Wall clock time and date at job start Tue Mar 31 2020 11:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50708 * 109.47141 * 2 1 4 4 C 1.38335 * 119.85645 * 269.72860 * 3 2 1 5 5 C 1.37979 * 120.14067 * 179.72215 * 4 3 2 6 6 C 1.39532 * 119.85396 * 0.57366 * 5 4 3 7 7 C 1.47813 * 120.14435 * 179.72723 * 6 5 4 8 8 C 1.31470 * 118.65897 * 244.70998 * 7 6 5 9 9 C 1.50170 * 123.05874 * 180.11110 * 8 7 6 10 10 N 1.46837 * 110.30553 * 343.36815 * 9 8 7 11 11 C 1.46899 * 110.99957 * 287.55606 * 10 9 8 12 12 C 1.50696 * 109.47389 * 293.00433 * 11 10 9 13 13 O 1.21300 * 119.99706 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00437 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00239 * 180.02562 * 14 12 11 16 16 H 1.08000 * 119.99944 * 359.97438 * 15 14 12 17 17 C 1.38948 * 119.99678 * 180.02562 * 15 14 12 18 18 N 1.31402 * 120.00388 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 119.99663 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47060 * 59.99730 * 19 17 15 21 21 H 1.48497 * 109.47303 * 179.97438 * 19 17 15 22 22 H 1.48509 * 109.47054 * 300.00120 * 19 17 15 23 23 C 1.47213 * 110.26305 * 50.98836 * 10 9 8 24 24 C 1.50333 * 118.65949 * 64.96987 * 7 6 5 25 25 C 1.39543 * 119.71726 * 359.69866 * 6 5 4 26 26 C 1.37968 * 119.85267 * 0.02562 * 25 6 5 27 27 H 1.09002 * 109.47153 * 299.99670 * 1 2 3 28 28 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47261 * 59.99842 * 1 2 3 30 30 H 1.08996 * 109.47853 * 120.00301 * 2 1 3 31 31 H 1.09002 * 109.47153 * 240.00330 * 2 1 3 32 32 H 1.08000 * 119.93307 * 359.97438 * 4 3 2 33 33 H 1.07998 * 120.07543 * 180.25152 * 5 4 3 34 34 H 1.08000 * 118.47187 * 0.32885 * 8 7 6 35 35 H 1.09003 * 109.46853 * 223.01392 * 9 8 7 36 36 H 1.08998 * 109.15959 * 103.52864 * 9 8 7 37 37 H 1.09001 * 109.47057 * 53.00458 * 11 10 9 38 38 H 1.09002 * 109.46851 * 173.00401 * 11 10 9 39 39 H 0.96997 * 119.99625 * 0.02562 * 14 12 11 40 40 H 0.96999 * 120.00508 * 180.02562 * 18 17 15 41 41 H 1.09000 * 109.63019 * 170.99944 * 23 10 9 42 42 H 1.08998 * 109.78939 * 50.51296 * 23 10 9 43 43 H 1.08995 * 109.43989 * 283.52476 * 24 7 6 44 44 H 1.09009 * 109.43143 * 43.43130 * 24 7 6 45 45 H 1.07993 * 120.06808 * 180.02562 * 25 6 5 46 46 H 1.08005 * 119.92616 * 179.97438 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0683 -1.1997 5 6 2.7218 3.3711 -1.2066 6 6 2.9558 4.0314 0.0001 7 6 3.4485 5.4250 0.0002 8 6 4.6423 5.6717 0.4926 9 6 5.2385 7.0490 0.5441 10 7 4.5108 7.9533 -0.3553 11 6 4.8115 7.6518 -1.7612 12 6 6.2544 7.9788 -2.0476 13 8 6.9628 8.4192 -1.1670 14 7 6.7582 7.7809 -3.2820 15 6 8.0710 8.0779 -3.5424 16 1 8.7015 8.4708 -2.7585 17 6 8.5900 7.8744 -4.8151 18 7 7.8225 7.3978 -5.7693 19 14 10.3791 8.2784 -5.1697 20 1 11.2545 7.4624 -4.2905 21 1 10.6832 7.9733 -6.5908 22 1 10.6220 9.7202 -4.9094 23 6 3.0638 7.8741 -0.0965 24 6 2.5616 6.5033 -0.5573 25 6 2.7222 3.3708 1.2068 26 6 2.2623 2.0700 1.1998 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 2.0907 1.5543 -2.1330 33 1 2.9009 3.8768 -2.1439 34 1 5.2225 4.8449 0.8747 35 1 6.2847 7.0035 0.2412 36 1 5.1767 7.4277 1.5643 37 1 4.6341 6.5934 -1.9518 38 1 4.1684 8.2501 -2.4066 39 1 6.1918 7.4284 -3.9861 40 1 8.1849 7.2554 -6.6577 41 1 2.5490 8.6581 -0.6518 42 1 2.8725 7.9946 0.9698 43 1 2.5771 6.4588 -1.6463 44 1 1.5418 6.3535 -0.2027 45 1 2.9011 3.8766 2.1440 46 1 2.0815 1.5574 2.1331 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093262695.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:53 Heat of formation + Delta-G solvation = -19.426156 kcal Electronic energy + Delta-G solvation = -25478.991139 eV Core-core repulsion = 21946.259179 eV Total energy + Delta-G solvation = -3532.731961 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.25895 -40.24102 -39.15473 -36.05555 -35.61566 -33.45762 -33.21410 -32.03137 -31.67515 -30.25771 -28.80238 -26.61776 -25.18256 -24.45522 -23.48718 -23.12419 -21.75670 -21.06114 -19.96130 -18.71131 -17.88082 -17.67039 -16.62222 -16.52902 -16.40589 -16.29979 -15.84182 -15.45125 -15.25816 -15.08747 -14.91490 -14.58818 -14.45591 -14.24579 -14.04820 -13.97268 -13.52005 -13.42594 -13.39323 -12.97554 -12.83573 -12.72052 -12.53075 -12.42346 -12.26151 -12.14447 -12.11365 -11.84157 -11.68769 -11.60109 -11.45166 -10.30835 -10.03944 -9.94966 -9.87745 -9.26269 -9.18060 -8.45612 -5.94220 0.24690 0.47884 1.15141 1.39638 1.40941 1.52051 2.06634 2.28908 2.78782 2.82266 3.21119 3.39521 3.67894 3.87336 3.91789 3.96013 4.08996 4.10556 4.24052 4.30885 4.33271 4.36399 4.49196 4.50461 4.54446 4.58919 4.63599 4.70431 4.71177 4.74465 4.89890 4.99473 5.00268 5.04285 5.08842 5.14236 5.19300 5.33157 5.39335 5.41256 5.58669 5.62872 5.70413 5.81588 5.93353 6.07504 6.12423 6.19705 6.61589 7.13714 7.57319 8.13239 8.71796 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015351 B = 0.002905 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1823.574654 B = 9637.773701 C =10769.419615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.084 4.084 3 C -0.089 4.089 4 C -0.124 4.124 5 C -0.119 4.119 6 C -0.065 4.065 7 C -0.086 4.086 8 C -0.177 4.177 9 C 0.085 3.915 10 N -0.523 5.523 11 C 0.058 3.942 12 C 0.442 3.558 13 O -0.614 6.614 14 N -0.575 5.575 15 C -0.332 4.332 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.272 1.272 21 H -0.270 1.270 22 H -0.271 1.271 23 C 0.055 3.945 24 C -0.111 4.111 25 C -0.114 4.114 26 C -0.121 4.121 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.050 0.950 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.134 0.866 33 H 0.119 0.881 34 H 0.104 0.896 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.108 0.892 39 H 0.395 0.605 40 H 0.277 0.723 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.129 0.871 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.599 -13.054 10.482 24.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.122 4.122 3 C -0.089 4.089 4 C -0.142 4.142 5 C -0.137 4.137 6 C -0.065 4.065 7 C -0.086 4.086 8 C -0.196 4.196 9 C -0.043 4.043 10 N -0.245 5.245 11 C -0.073 4.073 12 C 0.230 3.770 13 O -0.500 6.500 14 N -0.213 5.213 15 C -0.461 4.461 16 H 0.097 0.903 17 C -0.213 4.213 18 N -0.563 5.563 19 Si 0.815 3.185 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.196 1.196 23 C -0.073 4.073 24 C -0.149 4.149 25 C -0.132 4.132 26 C -0.139 4.139 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.069 0.931 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.086 0.914 36 H 0.112 0.888 37 H 0.080 0.920 38 H 0.126 0.874 39 H 0.228 0.772 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.112 0.888 45 H 0.147 0.853 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -16.934 -12.298 10.958 23.624 hybrid contribution 0.670 -0.720 -0.936 1.358 sum -16.264 -13.018 10.022 23.118 Atomic orbital electron populations 1.21729 0.94039 1.02441 1.01910 1.20600 0.96680 0.91270 1.03604 1.20248 0.98500 0.97324 0.92832 1.21182 0.99922 0.94494 0.98619 1.21356 0.99565 0.95429 0.97389 1.19081 1.00273 0.93348 0.93831 1.19820 0.95119 0.93073 1.00590 1.23231 0.96257 0.99045 1.01094 1.21044 0.98109 0.87499 0.97677 1.62261 1.08300 1.51568 1.02347 1.21707 0.93127 1.00729 0.91728 1.20781 0.90652 0.82960 0.82651 1.90461 1.62446 1.50873 1.46257 1.41932 1.11194 1.57832 1.10302 1.19618 0.87764 1.42077 0.96668 0.90307 1.26030 1.04137 0.96538 0.94613 1.69664 1.38126 1.45184 1.03298 0.85008 0.77097 0.78829 0.77522 1.19773 1.19457 1.19628 1.22424 0.86019 0.95925 1.02884 1.21045 0.99344 0.93472 1.01038 1.21408 0.99430 0.95198 0.97169 1.21206 0.99753 0.94470 0.98472 0.92727 0.91070 0.93067 0.90089 0.90539 0.84779 0.86319 0.87815 0.91370 0.88827 0.92039 0.87408 0.77168 0.91330 0.88630 0.89203 0.90465 0.88760 0.85343 0.84125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.89 71.98 0.71 -0.91 16 2 C -0.08 -1.09 6.06 29.85 0.18 -0.91 16 3 C -0.09 -1.62 5.14 -19.81 -0.10 -1.73 16 4 C -0.12 -2.54 9.68 22.23 0.22 -2.33 16 5 C -0.12 -2.84 9.75 22.52 0.22 -2.62 16 6 C -0.07 -1.59 5.17 -20.12 -0.10 -1.69 16 7 C -0.09 -2.20 4.64 -17.93 -0.08 -2.28 16 8 C -0.18 -5.14 8.95 25.03 0.22 -4.92 16 9 C 0.08 2.84 5.57 85.40 0.48 3.31 16 10 N -0.52 -17.41 4.75 -905.55 -4.30 -21.71 16 11 C 0.06 2.12 4.50 85.56 0.39 2.51 16 12 C 0.44 21.72 7.39 87.66 0.65 22.37 16 13 O -0.61 -34.57 14.07 -3.09 -0.04 -34.62 16 14 N -0.58 -30.36 5.29 -306.98 -1.62 -31.99 16 15 C -0.33 -19.20 9.68 84.04 0.81 -18.39 16 16 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 17 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 18 N -0.92 -50.58 13.05 21.66 0.28 -50.30 16 19 Si 0.99 43.64 29.55 68.60 2.03 45.66 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 23 C 0.05 1.31 6.01 86.27 0.52 1.83 16 24 C -0.11 -2.46 5.22 29.76 0.16 -2.30 16 25 C -0.11 -2.44 9.68 22.52 0.22 -2.22 16 26 C -0.12 -2.24 9.68 22.23 0.22 -2.02 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 31 H 0.08 0.92 8.08 -2.39 -0.02 0.90 16 32 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 33 H 0.12 2.81 8.06 -2.91 -0.02 2.78 16 34 H 0.10 3.02 7.98 -2.91 -0.02 3.00 16 35 H 0.07 2.88 5.86 -2.39 -0.01 2.86 16 36 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 37 H 0.06 2.14 6.03 -2.39 -0.01 2.13 16 38 H 0.11 3.46 8.08 -2.39 -0.02 3.44 16 39 H 0.39 19.88 7.90 -92.71 -0.73 19.15 16 40 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.09 1.93 8.08 -2.39 -0.02 1.91 16 43 H 0.08 1.74 7.14 -2.39 -0.02 1.72 16 44 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 45 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 46 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -67.94 374.31 1.75 -66.20 By element: Atomic # 1 Polarization: 39.07 SS G_CDS: 0.24 Total: 39.31 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.16 Total: -12.56 kcal Atomic # 7 Polarization: -98.36 SS G_CDS: -5.64 Total: -104.00 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.04 Total: -34.62 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Total: -67.94 1.75 -66.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093262695.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.771 kcal (2) G-P(sol) polarization free energy of solvation -67.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds