Wall clock time and date at job start Tue Mar 31 2020 10:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 120.00066 * 2 1 4 4 C 1.38214 * 120.00090 * 180.23080 * 3 2 1 5 5 C 1.38258 * 120.00042 * 359.81073 * 4 3 2 6 6 C 1.38219 * 119.99769 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00356 * 179.80696 * 2 1 3 8 8 C 1.50703 * 119.99630 * 359.97438 * 7 2 1 9 9 H 1.08994 * 115.56752 * 334.03897 * 8 7 2 10 10 C 1.53001 * 117.49933 * 188.34460 * 8 7 2 11 11 C 1.52998 * 60.00270 * 252.51241 * 10 8 7 12 12 H 1.09007 * 117.49783 * 107.51001 * 11 10 8 13 13 C 1.50697 * 117.49766 * 252.51004 * 11 10 8 14 14 O 1.21284 * 120.00218 * 68.88756 * 13 11 10 15 15 N 1.34779 * 119.99957 * 248.60618 * 13 11 10 16 16 C 1.46967 * 120.59488 * 359.72160 * 15 13 11 17 17 C 1.53807 * 108.39607 * 124.75520 * 16 15 13 18 18 N 1.46970 * 108.57989 * 49.64235 * 17 16 15 19 19 C 1.36939 * 120.59243 * 124.66460 * 18 17 16 20 20 H 1.07990 * 120.00015 * 332.29891 * 19 18 17 21 21 C 1.38814 * 119.99427 * 152.29828 * 19 18 17 22 22 N 1.31622 * 119.99658 * 159.32586 * 21 19 18 23 23 Si 1.86801 * 120.00302 * 339.33055 * 21 19 18 24 24 H 1.48494 * 109.47314 * 93.67594 * 23 21 19 25 25 H 1.48501 * 109.46861 * 213.67599 * 23 21 19 26 26 H 1.48502 * 109.46922 * 333.67493 * 23 21 19 27 27 C 1.46961 * 118.80810 * 304.64127 * 18 17 16 28 28 C 1.46963 * 120.59328 * 180.02562 * 15 13 11 29 29 H 1.09001 * 109.47060 * 270.18980 * 1 2 3 30 30 H 1.09000 * 109.47320 * 30.18904 * 1 2 3 31 31 H 1.09001 * 109.46983 * 150.19071 * 1 2 3 32 32 H 1.08005 * 119.99866 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.00035 * 179.78247 * 4 3 2 34 34 H 1.07993 * 119.99855 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.99488 * 179.97438 * 6 5 4 36 36 H 1.09002 * 117.49666 * 145.02403 * 10 8 7 37 37 H 1.09005 * 117.50036 * 0.02562 * 10 8 7 38 38 H 1.08994 * 109.61014 * 244.54498 * 16 15 13 39 39 H 1.09005 * 109.60827 * 5.05435 * 16 15 13 40 40 H 1.09001 * 109.74296 * 289.85108 * 17 16 15 41 41 H 1.09000 * 109.53147 * 169.30678 * 17 16 15 42 42 H 0.97001 * 119.99911 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.61378 * 295.48472 * 27 18 17 44 44 H 1.09005 * 109.60798 * 174.96944 * 27 18 17 45 45 H 1.09000 * 109.61205 * 354.95132 * 28 15 13 46 46 H 1.09008 * 109.60669 * 115.45838 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1969 0.0040 8 6 1.4446 -2.5020 0.0090 9 1 0.4440 -2.4658 0.4397 10 6 2.2543 -3.7845 0.2103 11 6 1.6737 -3.4545 -1.1663 12 1 2.3695 -3.1375 -1.9432 13 6 0.4987 -4.2707 -1.6397 14 8 -0.5790 -4.1546 -1.0955 15 7 0.6440 -5.1256 -2.6715 16 6 1.9408 -5.2677 -3.3483 17 6 2.3430 -6.7519 -3.3201 18 7 1.2059 -7.5543 -3.7925 19 6 1.3536 -8.4229 -4.8409 20 1 2.1007 -8.2340 -5.5974 21 6 0.5428 -9.5460 -4.9310 22 7 0.3821 -10.1504 -6.0892 23 14 -0.3203 -10.1997 -3.4088 24 1 -1.6860 -9.6223 -3.3277 25 1 -0.4124 -11.6796 -3.4892 26 1 0.4516 -9.8167 -2.1993 27 6 -0.0923 -7.4082 -3.1193 28 6 -0.4933 -5.9275 -3.1442 29 1 -0.3633 0.0034 1.0277 30 1 -0.3634 0.8883 -0.5168 31 1 -0.3633 -0.8917 -0.5109 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1327 -0.0084 34 1 5.3516 0.0000 -0.0099 35 1 4.1207 -2.1323 -0.0023 36 1 1.7863 -4.5920 0.7734 37 1 3.3320 -3.6843 0.3395 38 1 1.8537 -4.9289 -4.3806 39 1 2.6920 -4.6736 -2.8279 40 1 2.5994 -7.0447 -2.3019 41 1 3.1995 -6.9099 -3.9754 42 1 -0.1847 -10.9350 -6.1523 43 1 -0.0093 -7.7476 -2.0869 44 1 -0.8441 -7.9994 -3.6422 45 1 -1.3499 -5.7693 -2.4891 46 1 -0.7493 -5.6346 -4.1625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000174345093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:31 Heat of formation + Delta-G solvation = 48.653274 kcal Electronic energy + Delta-G solvation = -26068.266113 eV Core-core repulsion = 22538.486298 eV Total energy + Delta-G solvation = -3529.779815 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.51848 -39.46197 -37.41946 -36.18921 -34.02419 -33.04214 -31.50869 -31.06309 -30.56717 -27.46533 -27.05530 -24.76615 -24.08927 -23.69209 -22.52307 -21.61876 -20.83274 -20.22074 -18.55880 -17.69462 -16.76175 -16.38953 -15.89698 -15.35526 -15.25434 -15.03060 -14.82176 -14.35675 -14.18751 -14.07777 -13.95802 -13.64354 -13.29385 -12.91619 -12.59397 -12.51844 -12.45321 -12.34631 -12.15049 -12.08017 -11.99256 -11.36346 -11.18572 -11.04579 -10.96952 -10.76440 -10.58409 -10.44720 -10.28808 -10.06386 -9.65284 -9.48681 -8.98247 -8.88889 -8.65874 -8.33236 -7.03000 -6.02767 -3.40250 1.07483 1.16693 2.64476 3.15763 3.27706 3.44471 3.46731 3.47734 3.92503 4.31890 4.45984 4.55360 4.65090 4.69244 4.72494 4.81343 4.82741 4.90715 5.05491 5.11885 5.24736 5.33729 5.42468 5.47994 5.49890 5.52708 5.53863 5.65931 5.70389 5.81253 5.82323 5.87625 5.91854 6.00067 6.01103 6.09965 6.19079 6.28783 6.30817 6.38169 6.47166 6.47939 6.65462 6.78969 6.86708 7.71498 7.85072 8.24320 8.39748 8.83028 9.62544 9.98855 11.12762 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.002924 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.720091 B = 9574.251159 C = 9973.206056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.124 4.124 6 C -0.116 4.116 7 C -0.051 4.051 8 C -0.087 4.087 9 H 0.127 0.873 10 C -0.144 4.144 11 C -0.172 4.172 12 H 0.125 0.875 13 C 0.539 3.461 14 O -0.554 6.554 15 N -0.594 5.594 16 C 0.088 3.912 17 C 0.135 3.865 18 N -0.605 5.605 19 C -0.265 4.265 20 H 0.088 0.912 21 C 0.026 3.974 22 N -0.905 5.905 23 Si 0.881 3.119 24 H -0.287 1.287 25 H -0.301 1.301 26 H -0.271 1.271 27 C 0.114 3.886 28 C 0.096 3.904 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.125 0.875 36 H 0.104 0.896 37 H 0.107 0.893 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.264 0.736 43 H 0.031 0.969 44 H 0.083 0.917 45 H 0.085 0.915 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.160 20.894 12.719 25.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.074 4.074 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.142 4.142 6 C -0.134 4.134 7 C -0.051 4.051 8 C -0.106 4.106 9 H 0.145 0.855 10 C -0.181 4.181 11 C -0.193 4.193 12 H 0.143 0.857 13 C 0.327 3.673 14 O -0.434 6.434 15 N -0.325 5.325 16 C -0.037 4.037 17 C 0.008 3.992 18 N -0.329 5.329 19 C -0.393 4.393 20 H 0.105 0.895 21 C -0.174 4.174 22 N -0.547 5.547 23 Si 0.711 3.289 24 H -0.215 1.215 25 H -0.229 1.229 26 H -0.196 1.196 27 C -0.012 4.012 28 C -0.028 4.028 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.142 0.858 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.047 0.953 41 H 0.094 0.906 42 H 0.074 0.926 43 H 0.049 0.951 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.531 20.766 12.859 25.044 hybrid contribution -0.381 -0.522 0.591 0.876 sum 5.150 20.244 13.450 24.844 Atomic orbital electron populations 1.20878 0.91040 1.03361 1.02494 1.19760 0.96252 0.92329 0.99038 1.21025 0.94281 0.97358 1.01185 1.21126 0.94299 0.98048 1.00521 1.21096 0.99810 0.92422 1.00894 1.21077 0.93544 0.98400 1.00354 1.19015 0.93021 0.92762 1.00347 1.21088 1.00813 0.87793 1.00885 0.85476 1.23115 1.00193 0.98688 0.96079 1.22353 1.00414 1.03060 0.93497 0.85676 1.19557 0.88501 0.79516 0.79684 1.90643 1.27860 1.67605 1.57257 1.47934 1.12300 1.40147 1.32140 1.22533 0.83935 0.99890 0.97334 1.21380 0.91307 0.88476 0.98010 1.44299 1.03706 1.47142 1.37759 1.18911 1.20810 1.00648 0.98922 0.89480 1.25285 0.98789 0.96736 0.96551 1.69831 1.39781 1.22252 1.22833 0.86982 0.79194 0.77493 0.85242 1.21457 1.22944 1.19586 1.21734 0.89506 0.93486 0.96464 1.22264 0.88374 0.92535 0.99636 0.91089 0.91632 0.90556 0.86105 0.86217 0.86096 0.85758 0.87743 0.87456 0.91135 0.90280 0.95332 0.90569 0.92630 0.95148 0.89898 0.89712 0.91138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.33 36.00 0.34 -0.79 16 2 C -0.07 -0.75 5.88 -104.63 -0.62 -1.37 16 3 C -0.12 -1.08 9.70 -39.58 -0.38 -1.47 16 4 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 5 C -0.12 -1.06 10.05 -39.58 -0.40 -1.45 16 6 C -0.12 -1.08 9.30 -39.58 -0.37 -1.45 16 7 C -0.05 -0.54 5.61 -104.63 -0.59 -1.13 16 8 C -0.09 -0.99 4.65 -91.77 -0.43 -1.42 16 9 H 0.13 1.61 6.45 -51.93 -0.33 1.27 16 10 C -0.14 -1.51 9.56 -26.73 -0.26 -1.76 16 11 C -0.17 -2.12 4.62 -91.77 -0.42 -2.54 16 12 H 0.13 1.37 6.77 -51.93 -0.35 1.02 16 13 C 0.54 8.80 7.48 -10.99 -0.08 8.72 16 14 O -0.55 -10.61 15.66 5.55 0.09 -10.52 16 15 N -0.59 -10.09 2.94 -172.19 -0.51 -10.60 16 16 C 0.09 1.32 6.50 -3.37 -0.02 1.30 16 17 C 0.14 2.46 6.69 -3.37 -0.02 2.44 16 18 N -0.61 -13.90 2.74 -171.74 -0.47 -14.37 16 19 C -0.26 -7.15 10.03 -15.06 -0.15 -7.30 16 20 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 21 C 0.03 0.73 5.23 -17.43 -0.09 0.64 16 22 N -0.90 -27.18 13.97 55.49 0.78 -26.40 16 23 Si 0.88 22.11 24.37 -169.99 -4.14 17.97 16 24 H -0.29 -6.97 6.64 56.52 0.38 -6.59 16 25 H -0.30 -7.71 7.11 56.52 0.40 -7.30 16 26 H -0.27 -6.75 6.63 56.52 0.38 -6.37 16 27 C 0.11 2.50 4.37 -3.58 -0.02 2.48 16 28 C 0.10 1.81 6.59 -3.57 -0.02 1.79 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.52 8.09 -51.93 -0.42 0.10 16 31 H 0.08 0.83 6.66 -51.93 -0.35 0.48 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 34 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.12 0.97 6.02 -52.48 -0.32 0.66 16 36 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.11 0.88 6.18 -51.93 -0.32 0.56 16 38 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.93 5.62 -51.93 -0.29 0.64 16 40 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.08 1.32 7.93 -51.93 -0.41 0.91 16 42 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.03 0.68 7.18 -51.93 -0.37 0.31 16 44 H 0.08 1.96 4.41 -51.93 -0.23 1.73 16 45 H 0.08 1.58 6.99 -51.93 -0.36 1.22 16 46 H 0.07 1.33 8.14 -51.92 -0.42 0.90 16 LS Contribution 359.25 15.07 5.41 5.41 Total: -1.00 -32.17 359.25 -9.52 -41.69 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -6.75 Total: 1.57 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -3.93 Total: -4.75 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.20 Total: -51.37 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: 0.09 Total: -10.52 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.14 Total: 17.97 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.17 -9.52 -41.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174345093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.342 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds