Wall clock time and date at job start Tue Mar 31 2020 10:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38243 * 119.88874 * 2 1 4 4 C 1.37990 * 120.22544 * 179.74305 * 3 2 1 5 5 C 1.39621 * 120.00346 * 0.23748 * 4 3 2 6 6 C 1.47839 * 120.11002 * 180.02562 * 5 4 3 7 7 N 1.31210 * 125.72678 * 179.69311 * 6 5 4 8 8 C 1.34155 * 108.64800 * 179.87500 * 7 6 5 9 9 C 1.34549 * 107.83775 * 0.39054 * 8 7 6 10 10 O 1.34431 * 125.72363 * 0.02562 * 6 5 4 11 11 C 1.39436 * 119.78590 * 0.02562 * 5 4 3 12 12 C 1.38680 * 119.77354 * 0.02562 * 11 5 4 13 13 N 1.39698 * 120.00232 * 180.02562 * 12 11 5 14 14 C 1.46499 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47591 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.46707 * 300.00057 * 15 14 13 17 17 C 1.52998 * 109.46682 * 59.99699 * 15 14 13 18 18 C 1.53000 * 109.47382 * 179.97438 * 15 14 13 19 19 C 1.50690 * 109.46918 * 179.97438 * 18 15 14 20 20 H 1.08000 * 120.00485 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99645 * 180.02562 * 19 18 15 22 22 N 1.31513 * 119.99696 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99965 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47150 * 90.00625 * 23 21 19 25 25 H 1.48501 * 109.47016 * 210.00127 * 23 21 19 26 26 H 1.48501 * 109.47236 * 330.00036 * 23 21 19 27 27 H 1.08998 * 109.47059 * 90.00120 * 1 2 3 28 28 H 1.09002 * 109.46617 * 209.99525 * 1 2 3 29 29 H 1.08996 * 109.47170 * 329.99407 * 1 2 3 30 30 H 1.08002 * 119.89005 * 0.02930 * 3 2 1 31 31 H 1.07996 * 119.99717 * 180.26008 * 4 3 2 32 32 H 1.08002 * 126.08457 * 180.11464 * 8 7 6 33 33 H 1.08000 * 126.36686 * 179.76734 * 9 8 7 34 34 H 1.07997 * 120.11718 * 180.02562 * 11 5 4 35 35 H 0.96998 * 120.00080 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47096 * 300.00515 * 14 13 12 37 37 H 1.09006 * 109.46896 * 60.00062 * 14 13 12 38 38 H 1.09001 * 109.46907 * 60.00179 * 16 15 14 39 39 H 1.08997 * 109.46752 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.47123 * 299.99742 * 16 15 14 41 41 H 1.08996 * 109.47052 * 60.00635 * 17 15 14 42 42 H 1.09010 * 109.46696 * 179.97438 * 17 15 14 43 43 H 1.08991 * 109.47424 * 300.00140 * 17 15 14 44 44 H 1.08998 * 109.46717 * 300.00421 * 18 15 14 45 45 H 1.09003 * 109.46497 * 60.00114 * 18 15 14 46 46 H 0.97004 * 119.99825 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5757 1.2067 0.0053 5 6 4.2810 0.0017 0.0058 6 6 5.7594 0.0076 0.0121 7 7 6.5298 -1.0544 0.0188 8 6 7.8106 -0.6553 0.0202 9 6 7.8230 0.6901 0.0229 10 8 6.5399 1.1022 0.0182 11 6 3.5865 -1.2074 0.0002 12 6 2.1997 -1.2050 -0.0062 13 7 1.4991 -2.4135 -0.0112 14 6 2.2292 -3.6836 -0.0103 15 6 1.2330 -4.8448 -0.0171 16 6 0.3477 -4.7645 1.2283 17 6 0.3593 -4.7596 -1.2702 18 6 1.9956 -6.1712 -0.0167 19 6 1.0142 -7.3147 -0.0228 20 1 -0.0472 -7.1155 -0.0270 21 6 1.4715 -8.6155 -0.0231 22 7 0.6151 -9.6136 -0.0289 23 14 3.3074 -8.9601 -0.0152 24 1 3.7874 -9.0542 1.3870 25 1 3.5735 -10.2418 -0.7164 26 1 4.0209 -7.8585 -0.7098 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6523 2.1318 0.0005 31 1 4.1101 2.1451 0.0096 32 1 8.6776 -1.2993 0.0235 33 1 8.6985 1.3224 0.0281 34 1 4.1266 -2.1426 0.0010 35 1 0.5291 -2.4118 -0.0161 36 1 2.8596 -3.7409 -0.8976 37 1 2.8520 -3.7440 0.8823 38 1 -0.1956 -3.8195 1.2275 39 1 -0.3623 -5.5914 1.2232 40 1 0.9701 -4.8250 2.1210 41 1 0.9900 -4.8169 -2.1574 42 1 -0.3502 -5.5872 -1.2753 43 1 -0.1840 -3.8148 -1.2709 44 1 2.6260 -6.2280 -0.9041 45 1 2.6183 -6.2319 0.8759 46 1 0.9368 -10.5287 -0.0295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092174649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:52 Heat of formation + Delta-G solvation = 36.042827 kcal Electronic energy + Delta-G solvation = -25641.127294 eV Core-core repulsion = 22110.800649 eV Total energy + Delta-G solvation = -3530.326645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.39268 -39.79484 -37.61418 -34.94949 -34.59479 -33.19181 -32.20002 -30.12703 -29.39377 -27.67617 -26.85320 -26.54481 -25.97885 -23.15371 -22.86966 -22.38826 -21.14477 -20.74297 -18.46246 -17.90804 -16.94948 -16.73576 -16.55748 -16.01109 -15.36379 -14.90941 -14.60917 -14.50879 -14.21070 -13.81885 -13.63516 -13.53177 -13.31107 -13.25410 -12.76376 -12.72942 -12.39662 -12.27022 -12.22507 -11.52479 -11.48021 -11.29292 -11.19977 -11.14545 -10.99515 -10.67147 -10.62983 -10.45208 -10.22279 -9.88255 -9.74519 -9.51622 -9.49376 -8.99294 -8.53466 -8.35869 -7.26500 -6.04176 -4.01376 0.58167 1.54522 1.74819 2.49022 2.68276 3.31609 3.39627 3.43590 3.62810 3.83334 3.86303 4.45738 4.68832 4.80154 4.85152 4.91249 5.10116 5.26143 5.28433 5.33518 5.43183 5.50924 5.51742 5.54510 5.59275 5.64943 5.69527 5.85049 5.96523 6.07228 6.08577 6.10893 6.14338 6.26163 6.32187 6.43894 6.46413 6.57007 6.60401 6.75544 6.88973 7.01970 7.05374 7.19890 7.36799 7.42793 7.57313 7.78648 7.88365 8.53132 9.00066 9.58565 11.08630 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.003474 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.303956 B = 8057.958067 C =10064.583900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.149 4.149 3 C -0.075 4.075 4 C -0.153 4.153 5 C 0.017 3.983 6 C 0.242 3.758 7 N -0.473 5.473 8 C -0.038 4.038 9 C -0.083 4.083 10 O -0.198 6.198 11 C -0.147 4.147 12 C 0.225 3.775 13 N -0.733 5.733 14 C 0.126 3.874 15 C -0.060 4.060 16 C -0.128 4.128 17 C -0.128 4.128 18 C -0.002 4.002 19 C -0.511 4.511 20 H 0.078 0.922 21 C 0.067 3.933 22 N -0.904 5.904 23 Si 0.874 3.126 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.265 1.265 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.185 0.815 33 H 0.216 0.784 34 H 0.138 0.862 35 H 0.402 0.598 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.071 0.929 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.071 0.929 43 H 0.031 0.969 44 H 0.018 0.982 45 H 0.013 0.987 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.362 24.121 0.029 25.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.154 4.154 3 C -0.093 4.093 4 C -0.175 4.175 5 C 0.015 3.985 6 C 0.039 3.961 7 N -0.201 5.201 8 C -0.178 4.178 9 C -0.153 4.153 10 O -0.084 6.084 11 C -0.171 4.171 12 C 0.118 3.882 13 N -0.362 5.362 14 C 0.002 3.998 15 C -0.061 4.061 16 C -0.185 4.185 17 C -0.185 4.185 18 C -0.040 4.040 19 C -0.549 4.549 20 H 0.096 0.904 21 C -0.134 4.134 22 N -0.543 5.543 23 Si 0.702 3.298 24 H -0.204 1.204 25 H -0.215 1.215 26 H -0.190 1.190 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.144 0.856 31 H 0.141 0.859 32 H 0.202 0.798 33 H 0.233 0.767 34 H 0.156 0.844 35 H 0.240 0.760 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.049 0.951 39 H 0.090 0.910 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.090 0.910 43 H 0.050 0.950 44 H 0.036 0.964 45 H 0.031 0.969 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.226 23.127 0.032 24.229 hybrid contribution 1.348 0.270 0.030 1.375 sum 8.574 23.397 0.063 24.919 Atomic orbital electron populations 1.20641 0.91157 1.02556 1.02149 1.19543 0.96010 0.91674 1.08211 1.20594 0.93215 0.96931 0.98602 1.20811 0.94224 0.96351 1.06143 1.16924 0.83109 0.94436 1.04048 1.24039 0.93428 0.78452 1.00200 1.70717 1.01854 1.29591 1.17973 1.23426 0.95325 0.93764 1.05240 1.25107 0.84812 0.96913 1.08495 1.84504 1.16998 1.37265 1.69681 1.20592 0.92026 0.97659 1.06845 1.17497 0.90663 0.86331 0.93674 1.45070 1.08541 1.02433 1.80162 1.21679 0.95092 0.82254 1.00765 1.20640 0.95134 0.94586 0.95721 1.21762 0.99735 1.00175 0.96831 1.21757 0.99788 1.00183 0.96764 1.19591 0.96026 0.91891 0.96457 1.21080 0.94386 0.89012 1.50384 0.90424 1.25000 0.97330 0.96370 0.94731 1.69904 1.34047 0.99014 1.51362 0.86861 0.86630 0.77793 0.78507 1.20371 1.21507 1.18974 0.91340 0.91927 0.91407 0.85637 0.85943 0.79755 0.76738 0.84384 0.76037 0.92371 0.92392 0.95051 0.90974 0.93441 0.93444 0.90977 0.95009 0.96396 0.96855 0.92802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.98 9.55 36.00 0.34 -0.64 16 2 C -0.15 -1.70 5.90 -104.34 -0.62 -2.31 16 3 C -0.07 -0.77 9.67 -39.67 -0.38 -1.16 16 4 C -0.15 -1.75 9.71 -39.16 -0.38 -2.13 16 5 C 0.02 0.23 5.87 -105.01 -0.62 -0.39 16 6 C 0.24 3.35 7.90 -13.89 -0.11 3.24 16 7 N -0.47 -6.87 10.91 -11.72 -0.13 -7.00 16 8 C -0.04 -0.41 11.87 -17.84 -0.21 -0.62 16 9 C -0.08 -0.74 12.17 29.43 0.36 -0.39 16 10 O -0.20 -2.35 10.52 4.07 0.04 -2.31 16 11 C -0.15 -2.11 8.95 -38.97 -0.35 -2.46 16 12 C 0.22 3.01 6.63 -83.83 -0.56 2.46 16 13 N -0.73 -10.03 5.03 -58.66 -0.30 -10.33 16 14 C 0.13 2.01 3.80 -4.04 -0.02 1.99 16 15 C -0.06 -1.10 0.54 -154.50 -0.08 -1.18 16 16 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 17 C -0.13 -2.23 8.05 37.16 0.30 -1.93 16 18 C 0.00 -0.04 3.11 -27.89 -0.09 -0.13 16 19 C -0.51 -13.67 8.20 -34.44 -0.28 -13.95 16 20 H 0.08 2.20 5.92 -52.49 -0.31 1.89 16 21 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 22 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 23 Si 0.87 21.53 27.47 -169.99 -4.67 16.87 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.58 6.55 -51.93 -0.34 0.24 16 29 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 30 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 31 H 0.12 1.19 7.90 -52.49 -0.41 0.78 16 32 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.22 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.14 2.14 6.50 -52.49 -0.34 1.79 16 35 H 0.40 5.09 4.15 -40.82 -0.17 4.92 16 36 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 37 H 0.06 0.95 7.95 -51.93 -0.41 0.53 16 38 H 0.03 0.45 6.86 -51.93 -0.36 0.10 16 39 H 0.07 1.42 6.62 -51.93 -0.34 1.07 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.42 6.62 -51.92 -0.34 1.07 16 43 H 0.03 0.46 6.86 -51.93 -0.36 0.11 16 44 H 0.02 0.41 7.20 -51.93 -0.37 0.04 16 45 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -31.41 367.71 -7.91 -39.33 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -6.69 Total: 4.17 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: -2.49 Total: -19.74 kcal Atomic # 7 Polarization: -44.20 SS G_CDS: 0.35 Total: -43.85 kcal Atomic # 8 Polarization: -2.35 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.41 -7.91 -39.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092174649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.369 kcal (2) G-P(sol) polarization free energy of solvation -31.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds