Wall clock time and date at job start Tue Mar 31 2020 11:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47019 * 2 1 4 4 O 1.34455 * 124.92400 * 269.97235 * 3 2 1 5 5 C 1.34805 * 110.88876 * 180.02562 * 4 3 2 6 6 C 1.38943 * 133.49375 * 179.97438 * 5 4 3 7 7 C 1.37848 * 119.81687 * 179.72640 * 6 5 4 8 8 C 1.38743 * 120.68541 * 0.27066 * 7 6 5 9 9 C 1.36732 * 120.41601 * 0.02978 * 8 7 6 10 10 C 1.39409 * 119.71970 * 359.97438 * 9 8 7 11 11 C 1.34002 * 124.92418 * 90.71555 * 3 2 1 12 12 C 1.50704 * 126.90612 * 359.31435 * 11 3 2 13 13 N 1.46897 * 109.46977 * 270.87650 * 12 11 3 14 14 C 1.46899 * 111.00036 * 294.29825 * 13 12 11 15 15 C 1.53243 * 109.34229 * 172.75069 * 14 13 12 16 16 N 1.47079 * 108.52313 * 53.82708 * 15 14 13 17 17 C 1.36933 * 120.88034 * 128.79131 * 16 15 14 18 18 H 1.07998 * 120.00195 * 206.59668 * 17 16 15 19 19 C 1.38808 * 119.99989 * 26.60897 * 17 16 15 20 20 N 1.31622 * 119.99926 * 16.99422 * 19 17 16 21 21 Si 1.86797 * 120.00162 * 196.99564 * 19 17 16 22 22 H 1.48498 * 109.47139 * 59.99829 * 21 19 17 23 23 H 1.48505 * 109.47421 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47219 * 299.99902 * 21 19 17 25 25 C 1.47081 * 118.23742 * 308.81861 * 16 15 14 26 26 C 1.46901 * 110.99922 * 169.99887 * 13 12 11 27 27 H 1.08996 * 109.46944 * 299.99966 * 1 2 3 28 28 H 1.09000 * 109.46993 * 60.00079 * 1 2 3 29 29 H 1.09003 * 109.46936 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47353 * 239.99894 * 2 1 3 31 31 H 1.09000 * 109.46993 * 119.99921 * 2 1 3 32 32 H 1.08005 * 120.09230 * 359.97438 * 6 5 4 33 33 H 1.08005 * 119.65446 * 180.25926 * 7 6 5 34 34 H 1.08002 * 119.78593 * 180.02562 * 8 7 6 35 35 H 1.08001 * 120.13686 * 179.97438 * 9 8 7 36 36 H 1.09004 * 109.46916 * 30.87302 * 12 11 3 37 37 H 1.08994 * 109.47202 * 150.87493 * 12 11 3 38 38 H 1.09000 * 109.49469 * 292.70943 * 14 13 12 39 39 H 1.08995 * 109.49114 * 52.78639 * 14 13 12 40 40 H 1.09001 * 109.62375 * 294.12089 * 15 14 13 41 41 H 1.08993 * 109.63158 * 173.53975 * 15 14 13 42 42 H 0.97010 * 120.00135 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.63139 * 291.47492 * 25 16 15 44 44 H 1.08997 * 109.78723 * 170.98605 * 25 16 15 45 45 H 1.09005 * 109.49128 * 307.21032 * 26 13 12 46 46 H 1.08998 * 109.49811 * 67.29372 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2894 2.1463 -1.1024 5 6 2.7257 3.3792 -0.7755 6 6 3.1174 4.4840 -1.5214 7 6 3.5189 5.6365 -0.8804 8 6 3.5420 5.7047 0.5051 9 6 3.1663 4.6266 1.2576 10 6 2.7572 3.4525 0.6271 11 6 2.3010 2.1395 1.0986 12 6 2.1476 1.6953 2.5305 13 7 0.7898 2.0065 2.9969 14 6 0.5706 3.4581 3.0484 15 6 -0.9029 3.7381 3.3624 16 7 -1.2659 3.0104 4.5880 17 6 -1.8802 3.6518 5.6303 18 1 -1.7644 3.2791 6.6373 19 6 -2.6518 4.7809 5.3926 20 7 -3.0719 5.0462 4.1737 21 14 -3.0940 5.9238 6.8024 22 1 -1.8512 6.4606 7.4128 23 1 -3.9180 7.0475 6.2889 24 1 -3.8637 5.1724 7.8261 25 6 -0.9512 1.5758 4.6645 26 6 0.5243 1.3810 4.2993 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.1035 4.4414 -2.6006 33 1 3.8189 6.4951 -1.4629 34 1 3.8587 6.6150 0.9923 35 1 3.1863 4.6845 2.3359 36 1 2.3175 0.6207 2.5978 37 1 2.8742 2.2177 3.1528 38 1 1.1974 3.8932 3.8269 39 1 0.8275 3.8991 2.0854 40 1 -1.5249 3.3956 2.5354 41 1 -1.0480 4.8075 3.5150 42 1 -3.6109 5.8355 4.0075 43 1 -1.5778 1.0254 3.9627 44 1 -1.1289 1.2125 5.6767 45 1 0.7476 0.3155 4.2434 46 1 1.1517 1.8450 5.0604 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092936257.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:32:42 Heat of formation + Delta-G solvation = 39.106422 kcal Electronic energy + Delta-G solvation = -26979.732265 eV Core-core repulsion = 23449.538467 eV Total energy + Delta-G solvation = -3530.193798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.47944 -39.69039 -38.84227 -36.66085 -35.07597 -33.66898 -32.72063 -31.66292 -31.37614 -30.02579 -28.60533 -26.33838 -25.03542 -24.32674 -24.07405 -23.66405 -22.18501 -20.99035 -20.55741 -18.74422 -18.01342 -17.83522 -17.35183 -16.88303 -16.41264 -16.15032 -15.89580 -15.41164 -15.29960 -15.09445 -15.00186 -14.87722 -14.77086 -14.70768 -14.04647 -13.53382 -13.43481 -13.21626 -13.04157 -12.96839 -12.90489 -12.74956 -12.58247 -12.39494 -12.26098 -12.09915 -11.95619 -11.83587 -11.68467 -11.60613 -11.43631 -10.81572 -10.59027 -9.57602 -9.26443 -8.98810 -8.67570 -7.87852 -5.32816 -0.02013 0.40292 1.31374 1.45167 1.47875 1.54752 1.77051 2.50216 2.75159 3.14589 3.28050 3.43426 3.66568 3.69190 3.88272 4.09918 4.10473 4.20940 4.30434 4.33655 4.36726 4.38637 4.43597 4.53472 4.54523 4.62907 4.65131 4.69165 4.74816 4.81575 4.91952 4.98516 5.03903 5.07575 5.11896 5.19981 5.29898 5.36244 5.37176 5.45685 5.52848 5.54347 5.59982 5.64610 5.78492 6.16977 6.24311 6.28395 6.36756 7.12090 7.83548 8.38200 9.18874 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013944 B = 0.004322 C = 0.003657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.593723 B = 6476.382478 C = 7654.914510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C 0.049 3.951 4 O -0.205 6.205 5 C 0.021 3.979 6 C -0.113 4.113 7 C -0.094 4.094 8 C -0.135 4.135 9 C -0.092 4.092 10 C -0.137 4.137 11 C -0.183 4.183 12 C 0.133 3.867 13 N -0.528 5.528 14 C 0.062 3.938 15 C 0.193 3.807 16 N -0.613 5.613 17 C -0.265 4.265 18 H 0.070 0.930 19 C -0.052 4.052 20 N -0.938 5.938 21 Si 0.968 3.032 22 H -0.279 1.279 23 H -0.294 1.294 24 H -0.273 1.273 25 C 0.145 3.855 26 C 0.054 3.946 27 H 0.051 0.949 28 H 0.041 0.959 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.034 0.966 38 H 0.013 0.987 39 H 0.064 0.936 40 H -0.010 1.010 41 H 0.051 0.949 42 H 0.249 0.751 43 H 0.017 0.983 44 H 0.062 0.938 45 H 0.103 0.897 46 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.856 -6.696 -10.053 19.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.074 4.074 3 C 0.000 4.000 4 O -0.108 6.108 5 C -0.026 4.026 6 C -0.131 4.131 7 C -0.112 4.112 8 C -0.153 4.153 9 C -0.110 4.110 10 C -0.138 4.138 11 C -0.185 4.185 12 C 0.006 3.994 13 N -0.253 5.253 14 C -0.068 4.068 15 C 0.066 3.934 16 N -0.337 5.337 17 C -0.395 4.395 18 H 0.087 0.913 19 C -0.247 4.247 20 N -0.584 5.584 21 Si 0.796 3.204 22 H -0.205 1.205 23 H -0.220 1.220 24 H -0.198 1.198 25 C 0.019 3.981 26 C -0.074 4.074 27 H 0.070 0.930 28 H 0.061 0.939 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.131 0.869 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.168 0.832 35 H 0.136 0.864 36 H 0.125 0.875 37 H 0.052 0.948 38 H 0.032 0.968 39 H 0.083 0.917 40 H 0.008 0.992 41 H 0.070 0.930 42 H 0.058 0.942 43 H 0.035 0.965 44 H 0.081 0.919 45 H 0.121 0.879 46 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 15.381 -6.872 -10.672 19.942 hybrid contribution -0.195 1.395 1.276 1.900 sum 15.185 -5.477 -9.396 18.679 Atomic orbital electron populations 1.21731 0.93733 1.03076 1.01812 1.20319 0.96373 0.85230 1.05523 1.22703 0.98712 0.95917 0.82633 1.83908 1.70040 1.22145 1.34668 1.20019 1.02411 0.86250 0.93916 1.20324 1.02484 0.89576 1.00761 1.21322 0.98070 0.97275 0.94485 1.21130 1.00833 0.98822 0.94550 1.20465 0.98542 0.91843 1.00136 1.20086 1.04475 0.95685 0.93542 1.20803 1.08522 0.92990 0.96161 1.20356 0.88755 1.01389 0.88926 1.61946 1.25281 1.10337 1.27770 1.22468 0.97458 0.88336 0.98525 1.20505 0.90117 0.96152 0.86595 1.44377 1.68726 1.04768 1.15814 1.19526 1.22975 1.09069 0.87911 0.91262 1.25805 0.97722 1.02447 0.98711 1.70206 1.38606 1.27963 1.21601 0.85330 0.77675 0.78408 0.78985 1.20483 1.22042 1.19850 1.21135 0.93658 0.84614 0.98665 1.22517 0.96777 0.99629 0.88520 0.93028 0.93929 0.89575 0.88388 0.86856 0.83103 0.81388 0.83185 0.86421 0.87517 0.94754 0.96836 0.91746 0.99172 0.93026 0.94161 0.96523 0.91929 0.87890 0.95878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 9.89 71.98 0.71 -2.62 16 2 C -0.04 -0.75 6.24 29.85 0.19 -0.57 16 3 C 0.05 1.35 6.49 24.72 0.16 1.51 16 4 O -0.21 -6.19 10.58 -8.95 -0.09 -6.28 16 5 C 0.02 0.62 7.42 22.99 0.17 0.79 16 6 C -0.11 -2.65 10.07 22.35 0.23 -2.43 16 7 C -0.09 -1.88 10.01 22.30 0.22 -1.66 16 8 C -0.14 -3.09 9.98 22.04 0.22 -2.87 16 9 C -0.09 -2.61 9.22 22.20 0.20 -2.41 16 10 C -0.14 -4.26 5.32 -20.21 -0.11 -4.36 16 11 C -0.18 -5.47 5.13 -18.59 -0.10 -5.57 16 12 C 0.13 3.74 5.26 85.56 0.45 4.19 16 13 N -0.53 -18.41 4.62 -899.80 -4.16 -22.56 16 14 C 0.06 2.57 5.45 86.38 0.47 3.04 16 15 C 0.19 10.03 5.42 86.35 0.47 10.50 16 16 N -0.61 -32.10 3.04 -698.13 -2.12 -34.22 16 17 C -0.26 -14.96 9.63 84.03 0.81 -14.15 16 18 H 0.07 3.76 7.88 -2.91 -0.02 3.74 16 19 C -0.05 -2.96 4.94 84.86 0.42 -2.55 16 20 N -0.94 -57.42 11.15 21.65 0.24 -57.18 16 21 Si 0.97 45.72 29.59 68.60 2.03 47.75 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.14 6.10 6.69 86.35 0.58 6.68 16 26 C 0.05 1.82 5.62 86.39 0.49 2.31 16 27 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.11 1.82 7.06 -2.39 -0.02 1.80 16 32 H 0.15 2.70 8.06 -2.91 -0.02 2.68 16 33 H 0.17 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 35 H 0.12 3.35 8.06 -2.91 -0.02 3.33 16 36 H 0.11 2.36 6.92 -2.38 -0.02 2.34 16 37 H 0.03 0.99 8.12 -2.39 -0.02 0.97 16 38 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 39 H 0.06 2.68 5.31 -2.39 -0.01 2.67 16 40 H -0.01 -0.57 8.14 -2.39 -0.02 -0.58 16 41 H 0.05 3.02 6.12 -2.39 -0.01 3.00 16 42 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 2.50 7.96 -2.39 -0.02 2.48 16 45 H 0.10 2.64 7.99 -2.38 -0.02 2.62 16 46 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -70.77 366.10 2.44 -68.34 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.96 Total: 14.34 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 5.58 Total: -10.18 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -6.04 Total: -113.96 kcal Atomic # 8 Polarization: -6.19 SS G_CDS: -0.09 Total: -6.28 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -70.77 2.44 -68.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092936257.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.442 kcal (2) G-P(sol) polarization free energy of solvation -70.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds