Wall clock time and date at job start Tue Mar 31 2020 11:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47103 * 120.00119 * 2 1 4 4 O 1.21613 * 119.99745 * 280.67206 * 3 2 1 5 5 N 1.34775 * 119.99561 * 100.66563 * 3 2 1 6 6 C 1.46500 * 120.00532 * 355.44348 * 5 3 2 7 7 C 1.50695 * 109.47094 * 275.45134 * 6 5 3 8 8 H 1.08001 * 120.00009 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99807 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99808 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99964 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46948 * 90.00133 * 11 9 7 13 13 H 1.48501 * 109.46837 * 209.99944 * 11 9 7 14 14 H 1.48496 * 109.47324 * 329.99851 * 11 9 7 15 15 C 1.46501 * 119.99798 * 175.44391 * 5 3 2 16 16 C 1.50704 * 109.47258 * 89.99883 * 15 5 3 17 17 C 1.38225 * 119.61550 * 94.98033 * 16 15 5 18 18 C 1.38632 * 119.15973 * 179.79491 * 17 16 15 19 19 C 1.38672 * 118.41605 * 0.46486 * 18 17 16 20 20 C 1.38172 * 119.16792 * 359.51589 * 19 18 17 21 21 N 1.31848 * 119.61835 * 275.00052 * 16 15 5 22 22 C 1.32996 * 120.00312 * 180.02562 * 2 1 3 23 23 C 1.51441 * 126.34291 * 179.68939 * 22 2 1 24 24 C 1.54281 * 106.85413 * 180.23857 * 23 22 2 25 25 C 1.54983 * 103.65890 * 23.48093 * 24 23 22 26 26 C 1.51844 * 126.33866 * 359.97438 * 22 2 1 27 27 H 1.09005 * 109.47173 * 85.74883 * 1 2 3 28 28 H 1.09000 * 109.46797 * 205.74217 * 1 2 3 29 29 H 1.08996 * 109.47154 * 325.74336 * 1 2 3 30 30 H 1.08999 * 109.46515 * 35.45015 * 6 5 3 31 31 H 1.08994 * 109.47219 * 155.44357 * 6 5 3 32 32 H 0.97000 * 119.99735 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47012 * 330.00109 * 15 5 3 34 34 H 1.08996 * 109.47549 * 210.00313 * 15 5 3 35 35 H 1.08007 * 120.42089 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.78754 * 180.23399 * 18 17 16 37 37 H 1.08008 * 120.41325 * 179.78095 * 19 18 17 38 38 H 1.07994 * 119.62062 * 180.25234 * 20 19 18 39 39 H 1.09001 * 109.98644 * 299.72129 * 23 22 2 40 40 H 1.08997 * 109.98505 * 61.02790 * 23 22 2 41 41 H 1.09008 * 110.79151 * 264.86008 * 24 23 22 42 42 H 1.08991 * 110.43429 * 141.93429 * 24 23 22 43 43 H 1.09002 * 110.83524 * 204.49985 * 25 24 23 44 44 H 1.08995 * 110.83515 * 80.91202 * 25 24 23 45 45 H 1.09001 * 110.44520 * 274.93073 * 26 22 2 46 46 H 1.09000 * 110.44207 * 37.33058 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3776 1.8980 -1.0350 5 7 2.7665 1.7494 1.1471 6 6 2.5192 1.0504 2.4106 7 6 1.2005 1.5008 2.9841 8 1 0.6062 2.2347 2.4601 9 6 0.7527 0.9759 4.1778 10 7 -0.3985 1.3686 4.6781 11 14 1.7803 -0.2940 5.0838 12 1 2.7056 0.3943 6.0194 13 1 0.8862 -1.1998 5.8488 14 1 2.5659 -1.0858 4.1035 15 6 3.5834 2.9654 1.1304 16 6 2.6980 4.1683 1.3314 17 6 2.5320 4.6899 2.6006 18 6 1.7188 5.7992 2.7741 19 6 1.0924 6.3387 1.6607 20 6 1.3060 5.7632 0.4229 21 7 2.0903 4.7105 0.2946 22 6 2.1720 -1.1517 -0.0005 23 6 3.6771 -1.3190 -0.0072 24 6 3.9587 -2.8359 -0.0112 25 6 2.6648 -3.4466 -0.6070 26 6 1.5627 -2.5426 -0.0006 27 1 -0.3634 0.0762 -1.0249 28 1 -0.3633 -0.9257 0.4463 29 1 -0.3633 0.8494 0.5785 30 1 2.4894 -0.0243 2.2313 31 1 3.3190 1.2791 3.1149 32 1 -0.7134 0.9996 5.5181 33 1 4.0945 3.0467 0.1711 34 1 4.3206 2.9190 1.9320 35 1 3.0326 4.2413 3.4461 36 1 1.5736 6.2305 3.7535 37 1 0.4490 7.2006 1.7594 38 1 0.8250 6.1799 -0.4497 39 1 4.0993 -0.8574 -0.8998 40 1 4.1064 -0.8650 0.8859 41 1 4.1233 -3.2016 1.0024 42 1 4.8160 -3.0621 -0.6450 43 1 2.5394 -4.4801 -0.2838 44 1 2.6685 -3.3772 -1.6947 45 1 1.3299 -2.8563 1.0170 46 1 0.6658 -2.5652 -0.6196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176617438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:03 Heat of formation + Delta-G solvation = 6.002007 kcal Electronic energy + Delta-G solvation = -27236.145678 eV Core-core repulsion = 23704.516365 eV Total energy + Delta-G solvation = -3531.629313 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.91064 -39.10868 -37.51677 -35.08972 -33.13778 -32.54856 -31.90169 -31.13369 -28.79016 -28.14827 -27.18991 -26.32908 -23.66391 -23.02505 -22.34405 -21.65062 -20.52278 -19.48903 -17.14452 -17.07729 -16.37027 -16.06499 -15.79023 -15.55773 -15.29812 -15.08203 -14.59281 -13.99091 -13.56056 -13.36006 -13.14734 -12.96100 -12.78435 -12.71935 -12.47888 -12.38980 -12.05752 -11.88961 -11.76249 -11.60320 -11.42512 -11.25190 -10.99524 -10.94002 -10.79677 -10.66086 -10.61428 -10.50785 -10.26317 -9.59854 -9.34862 -9.05440 -8.89968 -8.70945 -8.46145 -8.10413 -7.73290 -6.17790 -4.17029 1.58193 1.83406 2.36713 3.16027 3.25133 3.26589 3.39135 3.90906 4.28307 4.46713 4.70809 4.80127 4.88974 5.12092 5.14065 5.20698 5.27313 5.34597 5.45495 5.52445 5.60111 5.62817 5.75657 5.77483 5.87755 5.94737 5.97127 5.98050 6.12590 6.15993 6.17805 6.23040 6.24137 6.30054 6.36910 6.42007 6.43395 6.58899 6.62094 6.67791 6.71859 6.90885 7.19183 7.25122 7.37381 7.47916 8.15695 8.43173 8.57708 8.88141 9.00104 9.42243 10.94857 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.006047 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.617927 B = 4629.152501 C = 6048.534341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.113 4.113 3 C 0.567 3.433 4 O -0.544 6.544 5 N -0.584 5.584 6 C 0.207 3.793 7 C -0.524 4.524 8 H 0.076 0.924 9 C 0.078 3.922 10 N -0.892 5.892 11 Si 0.864 3.136 12 H -0.276 1.276 13 H -0.285 1.285 14 H -0.263 1.263 15 C 0.170 3.830 16 C 0.121 3.879 17 C -0.132 4.132 18 C -0.079 4.079 19 C -0.179 4.179 20 C 0.088 3.912 21 N -0.459 5.459 22 C -0.115 4.115 23 C -0.096 4.096 24 C -0.121 4.121 25 C -0.122 4.122 26 C -0.088 4.088 27 H 0.060 0.940 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.040 0.960 31 H 0.026 0.974 32 H 0.264 0.736 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.132 0.868 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.146 0.854 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.615 -1.640 -4.850 8.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C 0.355 3.645 4 O -0.422 6.422 5 N -0.315 5.315 6 C 0.086 3.914 7 C -0.562 4.562 8 H 0.094 0.906 9 C -0.125 4.125 10 N -0.530 5.530 11 Si 0.691 3.309 12 H -0.201 1.201 13 H -0.210 1.210 14 H -0.187 1.187 15 C 0.046 3.954 16 C -0.018 4.018 17 C -0.152 4.152 18 C -0.105 4.105 19 C -0.199 4.199 20 C -0.070 4.070 21 N -0.168 5.168 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.159 4.159 25 C -0.159 4.159 26 C -0.125 4.125 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.058 0.942 31 H 0.043 0.957 32 H 0.074 0.926 33 H 0.107 0.893 34 H 0.104 0.896 35 H 0.150 0.850 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.164 0.836 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.712 -1.726 -6.050 9.200 hybrid contribution -0.035 -0.177 1.885 1.893 sum 6.677 -1.904 -4.166 8.097 Atomic orbital electron populations 1.20552 0.89850 1.03651 1.01162 1.20645 0.96601 0.91608 1.02771 1.18307 0.77945 0.85053 0.83213 1.90760 1.59470 1.59674 1.32288 1.47891 1.50408 1.24550 1.08656 1.19878 0.97460 0.93256 0.80806 1.21287 1.03177 1.25346 1.06417 0.90586 1.24813 0.94746 0.96045 0.96913 1.69894 1.19687 1.43362 1.20033 0.87035 0.80786 0.82494 0.80620 1.20146 1.21036 1.18732 1.20136 0.90949 0.81271 1.03021 1.21551 0.96022 0.95309 0.88903 1.21909 0.99354 0.95876 0.98082 1.21469 0.94937 0.95361 0.98721 1.22025 1.01627 1.01985 0.94248 1.22625 0.95415 0.92334 0.96625 1.67548 1.06675 1.08550 1.34054 1.22123 0.95153 0.93504 1.00808 1.21182 0.93433 0.96479 1.02171 1.22332 0.97587 0.95052 1.00899 1.22486 0.94910 0.98406 1.00117 1.21372 0.97921 0.91859 1.01333 0.92101 0.91559 0.90436 0.94227 0.95651 0.92599 0.89279 0.89588 0.84976 0.85421 0.85634 0.83627 0.91114 0.90848 0.91495 0.91751 0.91579 0.91462 0.90251 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.80 9.66 36.00 0.35 -1.46 16 2 C -0.11 -2.24 4.36 -102.85 -0.45 -2.69 16 3 C 0.57 12.31 6.39 -12.66 -0.08 12.23 16 4 O -0.54 -13.07 16.73 5.27 0.09 -12.98 16 5 N -0.58 -12.13 2.45 -177.83 -0.44 -12.56 16 6 C 0.21 4.52 4.07 -5.20 -0.02 4.50 16 7 C -0.52 -13.42 9.88 -34.44 -0.34 -13.76 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.83 16 9 C 0.08 2.05 5.47 -17.82 -0.10 1.95 16 10 N -0.89 -25.44 13.96 55.43 0.77 -24.67 16 11 Si 0.86 19.56 27.47 -169.99 -4.67 14.89 16 12 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.26 -5.64 6.54 56.52 0.37 -5.27 16 15 C 0.17 3.16 5.72 -5.19 -0.03 3.13 16 16 C 0.12 2.36 6.36 -82.59 -0.53 1.84 16 17 C -0.13 -2.38 9.72 -39.44 -0.38 -2.76 16 18 C -0.08 -1.29 10.18 -39.28 -0.40 -1.69 16 19 C -0.18 -2.78 10.11 -39.45 -0.40 -3.18 16 20 C 0.09 1.51 11.18 -17.55 -0.20 1.31 16 21 N -0.46 -9.31 10.27 -9.48 -0.10 -9.40 16 22 C -0.11 -1.96 5.14 -100.24 -0.51 -2.48 16 23 C -0.10 -1.46 5.86 -26.85 -0.16 -1.62 16 24 C -0.12 -1.49 6.88 -25.01 -0.17 -1.66 16 25 C -0.12 -1.43 6.94 -24.68 -0.17 -1.60 16 26 C -0.09 -1.24 5.64 -26.31 -0.15 -1.39 16 27 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 28 H 0.07 1.14 7.00 -51.93 -0.36 0.78 16 29 H 0.08 1.69 8.13 -51.93 -0.42 1.27 16 30 H 0.04 0.87 4.81 -51.93 -0.25 0.63 16 31 H 0.03 0.53 7.26 -51.93 -0.38 0.15 16 32 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 33 H 0.09 1.65 7.49 -51.93 -0.39 1.26 16 34 H 0.09 1.33 7.76 -51.93 -0.40 0.93 16 35 H 0.13 2.25 8.06 -52.48 -0.42 1.82 16 36 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.13 1.54 8.06 -52.48 -0.42 1.12 16 38 H 0.15 2.09 8.06 -52.49 -0.42 1.67 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.07 1.17 7.66 -51.93 -0.40 0.78 16 41 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 0.94 7.60 -51.93 -0.39 0.55 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -31.74 378.50 -9.61 -41.35 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -7.24 Total: 6.98 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -3.74 Total: -9.31 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: 0.24 Total: -46.64 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.09 Total: -12.98 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.67 Total: 14.89 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.74 -9.61 -41.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176617438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.354 kcal (2) G-P(sol) polarization free energy of solvation -31.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds