Wall clock time and date at job start Tue Mar 31 2020 11:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47019 * 2 1 4 4 O 1.34455 * 124.92400 * 269.97235 * 3 2 1 5 5 C 1.34805 * 110.88876 * 180.02562 * 4 3 2 6 6 C 1.38943 * 133.49375 * 179.97438 * 5 4 3 7 7 C 1.37848 * 119.81687 * 179.72640 * 6 5 4 8 8 C 1.38743 * 120.68541 * 0.27066 * 7 6 5 9 9 C 1.36732 * 120.41601 * 0.02978 * 8 7 6 10 10 C 1.39409 * 119.71970 * 359.97438 * 9 8 7 11 11 C 1.34002 * 124.92418 * 90.71555 * 3 2 1 12 12 C 1.50704 * 126.90612 * 359.31435 * 11 3 2 13 13 N 1.46897 * 109.46977 * 270.87650 * 12 11 3 14 14 C 1.46899 * 111.00036 * 294.29825 * 13 12 11 15 15 C 1.53243 * 109.34229 * 172.75069 * 14 13 12 16 16 N 1.47079 * 108.52313 * 53.82708 * 15 14 13 17 17 C 1.36933 * 120.88034 * 128.79131 * 16 15 14 18 18 H 1.07998 * 120.00195 * 206.59668 * 17 16 15 19 19 C 1.38808 * 119.99989 * 26.60897 * 17 16 15 20 20 N 1.31622 * 119.99926 * 16.99422 * 19 17 16 21 21 Si 1.86797 * 120.00162 * 196.99564 * 19 17 16 22 22 H 1.48498 * 109.47139 * 59.99829 * 21 19 17 23 23 H 1.48505 * 109.47421 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47219 * 299.99902 * 21 19 17 25 25 C 1.47081 * 118.23742 * 308.81861 * 16 15 14 26 26 C 1.46901 * 110.99922 * 169.99887 * 13 12 11 27 27 H 1.08996 * 109.46944 * 299.99966 * 1 2 3 28 28 H 1.09000 * 109.46993 * 60.00079 * 1 2 3 29 29 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47353 * 239.99894 * 2 1 3 31 31 H 1.09000 * 109.46993 * 119.99921 * 2 1 3 32 32 H 1.08005 * 120.09230 * 359.97438 * 6 5 4 33 33 H 1.08005 * 119.65446 * 180.25926 * 7 6 5 34 34 H 1.08002 * 119.78593 * 180.02562 * 8 7 6 35 35 H 1.08001 * 120.13686 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.46916 * 30.87302 * 12 11 3 37 37 H 1.08994 * 109.47202 * 150.87493 * 12 11 3 38 38 H 1.09000 * 109.49469 * 292.70943 * 14 13 12 39 39 H 1.08995 * 109.49114 * 52.78639 * 14 13 12 40 40 H 1.09001 * 109.62375 * 294.12089 * 15 14 13 41 41 H 1.08993 * 109.63158 * 173.53975 * 15 14 13 42 42 H 0.97010 * 120.00135 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.63139 * 291.47492 * 25 16 15 44 44 H 1.08997 * 109.78723 * 170.98605 * 25 16 15 45 45 H 1.09005 * 109.49128 * 307.21032 * 26 13 12 46 46 H 1.08998 * 109.49811 * 67.29372 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2894 2.1463 -1.1024 5 6 2.7257 3.3792 -0.7755 6 6 3.1174 4.4840 -1.5214 7 6 3.5189 5.6365 -0.8804 8 6 3.5420 5.7047 0.5051 9 6 3.1663 4.6266 1.2576 10 6 2.7572 3.4525 0.6271 11 6 2.3010 2.1395 1.0986 12 6 2.1476 1.6953 2.5305 13 7 0.7898 2.0065 2.9969 14 6 0.5706 3.4581 3.0484 15 6 -0.9029 3.7381 3.3624 16 7 -1.2659 3.0104 4.5880 17 6 -1.8802 3.6518 5.6303 18 1 -1.7644 3.2791 6.6373 19 6 -2.6518 4.7809 5.3926 20 7 -3.0719 5.0462 4.1737 21 14 -3.0940 5.9238 6.8024 22 1 -1.8512 6.4606 7.4128 23 1 -3.9180 7.0475 6.2889 24 1 -3.8637 5.1724 7.8261 25 6 -0.9512 1.5758 4.6645 26 6 0.5243 1.3810 4.2993 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.1035 4.4414 -2.6006 33 1 3.8189 6.4951 -1.4629 34 1 3.8587 6.6150 0.9923 35 1 3.1863 4.6845 2.3359 36 1 2.3175 0.6207 2.5978 37 1 2.8742 2.2177 3.1528 38 1 1.1974 3.8932 3.8269 39 1 0.8275 3.8991 2.0854 40 1 -1.5249 3.3956 2.5354 41 1 -1.0480 4.8075 3.5150 42 1 -3.6109 5.8355 4.0075 43 1 -1.5778 1.0254 3.9627 44 1 -1.1289 1.2125 5.6767 45 1 0.7476 0.3155 4.2434 46 1 1.1517 1.8450 5.0604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092936257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:42 Heat of formation + Delta-G solvation = 56.674732 kcal Electronic energy + Delta-G solvation = -26978.970446 eV Core-core repulsion = 23449.538467 eV Total energy + Delta-G solvation = -3529.431979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.42465 -38.10494 -37.85831 -35.11330 -33.76257 -32.36451 -31.05933 -30.38395 -29.85726 -28.85750 -27.06576 -24.72004 -23.99935 -22.85452 -22.41718 -22.35024 -21.21753 -19.65846 -18.99319 -17.06121 -16.80268 -16.68825 -16.15611 -15.46775 -15.04549 -14.62704 -14.40950 -14.13792 -13.99174 -13.87493 -13.70146 -13.39006 -13.31149 -13.00974 -12.82579 -12.45980 -12.20493 -12.01738 -11.80782 -11.71170 -11.39129 -11.26833 -11.02519 -10.98712 -10.74150 -10.70863 -10.45178 -10.27350 -10.02626 -9.85652 -9.62275 -9.58364 -8.55114 -8.47272 -7.96728 -7.75007 -6.62769 -5.74642 -3.15827 0.98139 1.42171 2.39243 2.77347 3.39795 3.45671 3.46617 3.76681 4.41950 4.50489 4.56133 4.73199 4.92980 4.97731 5.07154 5.14815 5.28044 5.31175 5.42135 5.45312 5.49153 5.54348 5.59780 5.65689 5.77086 5.90345 5.93107 5.96330 6.04188 6.07118 6.18160 6.29767 6.33123 6.33576 6.38175 6.47291 6.50522 6.54978 6.60051 6.74985 6.76584 6.95739 7.29062 7.30112 7.63860 7.70587 7.75342 7.86007 8.46905 9.24633 9.88391 10.47036 11.33959 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.004322 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.593723 B = 6476.382478 C = 7654.914510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.040 4.040 3 C 0.049 3.951 4 O -0.195 6.195 5 C 0.049 3.951 6 C -0.109 4.109 7 C -0.099 4.099 8 C -0.137 4.137 9 C -0.068 4.068 10 C -0.113 4.113 11 C -0.159 4.159 12 C 0.125 3.875 13 N -0.524 5.524 14 C 0.037 3.963 15 C 0.181 3.819 16 N -0.595 5.595 17 C -0.253 4.253 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.901 3.099 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.150 3.850 26 C 0.044 3.956 27 H 0.082 0.918 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.127 0.873 35 H 0.124 0.876 36 H 0.077 0.923 37 H 0.035 0.965 38 H 0.021 0.979 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.086 0.914 42 H 0.254 0.746 43 H 0.024 0.976 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.162 -5.916 -9.951 18.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.077 4.077 3 C 0.001 3.999 4 O -0.097 6.097 5 C 0.001 3.999 6 C -0.127 4.127 7 C -0.117 4.117 8 C -0.155 4.155 9 C -0.086 4.086 10 C -0.114 4.114 11 C -0.161 4.161 12 C -0.003 4.003 13 N -0.249 5.249 14 C -0.092 4.092 15 C 0.055 3.945 16 N -0.318 5.318 17 C -0.382 4.382 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.547 5.547 21 Si 0.731 3.269 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.209 1.209 25 C 0.023 3.977 26 C -0.086 4.086 27 H 0.101 0.899 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.094 0.906 31 H 0.112 0.888 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.145 0.855 35 H 0.142 0.858 36 H 0.095 0.905 37 H 0.053 0.947 38 H 0.039 0.961 39 H 0.082 0.918 40 H 0.042 0.958 41 H 0.104 0.896 42 H 0.064 0.936 43 H 0.042 0.958 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 13.660 -6.058 -10.579 18.309 hybrid contribution 0.323 1.168 1.309 1.784 sum 13.983 -4.891 -9.270 17.475 Atomic orbital electron populations 1.21806 0.92948 1.02188 1.03978 1.20154 0.97328 0.86787 1.03465 1.22115 0.99829 0.94897 0.83039 1.83923 1.69806 1.21802 1.34126 1.19551 1.01180 0.85616 0.93514 1.19875 1.03330 0.90052 0.99467 1.20861 0.99601 0.96641 0.94626 1.20746 1.02185 0.98713 0.93846 1.20328 0.97012 0.91138 1.00083 1.19814 1.03689 0.95052 0.92885 1.20673 1.07069 0.92521 0.95791 1.20343 0.91022 0.99691 0.89215 1.62026 1.22734 1.12547 1.27630 1.22937 1.01191 0.86106 0.98998 1.20829 0.87714 0.98331 0.87666 1.44108 1.68627 1.02773 1.16292 1.19145 1.23376 1.08650 0.87041 0.91755 1.25007 0.97349 1.00920 0.96369 1.70030 1.37566 1.27672 1.19477 0.86388 0.77936 0.80684 0.81872 1.21156 1.21625 1.20906 1.20949 0.91225 0.87234 0.98251 1.22639 0.99826 0.97261 0.88841 0.89935 0.92755 0.92017 0.90596 0.88823 0.85412 0.85081 0.85540 0.85815 0.90476 0.94674 0.96095 0.91768 0.95814 0.89570 0.93607 0.95760 0.92724 0.92060 0.95497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.89 37.16 0.37 -1.45 16 2 C -0.04 -0.45 6.24 -27.88 -0.17 -0.62 16 3 C 0.05 0.71 6.49 -35.80 -0.23 0.47 16 4 O -0.19 -2.97 10.58 3.90 0.04 -2.93 16 5 C 0.05 0.73 7.42 -38.47 -0.29 0.44 16 6 C -0.11 -1.35 10.07 -39.46 -0.40 -1.75 16 7 C -0.10 -1.10 10.01 -39.54 -0.40 -1.50 16 8 C -0.14 -1.65 9.98 -39.94 -0.40 -2.05 16 9 C -0.07 -0.96 9.22 -39.69 -0.37 -1.32 16 10 C -0.11 -1.76 5.32 -105.16 -0.56 -2.32 16 11 C -0.16 -2.41 5.13 -102.66 -0.53 -2.94 16 12 C 0.12 1.85 5.26 -4.98 -0.03 1.83 16 13 N -0.52 -9.30 4.62 -235.76 -1.09 -10.39 16 14 C 0.04 0.75 5.45 -3.70 -0.02 0.73 16 15 C 0.18 4.49 5.42 -3.60 -0.02 4.47 16 16 N -0.59 -15.23 3.04 -172.01 -0.52 -15.75 16 17 C -0.25 -7.03 9.63 -15.06 -0.15 -7.17 16 18 H 0.06 1.75 7.88 -52.49 -0.41 1.33 16 19 C 0.00 0.06 4.94 -17.43 -0.09 -0.03 16 20 N -0.90 -26.65 11.15 55.49 0.62 -26.04 16 21 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.15 3.19 6.69 -3.60 -0.02 3.16 16 26 C 0.04 0.77 5.62 -3.70 -0.02 0.75 16 27 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.09 0.91 7.06 -51.93 -0.37 0.54 16 32 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 36 H 0.08 0.98 6.92 -51.93 -0.36 0.62 16 37 H 0.04 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.29 5.31 -51.93 -0.28 1.01 16 40 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 2.38 6.12 -51.93 -0.32 2.06 16 42 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.05 1.11 7.96 -51.93 -0.41 0.70 16 45 H 0.06 0.90 7.99 -51.93 -0.41 0.48 16 46 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 366.10 15.07 5.52 5.52 Total: -1.00 -31.27 366.10 -10.96 -42.23 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -7.19 Total: -0.23 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -3.31 Total: -9.30 kcal Atomic # 7 Polarization: -51.18 SS G_CDS: -0.99 Total: -52.17 kcal Atomic # 8 Polarization: -2.97 SS G_CDS: 0.04 Total: -2.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.27 -10.96 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.906 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds