Wall clock time and date at job start Tue Mar 31 2020 10:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 120.00006 * 2 1 4 4 C 1.38211 * 119.99784 * 180.25721 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.38211 * 119.99838 * 179.75956 * 2 1 3 8 8 C 1.50706 * 120.00262 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.50083 * 34.93492 * 8 7 2 10 10 C 1.53096 * 109.50838 * 274.80532 * 8 7 2 11 11 N 1.47006 * 109.25930 * 183.21324 * 10 8 7 12 12 C 1.46899 * 111.00404 * 182.39112 * 11 10 8 13 13 C 1.52995 * 109.47322 * 170.31992 * 12 11 10 14 14 H 1.08998 * 109.47385 * 55.00546 * 13 12 11 15 15 C 1.47202 * 109.47343 * 294.99855 * 13 12 11 16 16 N 7.11974 * 49.68574 * 164.01386 * 2 1 3 17 17 C 1.53004 * 109.46819 * 175.00086 * 13 12 11 18 18 C 1.50707 * 109.46648 * 184.99980 * 17 13 12 19 19 H 1.07999 * 120.00320 * 359.97438 * 18 17 13 20 20 C 1.37880 * 119.99413 * 180.02562 * 18 17 13 21 21 N 1.31513 * 119.99693 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00336 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46936 * 90.00106 * 22 20 18 24 24 H 1.48500 * 109.47050 * 209.99917 * 22 20 18 25 25 H 1.48502 * 109.47103 * 330.00057 * 22 20 18 26 26 C 1.47015 * 110.75289 * 58.61360 * 11 10 8 27 27 C 1.53100 * 109.26051 * 301.38994 * 26 11 10 28 28 O 1.43010 * 109.50580 * 155.01710 * 8 7 2 29 29 H 1.08996 * 109.47283 * 270.23903 * 1 2 3 30 30 H 1.08997 * 109.46941 * 30.24198 * 1 2 3 31 31 H 1.09001 * 109.46625 * 150.23756 * 1 2 3 32 32 H 1.07998 * 119.99823 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 34 34 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 35 35 H 1.07997 * 120.00464 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.50463 * 303.15442 * 10 8 7 37 37 H 1.09009 * 109.50295 * 63.27752 * 10 8 7 38 38 H 1.09000 * 109.46695 * 290.32462 * 12 11 10 39 39 H 1.09003 * 109.46664 * 50.31794 * 12 11 10 40 40 H 1.08987 * 109.47239 * 304.99893 * 17 13 12 41 41 H 1.09000 * 109.46795 * 65.00558 * 17 13 12 42 42 H 0.97001 * 120.00319 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.51008 * 181.44691 * 26 11 10 44 44 H 1.09007 * 109.54195 * 61.34198 * 26 11 10 45 45 H 1.09002 * 109.50048 * 296.91068 * 27 26 11 46 46 H 1.08995 * 109.50357 * 176.78415 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 0.0000 0.0001 6 6 3.5807 -1.1970 0.0055 7 6 2.1981 -1.1970 0.0050 8 6 1.4446 -2.5021 0.0099 9 1 0.5334 -2.3984 -0.5792 10 6 1.0837 -2.8787 1.4493 11 7 0.4173 -4.1890 1.4551 12 6 0.0028 -4.5629 2.8139 13 6 -0.8915 -5.8027 2.7514 14 1 -0.3707 -6.6000 2.2211 15 6 -2.1379 -5.4734 2.0408 16 7 -3.0993 -5.2189 1.4951 17 6 -1.2214 -6.2657 4.1719 18 6 -1.9989 -7.5553 4.1119 19 1 -2.2346 -7.9999 3.1564 20 6 -2.4102 -8.1670 5.2772 21 7 -3.0883 -9.2926 5.2250 22 14 -2.0044 -7.3969 6.9299 23 1 -3.0948 -6.4693 7.3248 24 1 -1.8678 -8.4643 7.9532 25 1 -0.7282 -6.6448 6.8256 26 6 1.2871 -5.2185 0.8677 27 6 1.6460 -4.8184 -0.5659 28 8 2.2643 -3.5288 -0.5550 29 1 -0.3633 0.0043 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3632 -0.8921 -0.5102 32 1 1.6583 2.1326 0.0004 33 1 4.1205 2.1326 -0.0092 34 1 5.3517 0.0000 0.0006 35 1 4.1206 -2.1323 0.0094 36 1 1.9914 -2.9292 2.0507 37 1 0.4124 -2.1270 1.8647 38 1 0.8850 -4.7811 3.4157 39 1 -0.5498 -3.7386 3.2649 40 1 -0.2965 -6.4245 4.7262 41 1 -1.8190 -5.5041 4.6726 42 1 -3.3780 -9.7228 6.0447 43 1 0.7643 -6.1749 0.8586 44 1 2.1981 -5.3073 1.4596 45 1 0.7403 -4.7826 -1.1713 46 1 2.3366 -5.5497 -0.9857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131420964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:15 Heat of formation + Delta-G solvation = 4.612874 kcal Electronic energy + Delta-G solvation = -25852.487598 eV Core-core repulsion = 22320.798048 eV Total energy + Delta-G solvation = -3531.689550 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.45859 -39.01306 -37.15384 -35.25889 -33.68166 -33.48881 -32.32542 -31.82467 -29.80667 -28.36356 -27.16257 -25.97103 -24.25997 -23.23249 -22.03541 -21.48724 -20.93642 -20.36278 -17.18816 -16.97744 -16.82192 -16.47451 -16.12790 -15.51518 -15.07989 -14.93477 -14.69201 -14.56553 -14.34672 -13.88797 -13.78507 -13.34386 -13.30738 -13.14477 -12.86044 -12.53748 -12.50496 -12.33232 -12.13553 -11.94209 -11.79621 -11.52268 -11.43237 -11.33056 -11.24011 -11.06073 -10.78068 -10.60312 -10.26713 -10.04715 -9.94438 -9.71343 -9.35810 -8.97216 -8.79312 -8.64680 -8.40493 -6.13569 -4.14508 1.09112 1.19791 3.24490 3.31855 3.32613 3.43011 3.57545 3.65745 3.72472 3.81140 4.35435 4.56603 4.62653 4.67418 4.76590 4.81148 4.86170 4.90681 4.96667 5.07237 5.11731 5.20875 5.21751 5.34445 5.39062 5.46283 5.47618 5.53514 5.56746 5.59014 5.71427 5.73474 5.78997 5.84563 5.91404 5.97108 6.13384 6.24435 6.25416 6.31895 6.42339 6.78876 6.87887 6.90631 6.92545 7.05111 7.08776 7.60053 8.37218 8.50453 8.89690 9.46124 10.99475 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.002862 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.032054 B = 9782.171901 C = 9946.826445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.073 4.073 3 C -0.123 4.123 4 C -0.117 4.117 5 C -0.131 4.131 6 C -0.088 4.088 7 C -0.083 4.083 8 C 0.135 3.865 9 H 0.079 0.921 10 C 0.033 3.967 11 N -0.539 5.539 12 C 0.060 3.940 13 C 0.020 3.980 14 H 0.106 0.894 15 C 0.253 3.747 16 N -0.470 5.470 17 C -0.005 4.005 18 C -0.528 4.528 19 H 0.074 0.926 20 C 0.072 3.928 21 N -0.896 5.896 22 Si 0.877 3.123 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.263 1.263 26 C 0.011 3.989 27 C 0.065 3.935 28 O -0.380 6.380 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.122 0.878 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.045 0.955 37 H 0.086 0.914 38 H 0.056 0.944 39 H 0.081 0.919 40 H 0.037 0.963 41 H 0.021 0.979 42 H 0.265 0.735 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.060 0.940 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.917 18.664 -9.808 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.073 4.073 3 C -0.141 4.141 4 C -0.135 4.135 5 C -0.149 4.149 6 C -0.106 4.106 7 C -0.083 4.083 8 C 0.077 3.923 9 H 0.097 0.903 10 C -0.095 4.095 11 N -0.263 5.263 12 C -0.068 4.068 13 C -0.002 4.002 14 H 0.123 0.877 15 C -0.065 4.065 16 N -0.146 5.146 17 C -0.044 4.044 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.704 3.296 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.188 1.188 26 C -0.117 4.117 27 C -0.011 4.011 28 O -0.299 6.299 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.140 0.860 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.055 0.945 41 H 0.039 0.961 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 14.132 18.966 -10.884 26.036 hybrid contribution 0.942 -0.039 1.831 2.060 sum 15.074 18.928 -9.053 25.835 Atomic orbital electron populations 1.20931 0.91010 1.03206 1.02828 1.19696 0.96118 0.92278 0.99244 1.20970 0.94262 0.97243 1.01668 1.21146 0.94315 0.98054 0.99945 1.21151 0.99881 0.92489 1.01348 1.21013 0.93532 0.98390 0.97708 1.19423 0.93978 0.92827 1.02084 1.20886 0.92703 0.85164 0.93523 0.90322 1.22679 0.98257 0.92145 0.96454 1.62227 1.40325 1.01923 1.21860 1.22284 0.98408 0.98005 0.88118 1.18987 0.86510 0.96535 0.98130 0.87678 1.28609 0.93972 0.91854 0.92034 1.80930 1.11916 1.10312 1.11447 1.19646 0.97976 0.97590 0.89185 1.21009 1.35032 1.05553 0.95001 0.90773 1.24989 0.94334 0.94607 0.99153 1.69902 1.37553 1.17604 1.28361 0.86820 0.79516 0.79255 0.83963 1.20217 1.21236 1.18771 1.22908 0.96097 0.96692 0.96040 1.22683 0.98454 0.84344 0.95660 1.87937 1.42627 1.17261 1.82076 0.90721 0.91396 0.90916 0.86005 0.86204 0.86133 0.85328 0.93666 0.89615 0.92624 0.90027 0.94535 0.96073 0.92530 0.88636 0.93469 0.92186 0.88172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.05 9.42 36.01 0.34 -0.71 16 2 C -0.07 -0.72 5.88 -104.62 -0.62 -1.33 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 4 C -0.12 -0.98 10.05 -39.58 -0.40 -1.38 16 5 C -0.13 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.09 -0.92 9.35 -39.58 -0.37 -1.29 16 7 C -0.08 -0.89 5.07 -104.62 -0.53 -1.42 16 8 C 0.14 1.52 2.52 -27.83 -0.07 1.45 16 9 H 0.08 0.92 6.16 -51.93 -0.32 0.60 16 10 C 0.03 0.37 4.91 -3.72 -0.02 0.36 16 11 N -0.54 -6.85 4.43 -234.31 -1.04 -7.89 16 12 C 0.06 0.83 4.32 -3.83 -0.02 0.81 16 13 C 0.02 0.35 2.13 -93.41 -0.20 0.15 16 14 H 0.11 1.72 6.29 -51.93 -0.33 1.40 16 15 C 0.25 5.10 13.66 -20.81 -0.28 4.82 16 16 N -0.47 -10.45 18.53 42.09 0.78 -9.67 16 17 C -0.01 -0.11 3.49 -27.88 -0.10 -0.20 16 18 C -0.53 -14.04 9.15 -34.44 -0.32 -14.36 16 19 H 0.07 2.17 7.84 -52.49 -0.41 1.76 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -26.84 13.96 55.43 0.77 -26.07 16 22 Si 0.88 20.46 27.47 -169.99 -4.67 15.80 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.26 -5.67 6.54 56.52 0.37 -5.30 16 26 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 27 C 0.07 0.69 7.01 37.21 0.26 0.95 16 28 O -0.38 -4.48 9.31 -35.23 -0.33 -4.81 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 31 H 0.07 0.66 6.03 -51.93 -0.31 0.35 16 32 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.32 7.35 -52.49 -0.39 0.93 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.09 0.94 7.91 -51.92 -0.41 0.53 16 38 H 0.06 0.69 8.12 -51.93 -0.42 0.27 16 39 H 0.08 1.10 8.04 -51.93 -0.42 0.68 16 40 H 0.04 0.73 7.20 -51.94 -0.37 0.35 16 41 H 0.02 0.45 7.57 -51.93 -0.39 0.05 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.10 1.10 6.28 -51.93 -0.33 0.78 16 44 H 0.05 0.52 8.14 -51.92 -0.42 0.10 16 45 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 LS Contribution 372.14 15.07 5.61 5.61 Total: -1.00 -31.66 372.14 -9.16 -40.82 By element: Atomic # 1 Polarization: 6.47 SS G_CDS: -7.07 Total: -0.60 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -3.21 Total: -13.19 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.52 Total: -43.62 kcal Atomic # 8 Polarization: -4.48 SS G_CDS: -0.33 Total: -4.81 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.80 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.66 -9.16 -40.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131420964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.431 kcal (2) G-P(sol) polarization free energy of solvation -31.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds