Wall clock time and date at job start Tue Mar 31 2020 10:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38258 * 120.00006 * 2 1 4 4 C 1.38211 * 119.99784 * 180.25721 * 3 2 1 5 5 C 1.38256 * 120.00062 * 359.47854 * 4 3 2 6 6 C 1.38214 * 120.00160 * 0.26318 * 5 4 3 7 7 C 1.38211 * 119.99838 * 179.75956 * 2 1 3 8 8 C 1.50706 * 120.00262 * 0.02562 * 7 2 1 9 9 H 1.08996 * 109.50083 * 34.93492 * 8 7 2 10 10 C 1.53096 * 109.50838 * 274.80532 * 8 7 2 11 11 N 1.47006 * 109.25930 * 183.21324 * 10 8 7 12 12 C 1.46899 * 111.00404 * 182.39112 * 11 10 8 13 13 C 1.52995 * 109.47322 * 170.31992 * 12 11 10 14 14 H 1.08998 * 109.47385 * 55.00546 * 13 12 11 15 15 C 1.47202 * 109.47343 * 294.99855 * 13 12 11 16 16 N 7.11974 * 49.68574 * 164.01386 * 2 1 3 17 17 C 1.53004 * 109.46819 * 175.00086 * 13 12 11 18 18 C 1.50707 * 109.46648 * 184.99980 * 17 13 12 19 19 H 1.07999 * 120.00320 * 359.97438 * 18 17 13 20 20 C 1.37880 * 119.99413 * 180.02562 * 18 17 13 21 21 N 1.31513 * 119.99693 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 120.00336 * 0.02562 * 20 18 17 23 23 H 1.48501 * 109.46936 * 90.00106 * 22 20 18 24 24 H 1.48500 * 109.47050 * 209.99917 * 22 20 18 25 25 H 1.48502 * 109.47103 * 330.00057 * 22 20 18 26 26 C 1.47015 * 110.75289 * 58.61360 * 11 10 8 27 27 C 1.53100 * 109.26051 * 301.38994 * 26 11 10 28 28 O 1.43010 * 109.50580 * 155.01710 * 8 7 2 29 29 H 1.08996 * 109.47283 * 270.23903 * 1 2 3 30 30 H 1.08997 * 109.46941 * 30.24198 * 1 2 3 31 31 H 1.09001 * 109.46625 * 150.23756 * 1 2 3 32 32 H 1.07998 * 119.99823 * 0.02562 * 3 2 1 33 33 H 1.08002 * 120.00200 * 179.76459 * 4 3 2 34 34 H 1.07999 * 120.00077 * 180.28382 * 5 4 3 35 35 H 1.07997 * 120.00464 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.50463 * 303.15442 * 10 8 7 37 37 H 1.09009 * 109.50295 * 63.27752 * 10 8 7 38 38 H 1.09000 * 109.46695 * 290.32462 * 12 11 10 39 39 H 1.09003 * 109.46664 * 50.31794 * 12 11 10 40 40 H 1.08987 * 109.47239 * 304.99893 * 17 13 12 41 41 H 1.09000 * 109.46795 * 65.00558 * 17 13 12 42 42 H 0.97001 * 120.00319 * 180.02562 * 21 20 18 43 43 H 1.09001 * 109.51008 * 181.44691 * 26 11 10 44 44 H 1.09007 * 109.54195 * 61.34198 * 26 11 10 45 45 H 1.09002 * 109.50048 * 296.91068 * 27 26 11 46 46 H 1.08995 * 109.50357 * 176.78415 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1974 0.0000 4 6 3.5805 1.1973 -0.0054 5 6 4.2717 0.0000 0.0001 6 6 3.5807 -1.1970 0.0055 7 6 2.1981 -1.1970 0.0050 8 6 1.4446 -2.5021 0.0099 9 1 0.5334 -2.3984 -0.5792 10 6 1.0837 -2.8787 1.4493 11 7 0.4173 -4.1890 1.4551 12 6 0.0028 -4.5629 2.8139 13 6 -0.8915 -5.8027 2.7514 14 1 -0.3707 -6.6000 2.2211 15 6 -2.1379 -5.4734 2.0408 16 7 -3.0993 -5.2189 1.4951 17 6 -1.2214 -6.2657 4.1719 18 6 -1.9989 -7.5553 4.1119 19 1 -2.2346 -7.9999 3.1564 20 6 -2.4102 -8.1670 5.2772 21 7 -3.0883 -9.2926 5.2250 22 14 -2.0044 -7.3969 6.9299 23 1 -3.0948 -6.4693 7.3248 24 1 -1.8678 -8.4643 7.9532 25 1 -0.7282 -6.6448 6.8256 26 6 1.2871 -5.2185 0.8677 27 6 1.6460 -4.8184 -0.5659 28 8 2.2643 -3.5288 -0.5550 29 1 -0.3633 0.0043 1.0276 30 1 -0.3633 0.8878 -0.5176 31 1 -0.3632 -0.8921 -0.5102 32 1 1.6583 2.1326 0.0004 33 1 4.1205 2.1326 -0.0092 34 1 5.3517 0.0000 0.0006 35 1 4.1206 -2.1323 0.0094 36 1 1.9914 -2.9292 2.0507 37 1 0.4124 -2.1270 1.8647 38 1 0.8850 -4.7811 3.4157 39 1 -0.5498 -3.7386 3.2649 40 1 -0.2965 -6.4245 4.7262 41 1 -1.8190 -5.5041 4.6726 42 1 -3.3780 -9.7228 6.0447 43 1 0.7643 -6.1749 0.8586 44 1 2.1981 -5.3073 1.4596 45 1 0.7403 -4.7826 -1.1713 46 1 2.3366 -5.5497 -0.9857 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131420964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:14 Heat of formation + Delta-G solvation = -13.972114 kcal Electronic energy + Delta-G solvation = -25853.293504 eV Core-core repulsion = 22320.798048 eV Total energy + Delta-G solvation = -3532.495456 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.28000 -39.84061 -38.45763 -36.57763 -35.35924 -34.32518 -33.57802 -33.04416 -30.60770 -29.75789 -27.89829 -27.22392 -25.13602 -24.36162 -23.25396 -22.83326 -21.72403 -21.21388 -18.93442 -18.33920 -17.83892 -17.37087 -17.04944 -16.49166 -16.20710 -16.03999 -15.82874 -15.40226 -15.30597 -15.04760 -14.84831 -14.68290 -14.46874 -14.26516 -13.97071 -13.83228 -13.68105 -13.31629 -13.18457 -13.12580 -12.99192 -12.80483 -12.72456 -12.54019 -12.35564 -11.96825 -11.83240 -11.78602 -11.71469 -11.67800 -11.39250 -11.21809 -10.74389 -10.69094 -9.67630 -9.50008 -9.35269 -8.24939 -6.30604 0.39910 0.51164 1.43298 1.43850 1.54862 2.04721 2.12259 2.40529 2.63772 2.75745 2.91928 3.11505 3.29530 3.77967 3.89090 3.94225 3.97144 4.02344 4.11991 4.15692 4.24807 4.27176 4.36081 4.46965 4.49743 4.56872 4.66114 4.67478 4.70084 4.76614 4.82997 4.86409 4.87833 4.93505 4.99031 5.00729 5.18426 5.22968 5.31067 5.41594 5.57414 5.62274 5.64881 5.71667 5.93272 5.96948 6.12620 6.22403 6.25864 6.76781 6.89639 7.33847 8.91907 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020628 B = 0.002862 C = 0.002814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.032054 B = 9782.171901 C = 9946.826445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.084 4.084 3 C -0.129 4.129 4 C -0.118 4.118 5 C -0.136 4.136 6 C -0.103 4.103 7 C -0.099 4.099 8 C 0.139 3.861 9 H 0.068 0.932 10 C 0.040 3.960 11 N -0.552 5.552 12 C 0.070 3.930 13 C 0.026 3.974 14 H 0.115 0.885 15 C 0.263 3.737 16 N -0.512 5.512 17 C -0.003 4.003 18 C -0.530 4.530 19 H 0.029 0.971 20 C 0.003 3.997 21 N -0.954 5.954 22 Si 0.947 3.053 23 H -0.276 1.276 24 H -0.290 1.290 25 H -0.224 1.224 26 C 0.010 3.990 27 C 0.065 3.935 28 O -0.389 6.389 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.061 0.939 32 H 0.142 0.858 33 H 0.145 0.855 34 H 0.139 0.861 35 H 0.124 0.876 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.092 0.908 44 H 0.056 0.944 45 H 0.050 0.950 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.316 21.200 -8.813 29.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.084 4.084 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.153 4.153 6 C -0.121 4.121 7 C -0.100 4.100 8 C 0.081 3.919 9 H 0.086 0.914 10 C -0.088 4.088 11 N -0.277 5.277 12 C -0.059 4.059 13 C 0.004 3.996 14 H 0.132 0.868 15 C -0.053 4.053 16 N -0.190 5.190 17 C -0.042 4.042 18 C -0.568 4.568 19 H 0.048 0.952 20 C -0.193 4.193 21 N -0.594 5.594 22 Si 0.770 3.230 23 H -0.202 1.202 24 H -0.216 1.216 25 H -0.146 1.146 26 C -0.118 4.118 27 C -0.011 4.011 28 O -0.308 6.308 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.080 0.920 32 H 0.159 0.841 33 H 0.163 0.837 34 H 0.157 0.843 35 H 0.142 0.858 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.110 0.890 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 16.557 21.525 -9.912 28.909 hybrid contribution 0.184 -0.848 1.393 1.641 sum 16.740 20.677 -8.519 27.935 Atomic orbital electron populations 1.20923 0.90509 1.03326 1.03008 1.19886 0.96670 0.92456 0.99438 1.21275 0.94753 0.97637 1.00996 1.21489 0.94385 0.98905 0.98798 1.21421 1.00971 0.92211 1.00741 1.21092 0.93521 0.98919 0.98560 1.19480 0.94307 0.92823 1.03360 1.20835 0.92395 0.85502 0.93184 0.91393 1.22631 0.98176 0.91372 0.96620 1.62162 1.41353 1.02819 1.21385 1.22153 0.98408 0.96180 0.89131 1.19063 0.85883 0.98819 0.95794 0.86780 1.29269 0.94119 0.90599 0.91334 1.80927 1.13228 1.12027 1.12778 1.19591 0.98172 0.94680 0.91732 1.21376 1.34852 1.07433 0.93111 0.95225 1.26028 0.94325 0.95050 1.03933 1.70084 1.39929 1.19919 1.29497 0.85718 0.80920 0.78373 0.78027 1.20213 1.21596 1.14592 1.22940 0.96157 0.96155 0.96507 1.22765 0.98664 0.84455 0.95240 1.87934 1.42961 1.17691 1.82186 0.90472 0.90063 0.92002 0.84070 0.83749 0.84273 0.85800 0.93431 0.89295 0.90338 0.89445 0.91857 0.95533 0.92658 0.89024 0.92537 0.93142 0.86100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.42 71.24 0.67 -1.27 16 2 C -0.08 -1.54 5.88 -19.86 -0.12 -1.66 16 3 C -0.13 -1.98 9.70 22.27 0.22 -1.76 16 4 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 5 C -0.14 -2.15 10.05 22.27 0.22 -1.93 16 6 C -0.10 -2.01 9.35 22.27 0.21 -1.80 16 7 C -0.10 -2.04 5.07 -19.86 -0.10 -2.14 16 8 C 0.14 3.02 2.52 29.88 0.08 3.09 16 9 H 0.07 1.60 6.16 -2.39 -0.01 1.59 16 10 C 0.04 0.85 4.91 86.31 0.42 1.27 16 11 N -0.55 -13.12 4.43 -895.21 -3.97 -17.08 16 12 C 0.07 1.72 4.32 86.30 0.37 2.09 16 13 C 0.03 0.87 2.13 -12.60 -0.03 0.84 16 14 H 0.11 3.60 6.29 -2.39 -0.02 3.58 16 15 C 0.26 10.59 13.66 89.46 1.22 11.81 16 16 N -0.51 -23.08 18.53 19.99 0.37 -22.71 16 17 C 0.00 -0.11 3.49 29.85 0.10 -0.01 16 18 C -0.53 -28.30 9.15 25.60 0.23 -28.06 16 19 H 0.03 1.79 7.84 -2.91 -0.02 1.77 16 20 C 0.00 0.19 5.47 84.66 0.46 0.65 16 21 N -0.95 -58.77 13.96 21.45 0.30 -58.47 16 22 Si 0.95 41.13 27.47 68.60 1.88 43.01 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.22 -8.23 6.54 99.48 0.65 -7.58 16 26 C 0.01 0.22 5.44 86.31 0.47 0.69 16 27 C 0.07 1.32 7.01 72.02 0.50 1.82 16 28 O -0.39 -8.85 9.31 -148.98 -1.39 -10.23 16 29 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 31 H 0.06 1.12 6.03 -2.39 -0.01 1.10 16 32 H 0.14 1.54 8.06 -2.91 -0.02 1.51 16 33 H 0.14 1.29 8.06 -2.91 -0.02 1.26 16 34 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 35 H 0.12 2.44 7.35 -2.91 -0.02 2.42 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.09 1.81 7.91 -2.38 -0.02 1.79 16 38 H 0.08 1.62 8.12 -2.39 -0.02 1.61 16 39 H 0.09 2.08 8.04 -2.39 -0.02 2.06 16 40 H 0.06 2.24 7.20 -2.39 -0.02 2.22 16 41 H 0.03 1.04 7.57 -2.39 -0.02 1.02 16 42 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 43 H 0.09 2.00 6.28 -2.39 -0.01 1.99 16 44 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 45 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -70.19 372.14 3.28 -66.91 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: 0.91 Total: 16.41 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 5.17 Total: -17.83 kcal Atomic # 7 Polarization: -94.97 SS G_CDS: -3.30 Total: -98.27 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -1.39 Total: -10.23 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 1.88 Total: 43.01 kcal Total: -70.19 3.28 -66.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131420964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.934 kcal (2) G-P(sol) polarization free energy of solvation -70.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds