Wall clock time and date at job start Tue Mar 31 2020 11:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38335 * 119.85645 * 269.72860 * 3 2 1 5 5 C 1.37979 * 120.14067 * 179.72215 * 4 3 2 6 6 C 1.39532 * 119.85396 * 0.57366 * 5 4 3 7 7 C 1.47813 * 120.14435 * 179.72723 * 6 5 4 8 8 C 1.31470 * 118.65897 * 244.70998 * 7 6 5 9 9 C 1.50170 * 123.05874 * 180.11110 * 8 7 6 10 10 N 1.46837 * 110.30553 * 343.36815 * 9 8 7 11 11 C 1.46899 * 110.99957 * 287.55606 * 10 9 8 12 12 C 1.50696 * 109.47389 * 293.00433 * 11 10 9 13 13 O 1.21300 * 119.99706 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00437 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00239 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99944 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99678 * 180.02562 * 15 14 12 18 18 N 1.31402 * 120.00388 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99663 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47060 * 59.99730 * 19 17 15 21 21 H 1.48497 * 109.47303 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47054 * 300.00120 * 19 17 15 23 23 C 1.47213 * 110.26305 * 50.98836 * 10 9 8 24 24 C 1.50333 * 118.65949 * 64.96987 * 7 6 5 25 25 C 1.39543 * 119.71726 * 359.69866 * 6 5 4 26 26 C 1.37968 * 119.85267 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.08000 * 119.93307 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.07543 * 180.25152 * 5 4 3 34 34 H 1.08000 * 118.47187 * 0.32885 * 8 7 6 35 35 H 1.09003 * 109.46853 * 223.01392 * 9 8 7 36 36 H 1.08998 * 109.15959 * 103.52864 * 9 8 7 37 37 H 1.09001 * 109.47057 * 53.00458 * 11 10 9 38 38 H 1.09002 * 109.46851 * 173.00401 * 11 10 9 39 39 H 0.96997 * 119.99625 * 0.02562 * 14 12 11 40 40 H 0.96999 * 120.00508 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.63019 * 170.99944 * 23 10 9 42 42 H 1.08998 * 109.78939 * 50.51296 * 23 10 9 43 43 H 1.08995 * 109.43989 * 283.52476 * 24 7 6 44 44 H 1.09009 * 109.43143 * 43.43130 * 24 7 6 45 45 H 1.07993 * 120.06808 * 180.02562 * 25 6 5 46 46 H 1.08005 * 119.92616 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.1997 5 6 2.7218 3.3711 -1.2066 6 6 2.9558 4.0314 0.0001 7 6 3.4485 5.4250 0.0002 8 6 4.6423 5.6717 0.4926 9 6 5.2385 7.0490 0.5441 10 7 4.5108 7.9533 -0.3553 11 6 4.8115 7.6518 -1.7612 12 6 6.2544 7.9788 -2.0476 13 8 6.9628 8.4192 -1.1670 14 7 6.7582 7.7809 -3.2820 15 6 8.0710 8.0779 -3.5424 16 1 8.7015 8.4708 -2.7585 17 6 8.5900 7.8744 -4.8151 18 7 7.8225 7.3978 -5.7693 19 14 10.3791 8.2784 -5.1697 20 1 11.2545 7.4624 -4.2905 21 1 10.6832 7.9733 -6.5908 22 1 10.6220 9.7202 -4.9094 23 6 3.0638 7.8741 -0.0965 24 6 2.5616 6.5033 -0.5573 25 6 2.7222 3.3708 1.2068 26 6 2.2623 2.0700 1.1998 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0907 1.5543 -2.1330 33 1 2.9009 3.8768 -2.1439 34 1 5.2225 4.8449 0.8747 35 1 6.2847 7.0035 0.2412 36 1 5.1767 7.4277 1.5643 37 1 4.6341 6.5934 -1.9518 38 1 4.1684 8.2501 -2.4066 39 1 6.1918 7.4284 -3.9861 40 1 8.1849 7.2554 -6.6577 41 1 2.5490 8.6581 -0.6518 42 1 2.8725 7.9946 0.9698 43 1 2.5771 6.4588 -1.6463 44 1 1.5418 6.3535 -0.2027 45 1 2.9011 3.8766 2.1440 46 1 2.0815 1.5574 2.1331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093262695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:54 Heat of formation + Delta-G solvation = -1.544040 kcal Electronic energy + Delta-G solvation = -25478.215713 eV Core-core repulsion = 21946.259179 eV Total energy + Delta-G solvation = -3531.956534 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.09517 -39.08286 -37.51734 -34.88906 -33.86383 -32.42475 -31.22074 -31.10686 -30.62938 -29.16267 -27.50084 -24.86011 -24.09105 -23.46025 -22.58133 -22.06249 -20.82727 -19.35461 -18.05144 -17.40200 -16.63410 -16.19760 -15.63635 -15.58030 -14.95830 -14.66188 -14.34327 -14.21384 -14.00881 -13.84327 -13.72888 -13.65156 -13.50044 -13.42842 -12.91255 -12.49595 -12.36102 -12.23649 -11.92580 -11.76206 -11.50512 -11.48389 -11.35025 -11.17844 -11.04413 -11.00545 -10.74020 -10.62589 -10.42012 -10.18252 -9.45399 -9.04041 -9.00168 -8.39637 -8.31098 -7.93507 -7.81589 -6.38381 -3.78992 1.12590 1.32840 2.21770 3.22182 3.27492 3.31973 3.63996 3.95257 4.07100 4.28304 4.53194 4.63882 4.73260 4.87268 4.92388 4.98634 5.08452 5.14050 5.19054 5.27099 5.27974 5.31990 5.35703 5.44038 5.52591 5.60556 5.65350 5.69972 5.76342 5.85109 5.89988 5.92649 5.97096 6.01209 6.04959 6.08471 6.21153 6.33336 6.34551 6.49086 6.50168 6.63231 6.89070 6.96597 7.35495 7.40950 7.58074 8.09915 8.65706 9.21533 9.58569 10.10603 10.79454 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002905 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.574654 B = 9637.773701 C =10769.419615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.089 4.089 4 C -0.116 4.116 5 C -0.105 4.105 6 C -0.044 4.044 7 C -0.104 4.104 8 C -0.157 4.157 9 C 0.077 3.923 10 N -0.504 5.504 11 C 0.042 3.958 12 C 0.445 3.555 13 O -0.579 6.579 14 N -0.565 5.565 15 C -0.298 4.298 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.903 5.903 19 Si 0.930 3.070 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.053 3.947 24 C -0.113 4.113 25 C -0.108 4.108 26 C -0.118 4.118 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.107 0.893 35 H 0.111 0.889 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.391 0.609 40 H 0.271 0.729 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.121 0.879 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.967 -11.866 10.380 22.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.134 4.134 5 C -0.123 4.123 6 C -0.044 4.044 7 C -0.104 4.104 8 C -0.177 4.177 9 C -0.051 4.051 10 N -0.225 5.225 11 C -0.090 4.090 12 C 0.231 3.769 13 O -0.463 6.463 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.076 4.076 24 C -0.152 4.152 25 C -0.126 4.126 26 C -0.136 4.136 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.125 0.875 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.104 0.896 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.095 0.905 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.139 0.861 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -15.270 -11.102 10.856 21.778 hybrid contribution 0.245 -1.031 -0.963 1.432 sum -15.026 -12.133 9.893 21.699 Atomic orbital electron populations 1.21747 0.94800 1.01572 1.02233 1.20540 0.96124 0.92800 1.02752 1.19911 0.99605 0.96210 0.93205 1.20956 1.00121 0.94849 0.97480 1.21277 0.98759 0.94604 0.97621 1.19034 0.98812 0.93494 0.93069 1.19630 0.95756 0.92146 1.02880 1.23464 0.95416 1.00236 0.98585 1.21291 1.00303 0.86075 0.97404 1.62284 1.05697 1.51117 1.03451 1.21894 0.97066 0.99963 0.90060 1.19774 0.88562 0.84767 0.83825 1.90486 1.60767 1.49712 1.45382 1.41858 1.11680 1.57148 1.09470 1.19643 0.86534 1.40155 0.96420 0.87990 1.25245 1.00141 0.97257 0.95305 1.69599 1.36597 1.45274 1.02976 0.85936 0.82124 0.79117 0.77146 1.19953 1.21015 1.19886 1.22308 0.88686 0.94910 1.01654 1.21019 0.98607 0.94517 1.01028 1.21248 0.99471 0.94589 0.97299 1.20911 1.00516 0.94832 0.97377 0.92608 0.92497 0.92534 0.91179 0.91090 0.86155 0.85935 0.87519 0.87104 0.89809 0.92921 0.89572 0.77547 0.91874 0.90244 0.90523 0.90620 0.90840 0.86118 0.86305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.89 37.16 0.37 -0.63 16 2 C -0.08 -0.66 6.06 -27.88 -0.17 -0.82 16 3 C -0.09 -0.90 5.14 -104.54 -0.54 -1.44 16 4 C -0.12 -1.27 9.68 -39.64 -0.38 -1.65 16 5 C -0.10 -1.29 9.75 -39.19 -0.38 -1.67 16 6 C -0.04 -0.56 5.17 -105.01 -0.54 -1.10 16 7 C -0.10 -1.38 4.64 -102.72 -0.48 -1.86 16 8 C -0.16 -2.28 8.95 -36.40 -0.33 -2.60 16 9 C 0.08 1.26 5.57 -5.27 -0.03 1.23 16 10 N -0.50 -8.51 4.75 -237.57 -1.13 -9.63 16 11 C 0.04 0.76 4.50 -4.98 -0.02 0.74 16 12 C 0.45 10.63 7.39 -10.99 -0.08 10.55 16 13 O -0.58 -15.64 14.07 5.54 0.08 -15.57 16 14 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 15 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 16 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.79 13.05 55.50 0.72 -24.07 16 19 Si 0.93 21.25 29.55 -169.99 -5.02 16.23 16 20 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 23 C 0.05 0.68 6.01 -3.61 -0.02 0.66 16 24 C -0.11 -1.37 5.22 -28.02 -0.15 -1.52 16 25 C -0.11 -1.23 9.68 -39.19 -0.38 -1.61 16 26 C -0.12 -1.21 9.68 -39.64 -0.38 -1.60 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.11 1.50 7.98 -52.49 -0.42 1.08 16 35 H 0.11 2.20 5.86 -51.93 -0.30 1.90 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.05 0.92 6.03 -51.93 -0.31 0.61 16 38 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 39 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 40 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 43 H 0.08 0.93 7.14 -51.93 -0.37 0.56 16 44 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 46 H 0.12 0.98 8.06 -52.48 -0.42 0.55 16 LS Contribution 374.31 15.07 5.64 5.64 Total: -1.00 -31.04 374.31 -10.67 -41.70 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.15 Total: 11.58 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -3.75 Total: -11.34 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.46 Total: -48.26 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.08 Total: -15.57 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.04 -10.67 -41.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093262695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.161 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds