Wall clock time and date at job start Tue Mar 31 2020 10:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38243 * 119.88874 * 2 1 4 4 C 1.37990 * 120.22544 * 179.74305 * 3 2 1 5 5 C 1.39621 * 120.00346 * 0.23748 * 4 3 2 6 6 C 1.47839 * 120.11002 * 180.02562 * 5 4 3 7 7 N 1.31210 * 125.72678 * 179.69311 * 6 5 4 8 8 C 1.34155 * 108.64800 * 179.87500 * 7 6 5 9 9 C 1.34549 * 107.83775 * 0.39054 * 8 7 6 10 10 O 1.34431 * 125.72363 * 0.02562 * 6 5 4 11 11 C 1.39436 * 119.78590 * 0.02562 * 5 4 3 12 12 C 1.38680 * 119.77354 * 0.02562 * 11 5 4 13 13 N 1.39698 * 120.00232 * 180.02562 * 12 11 5 14 14 C 1.46499 * 120.00316 * 359.97438 * 13 12 11 15 15 C 1.53002 * 109.47591 * 180.02562 * 14 13 12 16 16 C 1.53007 * 109.46707 * 300.00057 * 15 14 13 17 17 C 1.52998 * 109.46682 * 59.99699 * 15 14 13 18 18 C 1.53000 * 109.47382 * 179.97438 * 15 14 13 19 19 C 1.50690 * 109.46918 * 179.97438 * 18 15 14 20 20 H 1.08000 * 120.00485 * 0.02562 * 19 18 15 21 21 C 1.37884 * 119.99645 * 180.02562 * 19 18 15 22 22 N 1.31513 * 119.99696 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 119.99965 * 0.02562 * 21 19 18 24 24 H 1.48499 * 109.47150 * 90.00625 * 23 21 19 25 25 H 1.48501 * 109.47016 * 210.00127 * 23 21 19 26 26 H 1.48501 * 109.47236 * 330.00036 * 23 21 19 27 27 H 1.08998 * 109.47059 * 90.00120 * 1 2 3 28 28 H 1.09002 * 109.46617 * 209.99525 * 1 2 3 29 29 H 1.08996 * 109.47170 * 329.99407 * 1 2 3 30 30 H 1.08002 * 119.89005 * 0.02930 * 3 2 1 31 31 H 1.07996 * 119.99717 * 180.26008 * 4 3 2 32 32 H 1.08002 * 126.08457 * 180.11464 * 8 7 6 33 33 H 1.08000 * 126.36686 * 179.76734 * 9 8 7 34 34 H 1.07997 * 120.11718 * 180.02562 * 11 5 4 35 35 H 0.96998 * 120.00080 * 180.02562 * 13 12 11 36 36 H 1.09001 * 109.47096 * 300.00515 * 14 13 12 37 37 H 1.09006 * 109.46896 * 60.00062 * 14 13 12 38 38 H 1.09001 * 109.46907 * 60.00179 * 16 15 14 39 39 H 1.08997 * 109.46752 * 179.97438 * 16 15 14 40 40 H 1.08998 * 109.47123 * 299.99742 * 16 15 14 41 41 H 1.08996 * 109.47052 * 60.00635 * 17 15 14 42 42 H 1.09010 * 109.46696 * 179.97438 * 17 15 14 43 43 H 1.08991 * 109.47424 * 300.00140 * 17 15 14 44 44 H 1.08998 * 109.46717 * 300.00421 * 18 15 14 45 45 H 1.09003 * 109.46497 * 60.00114 * 18 15 14 46 46 H 0.97004 * 119.99825 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1959 1.1986 0.0000 4 6 3.5757 1.2067 0.0053 5 6 4.2810 0.0017 0.0058 6 6 5.7594 0.0076 0.0121 7 7 6.5298 -1.0544 0.0188 8 6 7.8106 -0.6553 0.0202 9 6 7.8230 0.6901 0.0229 10 8 6.5399 1.1022 0.0182 11 6 3.5865 -1.2074 0.0002 12 6 2.1997 -1.2050 -0.0062 13 7 1.4991 -2.4135 -0.0112 14 6 2.2292 -3.6836 -0.0103 15 6 1.2330 -4.8448 -0.0171 16 6 0.3477 -4.7645 1.2283 17 6 0.3593 -4.7596 -1.2702 18 6 1.9956 -6.1712 -0.0167 19 6 1.0142 -7.3147 -0.0228 20 1 -0.0472 -7.1155 -0.0270 21 6 1.4715 -8.6155 -0.0231 22 7 0.6151 -9.6136 -0.0289 23 14 3.3074 -8.9601 -0.0152 24 1 3.7874 -9.0542 1.3870 25 1 3.5735 -10.2418 -0.7164 26 1 4.0209 -7.8585 -0.7098 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3632 -0.8901 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6523 2.1318 0.0005 31 1 4.1101 2.1451 0.0096 32 1 8.6776 -1.2993 0.0235 33 1 8.6985 1.3224 0.0281 34 1 4.1266 -2.1426 0.0010 35 1 0.5291 -2.4118 -0.0161 36 1 2.8596 -3.7409 -0.8976 37 1 2.8520 -3.7440 0.8823 38 1 -0.1956 -3.8195 1.2275 39 1 -0.3623 -5.5914 1.2232 40 1 0.9701 -4.8250 2.1210 41 1 0.9900 -4.8169 -2.1574 42 1 -0.3502 -5.5872 -1.2753 43 1 -0.1840 -3.8148 -1.2709 44 1 2.6260 -6.2280 -0.9041 45 1 2.6183 -6.2319 0.8759 46 1 0.9368 -10.5287 -0.0295 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092174649.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:51 Heat of formation + Delta-G solvation = 16.396116 kcal Electronic energy + Delta-G solvation = -25641.979240 eV Core-core repulsion = 22110.800649 eV Total energy + Delta-G solvation = -3531.178591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.24483 -40.77857 -38.98512 -35.91042 -35.75981 -34.45642 -33.85148 -30.92499 -30.63222 -29.34829 -28.00478 -27.72598 -27.24123 -24.60083 -23.69827 -23.59488 -22.22735 -21.68088 -19.70935 -19.06211 -18.90627 -17.61693 -17.59057 -17.00280 -16.36974 -16.16343 -15.87487 -15.72128 -15.59956 -14.93492 -14.85880 -14.74573 -14.45056 -14.17872 -14.11297 -14.05405 -14.00462 -13.20601 -13.13757 -12.96074 -12.84100 -12.68440 -12.39979 -12.34488 -12.30869 -12.17163 -12.02493 -11.76451 -11.59382 -11.57317 -11.17111 -11.09979 -10.90819 -10.71705 -10.33947 -9.23937 -8.26847 -8.23722 -6.23768 -0.30943 0.64065 0.91865 1.34502 1.37080 1.47331 1.67661 1.79413 2.37807 2.54570 2.91546 3.06377 3.11738 3.88576 3.93709 4.02589 4.05620 4.06115 4.16127 4.17454 4.29659 4.45223 4.57768 4.65880 4.68149 4.71724 4.77374 4.83042 4.88222 4.89926 4.94682 4.98565 5.03868 5.07551 5.23448 5.28198 5.29376 5.34351 5.38183 5.38986 5.52463 5.55146 5.59833 5.67928 5.75056 5.88742 6.32039 6.40436 6.71756 6.83021 6.88153 7.38962 8.92085 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012676 B = 0.003474 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.303956 B = 8057.958067 C =10064.583900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.145 4.145 3 C -0.069 4.069 4 C -0.148 4.148 5 C 0.001 3.999 6 C 0.217 3.783 7 N -0.510 5.510 8 C -0.067 4.067 9 C -0.058 4.058 10 O -0.203 6.203 11 C -0.168 4.168 12 C 0.209 3.791 13 N -0.731 5.731 14 C 0.143 3.857 15 C -0.056 4.056 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.002 4.002 19 C -0.502 4.502 20 H 0.051 0.949 21 C 0.006 3.994 22 N -0.951 5.951 23 Si 0.934 3.066 24 H -0.271 1.271 25 H -0.288 1.288 26 H -0.252 1.252 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.089 0.911 30 H 0.161 0.839 31 H 0.140 0.860 32 H 0.208 0.792 33 H 0.266 0.734 34 H 0.116 0.884 35 H 0.407 0.593 36 H 0.050 0.950 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.064 0.936 44 H 0.014 0.986 45 H 0.012 0.988 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 27.760 0.060 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.150 4.150 3 C -0.088 4.088 4 C -0.170 4.170 5 C -0.001 4.001 6 C 0.014 3.986 7 N -0.240 5.240 8 C -0.206 4.206 9 C -0.128 4.128 10 O -0.089 6.089 11 C -0.192 4.192 12 C 0.104 3.896 13 N -0.362 5.362 14 C 0.018 3.982 15 C -0.057 4.057 16 C -0.179 4.179 17 C -0.178 4.178 18 C -0.040 4.040 19 C -0.541 4.541 20 H 0.069 0.931 21 C -0.190 4.190 22 N -0.593 5.593 23 Si 0.759 3.241 24 H -0.197 1.197 25 H -0.214 1.214 26 H -0.176 1.176 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.178 0.822 31 H 0.158 0.842 32 H 0.225 0.775 33 H 0.282 0.718 34 H 0.134 0.866 35 H 0.246 0.754 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.335 26.813 0.064 28.078 hybrid contribution 1.041 -0.731 0.021 1.272 sum 9.375 26.082 0.085 27.716 Atomic orbital electron populations 1.20718 0.89260 1.03540 1.03007 1.19877 0.97409 0.91083 1.06679 1.21000 0.92885 0.97948 0.96945 1.21097 0.94890 0.96193 1.04810 1.17113 0.83398 0.94928 1.04644 1.24105 0.93791 0.78875 1.01852 1.70667 1.03756 1.30864 1.18710 1.23950 0.94838 0.95300 1.06500 1.26079 0.84851 0.96991 1.04838 1.84504 1.18023 1.36831 1.69549 1.20502 0.92635 0.97327 1.08780 1.17621 0.90396 0.86810 0.94756 1.44786 1.08517 1.01710 1.81219 1.21268 0.94166 0.82564 1.00171 1.20510 0.95384 0.93289 0.96500 1.21673 0.99128 1.00779 0.96280 1.21668 0.99183 1.00782 0.96211 1.19553 0.95427 0.92988 0.96030 1.21374 0.94113 0.90267 1.48303 0.93110 1.25832 1.01728 0.96434 0.95033 1.70044 1.36155 0.99454 1.53671 0.85897 0.81465 0.77872 0.78856 1.19680 1.21366 1.17609 0.90432 0.92154 0.89263 0.82160 0.84211 0.77488 0.71834 0.86645 0.75360 0.93146 0.93101 0.91728 0.93792 0.93728 0.93768 0.93790 0.91692 0.96764 0.96927 0.92841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 9.55 71.24 0.68 -0.91 16 2 C -0.15 -2.93 5.90 -19.68 -0.12 -3.04 16 3 C -0.07 -1.21 9.67 22.21 0.21 -0.99 16 4 C -0.15 -3.06 9.71 22.54 0.22 -2.84 16 5 C 0.00 0.03 5.87 -20.11 -0.12 -0.09 16 6 C 0.22 5.94 7.90 87.33 0.69 6.63 16 7 N -0.51 -14.98 10.91 -305.07 -3.33 -18.31 16 8 C -0.07 -1.37 11.87 83.49 0.99 -0.38 16 9 C -0.06 -0.89 12.17 66.97 0.82 -0.08 16 10 O -0.20 -4.50 10.52 -8.34 -0.09 -4.58 16 11 C -0.17 -4.87 8.95 22.66 0.20 -4.67 16 12 C 0.21 5.38 6.63 38.17 0.25 5.63 16 13 N -0.73 -19.16 5.03 -339.51 -1.71 -20.87 16 14 C 0.14 4.54 3.80 86.38 0.33 4.87 16 15 C -0.06 -2.05 0.54 -52.18 -0.03 -2.08 16 16 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 17 C -0.12 -4.21 8.05 71.98 0.58 -3.63 16 18 C 0.00 -0.10 3.11 29.85 0.09 0.00 16 19 C -0.50 -27.73 8.20 25.60 0.21 -27.52 16 20 H 0.05 3.02 5.92 -2.91 -0.02 3.01 16 21 C 0.01 0.34 5.47 84.66 0.46 0.81 16 22 N -0.95 -59.34 13.96 21.45 0.30 -59.04 16 23 Si 0.93 45.02 27.47 68.60 1.88 46.91 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.25 -11.52 6.54 99.48 0.65 -10.86 16 27 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 0.93 6.55 -2.39 -0.02 0.91 16 29 H 0.09 0.94 8.08 -2.39 -0.02 0.92 16 30 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 31 H 0.14 2.33 7.90 -2.91 -0.02 2.31 16 32 H 0.21 2.89 8.06 -2.91 -0.02 2.87 16 33 H 0.27 1.00 8.06 -2.91 -0.02 0.97 16 34 H 0.12 3.78 6.50 -2.91 -0.02 3.76 16 35 H 0.41 9.46 4.15 -92.71 -0.38 9.08 16 36 H 0.05 1.67 7.95 -2.39 -0.02 1.65 16 37 H 0.05 1.68 7.95 -2.38 -0.02 1.66 16 38 H 0.06 1.79 6.86 -2.39 -0.02 1.77 16 39 H 0.04 1.76 6.62 -2.39 -0.02 1.75 16 40 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.04 1.76 6.62 -2.38 -0.02 1.75 16 43 H 0.06 1.80 6.86 -2.39 -0.02 1.78 16 44 H 0.01 0.66 7.20 -2.39 -0.02 0.64 16 45 H 0.01 0.57 7.57 -2.39 -0.02 0.55 16 46 H 0.26 15.47 8.31 -92.70 -0.77 14.69 16 Total: -1.00 -71.61 367.71 3.67 -67.94 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.55 Total: 19.87 kcal Atomic # 6 Polarization: -37.98 SS G_CDS: 6.06 Total: -31.92 kcal Atomic # 7 Polarization: -93.48 SS G_CDS: -4.74 Total: -98.22 kcal Atomic # 8 Polarization: -4.50 SS G_CDS: -0.09 Total: -4.58 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 1.88 Total: 46.91 kcal Total: -71.61 3.67 -67.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092174649.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.337 kcal (2) G-P(sol) polarization free energy of solvation -71.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds