.059 0.941 45 H 0.078 0.922 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 23.000 1.697 23.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.085 4.085 3 C -0.143 4.143 4 C -0.140 4.140 5 C -0.149 4.149 6 C -0.139 4.139 7 C -0.078 4.078 8 C -0.068 4.068 9 H 0.121 0.879 10 C -0.177 4.177 11 C 0.284 3.716 12 O -0.463 6.463 13 N -0.354 5.354 14 C 0.156 3.844 15 N -0.273 5.273 16 C -0.389 4.389 17 H 0.060 0.940 18 C -0.199 4.199 19 N -0.553 5.553 20 Si 0.772 3.228 21 H -0.201 1.201 22 H -0.230 1.230 23 H -0.208 1.208 24 C -0.006 4.006 25 C -0.232 4.232 26 C -0.239 4.239 27 C -0.011 4.011 28 H 0.093 0.907 29 H 0.100 0.900 30 H 0.086 0.914 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.137 0.863 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.099 0.901 38 H 0.086 0.914 39 H 0.062 0.938 40 H 0.132 0.868 41 H 0.085 0.915 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.312 22.236 1.403 22.400 hybrid contribution -0.253 -1.229 -1.033 1.625 sum 2.059 21.007 0.370 21.111 Atomic orbital electron populations 1.20916 0.90410 1.03495 1.02923 1.19976 0.96841 0.92453 0.99213 1.21288 0.94615 0.97777 1.00655 1.21444 0.94489 0.98707 0.99341 1.21346 1.00783 0.92241 1.00506 1.21121 0.93661 0.98815 1.00305 1.19368 0.93519 0.92980 1.01966 1.21048 1.00932 0.91331 0.93440 0.87875 1.22462 1.04750 0.91132 0.99322 1.21547 0.74925 0.91328 0.83767 1.90686 1.52423 1.36770 1.66421 1.49998 1.70317 1.08055 1.07020 1.20908 0.85859 0.86364 0.91282 1.44013 1.09652 1.45019 1.28632 1.18738 0.96507 1.02002 1.21679 0.94006 1.25465 0.97639 0.97022 0.99760 1.69870 1.21688 1.23313 1.40466 0.85616 0.77356 0.78163 0.81622 1.20111 1.22981 1.20770 1.21478 0.87044 1.00062 0.92063 1.23044 1.03694 0.96203 1.00270 1.23244 1.05520 0.95607 0.99533 1.22211 1.02149 0.79799 0.96918 0.90712 0.90033 0.91432 0.84150 0.84007 0.84621 0.86324 0.88459 0.87058 0.90055 0.91357 0.93804 0.86825 0.91528 0.87636 0.87108 0.92256 0.90367 0.90224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.37 71.23 0.67 -1.18 16 2 C -0.08 -1.54 5.88 -19.87 -0.12 -1.66 16 3 C -0.13 -1.95 9.70 22.27 0.22 -1.73 16 4 C -0.12 -1.82 10.05 22.27 0.22 -1.60 16 5 C -0.13 -2.21 10.05 22.27 0.22 -1.99 16 6 C -0.12 -2.44 8.06 22.27 0.18 -2.26 16 7 C -0.08 -1.63 4.96 -19.86 -0.10 -1.73 16 8 C -0.05 -1.21 3.09 -10.48 -0.03 -1.24 16 9 H 0.10 2.48 5.67 -2.39 -0.01 2.46 16 10 C -0.14 -4.11 6.30 30.58 0.19 -3.92 16 11 C 0.50 21.43 8.02 87.90 0.71 22.14 16 12 O -0.58 -32.16 17.59 -3.02 -0.05 -32.22 16 13 N -0.62 -24.43 3.17 -829.75 -2.63 -27.06 16 14 C 0.36 16.92 6.13 170.96 1.05 17.97 16 15 N -0.55 -27.02 3.02 -689.68 -2.09 -29.10 16 16 C -0.26 -14.58 8.04 84.03 0.68 -13.90 16 17 H 0.04 2.45 7.21 -2.91 -0.02 2.43 16 18 C 0.00 0.00 4.98 84.86 0.42 0.42 16 19 N -0.91 -54.84 11.43 21.65 0.25 -54.60 16 20 Si 0.94 50.06 29.60 68.60 2.03 52.09 16 21 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 22 H -0.30 -16.98 7.11 99.48 0.71 -16.28 16 23 H -0.28 -14.20 7.11 99.48 0.71 -13.49 16 24 C 0.10 4.00 6.62 44.99 0.30 4.30 16 25 C -0.19 -7.28 9.81 30.60 0.30 -6.98 16 26 C -0.20 -6.90 10.08 30.60 0.31 -6.59 16 27 C 0.11 3.16 6.84 86.83 0.59 3.76 16 28 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 29 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 30 H 0.07 1.13 6.16 -2.39 -0.01 1.11 16 31 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 32 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.14 1.77 8.06 -2.91 -0.02 1.75 16 34 H 0.12 2.44 7.33 -2.91 -0.02 2.42 16 35 H 0.10 2.84 8.14 -2.38 -0.02 2.82 16 36 H 0.11 2.98 6.64 -2.38 -0.02 2.97 16 37 H 0.08 4.63 5.28 -2.39 -0.01 4.62 16 38 H 0.07 2.83 8.04 -2.39 -0.02 2.81 16 39 H 0.25 14.92 8.32 -92.70 -0.77 14.15 16 40 H 0.11 3.87 8.10 -2.39 -0.02 3.85 16 41 H 0.07 2.97 6.96 -2.39 -0.02 2.95 16 42 H 0.11 3.29 8.14 -2.39 -0.02 3.27 16 43 H 0.11 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.06 2.36 7.98 -2.39 -0.02 2.35 16 45 H 0.08 1.96 7.16 -2.39 -0.02 1.94 16 46 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -72.85 371.92 4.29 -68.56 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: 0.97 Total: 18.52 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.81 Total: 3.81 kcal Atomic # 7 Polarization: -106.29 SS G_CDS: -4.47 Total: -110.76 kcal Atomic # 8 Polarization: -32.16 SS G_CDS: -0.05 Total: -32.22 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 2.03 Total: 52.09 kcal Total: -72.85 4.29 -68.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076919337.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.108 kcal (2) G-P(sol) polarization free energy of solvation -72.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds