Wall clock time and date at job start Tue Mar 31 2020 10:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38256 * 120.00066 * 2 1 4 4 C 1.38214 * 120.00090 * 180.23080 * 3 2 1 5 5 C 1.38258 * 120.00042 * 359.81073 * 4 3 2 6 6 C 1.38219 * 119.99769 * 359.97438 * 5 4 3 7 7 C 1.38210 * 120.00356 * 179.80696 * 2 1 3 8 8 C 1.50703 * 119.99630 * 359.97438 * 7 2 1 9 9 H 1.08994 * 115.56752 * 334.03897 * 8 7 2 10 10 C 1.53001 * 117.49933 * 188.34460 * 8 7 2 11 11 C 1.52998 * 60.00270 * 252.51241 * 10 8 7 12 12 H 1.09007 * 117.49783 * 107.51001 * 11 10 8 13 13 C 1.50697 * 117.49766 * 252.51004 * 11 10 8 14 14 O 1.21284 * 120.00218 * 68.88756 * 13 11 10 15 15 N 1.34779 * 119.99957 * 248.60618 * 13 11 10 16 16 C 1.46967 * 120.59488 * 359.72160 * 15 13 11 17 17 C 1.53807 * 108.39607 * 124.75520 * 16 15 13 18 18 N 1.46970 * 108.57989 * 49.64235 * 17 16 15 19 19 C 1.36939 * 120.59243 * 124.66460 * 18 17 16 20 20 H 1.07990 * 120.00015 * 332.29891 * 19 18 17 21 21 C 1.38814 * 119.99427 * 152.29828 * 19 18 17 22 22 N 1.31622 * 119.99658 * 159.32586 * 21 19 18 23 23 Si 1.86801 * 120.00302 * 339.33055 * 21 19 18 24 24 H 1.48494 * 109.47314 * 93.67594 * 23 21 19 25 25 H 1.48501 * 109.46861 * 213.67599 * 23 21 19 26 26 H 1.48502 * 109.46922 * 333.67493 * 23 21 19 27 27 C 1.46961 * 118.80810 * 304.64127 * 18 17 16 28 28 C 1.46963 * 120.59328 * 180.02562 * 15 13 11 29 29 H 1.09001 * 109.47060 * 270.18980 * 1 2 3 30 30 H 1.09000 * 109.47320 * 30.18904 * 1 2 3 31 31 H 1.09001 * 109.46983 * 150.19071 * 1 2 3 32 32 H 1.08005 * 119.99866 * 0.02562 * 3 2 1 33 33 H 1.08003 * 120.00035 * 179.78247 * 4 3 2 34 34 H 1.07993 * 119.99855 * 179.97438 * 5 4 3 35 35 H 1.08004 * 119.99488 * 179.97438 * 6 5 4 36 36 H 1.09002 * 117.49666 * 145.02403 * 10 8 7 37 37 H 1.09005 * 117.50036 * 0.02562 * 10 8 7 38 38 H 1.08994 * 109.61014 * 244.54498 * 16 15 13 39 39 H 1.09005 * 109.60827 * 5.05435 * 16 15 13 40 40 H 1.09001 * 109.74296 * 289.85108 * 17 16 15 41 41 H 1.09000 * 109.53147 * 169.30678 * 17 16 15 42 42 H 0.97001 * 119.99911 * 180.02562 * 22 21 19 43 43 H 1.08998 * 109.61378 * 295.48472 * 27 18 17 44 44 H 1.09005 * 109.60798 * 174.96944 * 27 18 17 45 45 H 1.09000 * 109.61205 * 354.95132 * 28 15 13 46 46 H 1.09008 * 109.60669 * 115.45838 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 0.0000 -0.0057 6 6 3.5806 -1.1970 -0.0012 7 6 2.1981 -1.1969 0.0040 8 6 1.4446 -2.5020 0.0090 9 1 0.4440 -2.4658 0.4397 10 6 2.2543 -3.7845 0.2103 11 6 1.6737 -3.4545 -1.1663 12 1 2.3695 -3.1375 -1.9432 13 6 0.4987 -4.2707 -1.6397 14 8 -0.5790 -4.1546 -1.0955 15 7 0.6440 -5.1256 -2.6715 16 6 1.9408 -5.2677 -3.3483 17 6 2.3430 -6.7519 -3.3201 18 7 1.2059 -7.5543 -3.7925 19 6 1.3536 -8.4229 -4.8409 20 1 2.1007 -8.2340 -5.5974 21 6 0.5428 -9.5460 -4.9310 22 7 0.3821 -10.1504 -6.0892 23 14 -0.3203 -10.1997 -3.4088 24 1 -1.6860 -9.6223 -3.3277 25 1 -0.4124 -11.6796 -3.4892 26 1 0.4516 -9.8167 -2.1993 27 6 -0.0923 -7.4082 -3.1193 28 6 -0.4933 -5.9275 -3.1442 29 1 -0.3633 0.0034 1.0277 30 1 -0.3634 0.8883 -0.5168 31 1 -0.3633 -0.8917 -0.5109 32 1 1.6582 2.1327 0.0004 33 1 4.1204 2.1327 -0.0084 34 1 5.3516 0.0000 -0.0099 35 1 4.1207 -2.1323 -0.0023 36 1 1.7863 -4.5920 0.7734 37 1 3.3320 -3.6843 0.3395 38 1 1.8537 -4.9289 -4.3806 39 1 2.6920 -4.6736 -2.8279 40 1 2.5994 -7.0447 -2.3019 41 1 3.1995 -6.9099 -3.9754 42 1 -0.1847 -10.9350 -6.1523 43 1 -0.0093 -7.7476 -2.0869 44 1 -0.8441 -7.9994 -3.6422 45 1 -1.3499 -5.7693 -2.4891 46 1 -0.7493 -5.6346 -4.1625 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174345093.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:30 Heat of formation + Delta-G solvation = 30.693944 kcal Electronic energy + Delta-G solvation = -26069.044888 eV Core-core repulsion = 22538.486298 eV Total energy + Delta-G solvation = -3530.558590 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.57503 -40.42340 -38.82655 -37.23921 -35.70900 -33.71277 -33.48822 -32.42692 -31.42289 -29.07655 -27.78227 -26.09738 -25.35332 -24.86072 -23.96743 -22.30440 -22.26538 -21.09532 -19.92114 -18.98161 -18.28921 -17.41910 -17.18316 -16.91804 -16.29496 -16.21245 -16.02460 -15.73424 -15.50337 -15.21199 -14.94363 -14.67316 -14.61812 -14.21173 -14.08380 -13.91295 -13.60435 -13.56930 -13.16596 -13.04517 -12.84763 -12.79523 -12.53997 -12.32142 -12.05679 -11.97732 -11.89217 -11.82454 -11.61667 -11.57229 -11.39336 -10.97094 -10.75006 -9.91962 -9.63659 -9.36445 -8.89553 -8.20063 -5.52667 0.39256 0.52124 1.26666 1.38196 1.44265 1.46381 1.90825 2.37274 2.67608 3.01208 3.08516 3.27520 3.37492 3.67121 3.78557 3.91370 4.01723 4.04678 4.05755 4.14129 4.22094 4.24403 4.29917 4.38590 4.46950 4.53290 4.56481 4.65283 4.67637 4.75317 4.77066 4.80418 4.82583 4.90737 4.94291 4.99480 5.13709 5.15800 5.20814 5.32465 5.45485 5.63913 5.66953 5.78885 5.82008 6.09622 6.16099 6.43096 6.84322 7.10394 7.55704 7.96976 8.99277 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.002924 C = 0.002807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.720091 B = 9574.251159 C = 9973.206056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.093 4.093 3 C -0.129 4.129 4 C -0.125 4.125 5 C -0.129 4.129 6 C -0.120 4.120 7 C -0.068 4.068 8 C -0.084 4.084 9 H 0.107 0.893 10 C -0.128 4.128 11 C -0.178 4.178 12 H 0.147 0.853 13 C 0.537 3.463 14 O -0.588 6.588 15 N -0.599 5.599 16 C 0.097 3.903 17 C 0.129 3.871 18 N -0.619 5.619 19 C -0.247 4.247 20 H 0.064 0.936 21 C -0.029 4.029 22 N -0.951 5.951 23 Si 0.937 3.063 24 H -0.278 1.278 25 H -0.309 1.309 26 H -0.266 1.266 27 C 0.115 3.885 28 C 0.105 3.895 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.136 0.864 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.039 0.961 41 H 0.083 0.917 42 H 0.262 0.738 43 H 0.029 0.971 44 H 0.062 0.938 45 H 0.084 0.916 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.180 23.189 14.448 28.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.093 4.093 3 C -0.147 4.147 4 C -0.143 4.143 5 C -0.147 4.147 6 C -0.138 4.138 7 C -0.068 4.068 8 C -0.102 4.102 9 H 0.125 0.875 10 C -0.165 4.165 11 C -0.198 4.198 12 H 0.164 0.836 13 C 0.327 3.673 14 O -0.469 6.469 15 N -0.330 5.330 16 C -0.026 4.026 17 C 0.004 3.996 18 N -0.344 5.344 19 C -0.376 4.376 20 H 0.082 0.918 21 C -0.225 4.225 22 N -0.597 5.597 23 Si 0.767 3.233 24 H -0.205 1.205 25 H -0.238 1.238 26 H -0.191 1.191 27 C -0.011 4.011 28 C -0.020 4.020 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.154 0.846 33 H 0.160 0.840 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.113 0.887 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.141 0.859 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.047 0.953 44 H 0.080 0.920 45 H 0.103 0.897 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.575 23.106 14.624 28.375 hybrid contribution -0.955 -1.101 0.072 1.459 sum 6.620 22.005 14.696 27.277 Atomic orbital electron populations 1.20832 0.91163 1.02800 1.02635 1.19949 0.96489 0.93004 0.99833 1.21267 0.94935 0.97527 1.00970 1.21474 0.94180 0.99193 0.99431 1.21431 1.01076 0.92116 1.00033 1.21297 0.92978 0.99596 0.99939 1.19039 0.93721 0.92192 1.01824 1.20971 1.00384 0.88834 1.00048 0.87516 1.23248 1.01716 0.97627 0.93864 1.22320 0.99396 1.03379 0.94746 0.83590 1.20246 0.89253 0.79102 0.78681 1.90629 1.29639 1.68552 1.58126 1.48021 1.12284 1.40123 1.32606 1.22537 0.84018 0.98085 0.97999 1.21625 0.90006 0.89611 0.98386 1.44439 1.05625 1.47068 1.37246 1.18898 1.18933 1.00637 0.99134 0.91836 1.25832 1.00544 0.97544 0.98540 1.69944 1.41897 1.23239 1.24640 0.86050 0.78812 0.76197 0.82233 1.20521 1.23794 1.19083 1.21654 0.88630 0.95170 0.95643 1.21955 0.89355 0.90970 0.99693 0.90677 0.90548 0.92651 0.84649 0.84025 0.83853 0.84092 0.88675 0.84408 0.91138 0.85939 0.94311 0.89866 0.92882 0.95330 0.91992 0.89729 0.91382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 9.33 71.23 0.66 -1.47 16 2 C -0.09 -1.76 5.88 -19.87 -0.12 -1.87 16 3 C -0.13 -2.03 9.70 22.27 0.22 -1.81 16 4 C -0.12 -1.69 10.05 22.27 0.22 -1.47 16 5 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 6 C -0.12 -1.84 9.30 22.27 0.21 -1.63 16 7 C -0.07 -1.29 5.61 -19.87 -0.11 -1.40 16 8 C -0.08 -1.77 4.65 -11.54 -0.05 -1.82 16 9 H 0.11 2.69 6.45 -2.39 -0.02 2.68 16 10 C -0.13 -2.29 9.56 30.59 0.29 -2.00 16 11 C -0.18 -3.89 4.62 -11.54 -0.05 -3.94 16 12 H 0.15 2.57 6.77 -2.38 -0.02 2.56 16 13 C 0.54 16.68 7.48 87.66 0.66 17.34 16 14 O -0.59 -22.32 15.66 -3.04 -0.05 -22.37 16 15 N -0.60 -19.29 2.94 -817.06 -2.40 -21.69 16 16 C 0.10 2.64 6.50 86.56 0.56 3.21 16 17 C 0.13 4.41 6.69 86.56 0.58 4.99 16 18 N -0.62 -27.95 2.74 -697.26 -1.91 -29.86 16 19 C -0.25 -13.42 10.03 84.03 0.84 -12.57 16 20 H 0.06 3.70 8.06 -2.92 -0.02 3.68 16 21 C -0.03 -1.68 5.23 84.86 0.44 -1.23 16 22 N -0.95 -58.66 13.97 21.65 0.30 -58.36 16 23 Si 0.94 46.40 24.37 68.60 1.67 48.07 16 24 H -0.28 -13.21 6.64 99.48 0.66 -12.54 16 25 H -0.31 -15.56 7.11 99.48 0.71 -14.85 16 26 H -0.27 -12.79 6.63 99.48 0.66 -12.13 16 27 C 0.12 4.96 4.37 86.43 0.38 5.34 16 28 C 0.10 3.90 6.59 86.43 0.57 4.47 16 29 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.08 1.16 8.09 -2.39 -0.02 1.14 16 31 H 0.05 1.22 6.66 -2.39 -0.02 1.21 16 32 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 33 H 0.14 1.23 8.06 -2.91 -0.02 1.20 16 34 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.14 1.57 6.02 -2.91 -0.02 1.55 16 36 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.14 1.63 6.18 -2.38 -0.01 1.61 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.12 2.31 5.62 -2.38 -0.01 2.30 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 2.72 7.93 -2.39 -0.02 2.70 16 42 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.03 1.25 7.18 -2.39 -0.02 1.23 16 44 H 0.06 2.92 4.41 -2.38 -0.01 2.91 16 45 H 0.08 3.15 6.99 -2.39 -0.02 3.13 16 46 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 Total: -1.00 -70.93 359.25 4.03 -66.91 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: 0.89 Total: 14.68 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.52 Total: 2.62 kcal Atomic # 7 Polarization: -105.90 SS G_CDS: -4.01 Total: -109.91 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -0.05 Total: -22.37 kcal Atomic # 14 Polarization: 46.40 SS G_CDS: 1.67 Total: 48.07 kcal Total: -70.93 4.03 -66.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174345093.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.600 kcal (2) G-P(sol) polarization free energy of solvation -70.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds