Wall clock time and date at job start Tue Mar 31 2020 11:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.47103 * 120.00119 * 2 1 4 4 O 1.21613 * 119.99745 * 280.67206 * 3 2 1 5 5 N 1.34775 * 119.99561 * 100.66563 * 3 2 1 6 6 C 1.46500 * 120.00532 * 355.44348 * 5 3 2 7 7 C 1.50695 * 109.47094 * 275.45134 * 6 5 3 8 8 H 1.08001 * 120.00009 * 359.97438 * 7 6 5 9 9 C 1.37879 * 119.99807 * 179.97438 * 7 6 5 10 10 N 1.31515 * 119.99808 * 180.02562 * 9 7 6 11 11 Si 1.86800 * 119.99964 * 359.97438 * 9 7 6 12 12 H 1.48500 * 109.46948 * 90.00133 * 11 9 7 13 13 H 1.48501 * 109.46837 * 209.99944 * 11 9 7 14 14 H 1.48496 * 109.47324 * 329.99851 * 11 9 7 15 15 C 1.46501 * 119.99798 * 175.44391 * 5 3 2 16 16 C 1.50704 * 109.47258 * 89.99883 * 15 5 3 17 17 C 1.38225 * 119.61550 * 94.98033 * 16 15 5 18 18 C 1.38632 * 119.15973 * 179.79491 * 17 16 15 19 19 C 1.38672 * 118.41605 * 0.46486 * 18 17 16 20 20 C 1.38172 * 119.16792 * 359.51589 * 19 18 17 21 21 N 1.31848 * 119.61835 * 275.00052 * 16 15 5 22 22 C 1.32996 * 120.00312 * 180.02562 * 2 1 3 23 23 C 1.51441 * 126.34291 * 179.68939 * 22 2 1 24 24 C 1.54281 * 106.85413 * 180.23857 * 23 22 2 25 25 C 1.54983 * 103.65890 * 23.48093 * 24 23 22 26 26 C 1.51844 * 126.33866 * 359.97438 * 22 2 1 27 27 H 1.09005 * 109.47173 * 85.74883 * 1 2 3 28 28 H 1.09000 * 109.46797 * 205.74217 * 1 2 3 29 29 H 1.08996 * 109.47154 * 325.74336 * 1 2 3 30 30 H 1.08999 * 109.46515 * 35.45015 * 6 5 3 31 31 H 1.08994 * 109.47219 * 155.44357 * 6 5 3 32 32 H 0.97000 * 119.99735 * 180.02562 * 10 9 7 33 33 H 1.09005 * 109.47012 * 330.00109 * 15 5 3 34 34 H 1.08996 * 109.47549 * 210.00313 * 15 5 3 35 35 H 1.08007 * 120.42089 * 0.02562 * 17 16 15 36 36 H 1.08002 * 120.78754 * 180.23399 * 18 17 16 37 37 H 1.08008 * 120.41325 * 179.78095 * 19 18 17 38 38 H 1.07994 * 119.62062 * 180.25234 * 20 19 18 39 39 H 1.09001 * 109.98644 * 299.72129 * 23 22 2 40 40 H 1.08997 * 109.98505 * 61.02790 * 23 22 2 41 41 H 1.09008 * 110.79151 * 264.86008 * 24 23 22 42 42 H 1.08991 * 110.43429 * 141.93429 * 24 23 22 43 43 H 1.09002 * 110.83524 * 204.49985 * 25 24 23 44 44 H 1.08995 * 110.83515 * 80.91202 * 25 24 23 45 45 H 1.09001 * 110.44520 * 274.93073 * 26 22 2 46 46 H 1.09000 * 110.44207 * 37.33058 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3776 1.8980 -1.0350 5 7 2.7665 1.7494 1.1471 6 6 2.5192 1.0504 2.4106 7 6 1.2005 1.5008 2.9841 8 1 0.6062 2.2347 2.4601 9 6 0.7527 0.9759 4.1778 10 7 -0.3985 1.3686 4.6781 11 14 1.7803 -0.2940 5.0838 12 1 2.7056 0.3943 6.0194 13 1 0.8862 -1.1998 5.8488 14 1 2.5659 -1.0858 4.1035 15 6 3.5834 2.9654 1.1304 16 6 2.6980 4.1683 1.3314 17 6 2.5320 4.6899 2.6006 18 6 1.7188 5.7992 2.7741 19 6 1.0924 6.3387 1.6607 20 6 1.3060 5.7632 0.4229 21 7 2.0903 4.7105 0.2946 22 6 2.1720 -1.1517 -0.0005 23 6 3.6771 -1.3190 -0.0072 24 6 3.9587 -2.8359 -0.0112 25 6 2.6648 -3.4466 -0.6070 26 6 1.5627 -2.5426 -0.0006 27 1 -0.3634 0.0762 -1.0249 28 1 -0.3633 -0.9257 0.4463 29 1 -0.3633 0.8494 0.5785 30 1 2.4894 -0.0243 2.2313 31 1 3.3190 1.2791 3.1149 32 1 -0.7134 0.9996 5.5181 33 1 4.0945 3.0467 0.1711 34 1 4.3206 2.9190 1.9320 35 1 3.0326 4.2413 3.4461 36 1 1.5736 6.2305 3.7535 37 1 0.4490 7.2006 1.7594 38 1 0.8250 6.1799 -0.4497 39 1 4.0993 -0.8574 -0.8998 40 1 4.1064 -0.8650 0.8859 41 1 4.1233 -3.2016 1.0024 42 1 4.8160 -3.0621 -0.6450 43 1 2.5394 -4.4801 -0.2838 44 1 2.6685 -3.3772 -1.6947 45 1 1.3299 -2.8563 1.0170 46 1 0.6658 -2.5652 -0.6196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000176617438.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:33:02 Heat of formation + Delta-G solvation = -11.519099 kcal Electronic energy + Delta-G solvation = -27236.905450 eV Core-core repulsion = 23704.516365 eV Total energy + Delta-G solvation = -3532.389085 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.39412 -40.56157 -38.78713 -36.81055 -34.68911 -34.30582 -33.29854 -32.59736 -29.97448 -29.93031 -28.45549 -27.83636 -25.16493 -24.46205 -24.05404 -23.03775 -21.58134 -20.90661 -19.03851 -18.71174 -17.81699 -17.48736 -17.25811 -16.90820 -16.62344 -16.43717 -16.17693 -15.67578 -15.09487 -14.78289 -14.60410 -14.26439 -14.20811 -14.10843 -14.04858 -13.85258 -13.66751 -13.36281 -13.27913 -13.09455 -12.81483 -12.63188 -12.59334 -12.31645 -12.08286 -12.02545 -11.93931 -11.83168 -11.63386 -11.44306 -10.78489 -10.71856 -10.64390 -10.33024 -9.87410 -9.54992 -9.40351 -8.21693 -6.25587 0.21561 0.47313 0.94146 1.39252 1.42365 1.50819 1.72845 2.36999 2.38524 3.04846 3.12427 3.43060 3.50879 3.78562 3.84563 3.95755 4.04424 4.17752 4.23286 4.25611 4.31162 4.43449 4.48899 4.50770 4.55988 4.69410 4.72893 4.75712 4.79380 4.83832 4.87058 4.90748 4.93632 4.99232 5.05904 5.14248 5.16795 5.22154 5.26980 5.33374 5.45390 5.50537 5.53365 5.69901 5.84661 5.87218 6.26625 6.59477 6.77527 7.19046 7.28840 7.40531 8.94519 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011409 B = 0.006047 C = 0.004628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2453.617927 B = 4629.152501 C = 6048.534341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.161 4.161 3 C 0.563 3.437 4 O -0.577 6.577 5 N -0.583 5.583 6 C 0.218 3.782 7 C -0.509 4.509 8 H 0.022 0.978 9 C 0.024 3.976 10 N -0.942 5.942 11 Si 0.929 3.071 12 H -0.264 1.264 13 H -0.289 1.289 14 H -0.239 1.239 15 C 0.165 3.835 16 C 0.099 3.901 17 C -0.146 4.146 18 C -0.087 4.087 19 C -0.170 4.170 20 C 0.071 3.929 21 N -0.498 5.498 22 C -0.096 4.096 23 C -0.102 4.102 24 C -0.115 4.115 25 C -0.114 4.114 26 C -0.094 4.094 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.046 0.954 32 H 0.264 0.736 33 H 0.082 0.918 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.202 -3.561 -4.156 9.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.164 4.164 3 C 0.353 3.647 4 O -0.458 6.458 5 N -0.313 5.313 6 C 0.096 3.904 7 C -0.548 4.548 8 H 0.040 0.960 9 C -0.174 4.174 10 N -0.582 5.582 11 Si 0.752 3.248 12 H -0.189 1.189 13 H -0.215 1.215 14 H -0.162 1.162 15 C 0.041 3.959 16 C -0.040 4.040 17 C -0.167 4.167 18 C -0.113 4.113 19 C -0.190 4.190 20 C -0.087 4.087 21 N -0.208 5.208 22 C -0.097 4.097 23 C -0.139 4.139 24 C -0.153 4.153 25 C -0.151 4.151 26 C -0.131 4.131 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.134 0.866 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.181 0.819 38 H 0.186 0.814 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.103 0.897 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.328 -3.641 -5.363 10.553 hybrid contribution -0.588 0.522 1.605 1.788 sum 7.739 -3.119 -3.758 9.151 Atomic orbital electron populations 1.20411 0.90041 1.02419 1.01147 1.20618 0.96643 0.91751 1.07384 1.18710 0.77508 0.85584 0.82909 1.90716 1.60792 1.60944 1.33371 1.47911 1.50293 1.25069 1.08036 1.19701 0.95881 0.93417 0.81352 1.21222 1.03991 1.23681 1.05865 0.95981 1.25611 0.95794 0.98224 0.97781 1.70059 1.21996 1.45396 1.20755 0.85988 0.79268 0.79834 0.79676 1.18885 1.21528 1.16196 1.20359 0.91161 0.80469 1.03869 1.21672 0.96866 0.95968 0.89471 1.22082 1.00119 0.96751 0.97714 1.21896 0.94210 0.94842 1.00315 1.22420 1.00985 1.02446 0.93162 1.23133 0.95149 0.91909 0.98465 1.67512 1.08068 1.10066 1.35118 1.22632 0.96609 0.94058 0.96369 1.21306 0.91902 0.99123 1.01564 1.22348 0.98662 0.92227 1.02014 1.22497 0.93199 0.99065 1.00365 1.21532 0.99179 0.90318 1.02024 0.91140 0.90007 0.94697 0.93739 0.93560 0.92686 0.89939 0.86558 0.84371 0.82783 0.81870 0.81450 0.91657 0.91494 0.90670 0.89739 0.89076 0.90869 0.89866 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -3.27 9.66 71.23 0.69 -2.58 16 2 C -0.16 -6.45 4.36 -18.70 -0.08 -6.54 16 3 C 0.56 25.28 6.39 86.57 0.55 25.83 16 4 O -0.58 -29.00 16.73 -4.07 -0.07 -29.07 16 5 N -0.58 -24.64 2.45 -834.80 -2.05 -26.68 16 6 C 0.22 9.40 4.07 85.63 0.35 9.75 16 7 C -0.51 -26.65 9.88 25.60 0.25 -26.39 16 8 H 0.02 1.38 8.06 -2.91 -0.02 1.35 16 9 C 0.02 1.28 5.47 84.65 0.46 1.75 16 10 N -0.94 -55.06 13.96 21.45 0.30 -54.76 16 11 Si 0.93 39.27 27.47 68.60 1.88 41.16 16 12 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 13 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 14 H -0.24 -9.09 6.54 99.48 0.65 -8.44 16 15 C 0.16 6.23 5.72 85.63 0.49 6.72 16 16 C 0.10 3.96 6.36 42.55 0.27 4.23 16 17 C -0.15 -5.34 9.72 22.36 0.22 -5.12 16 18 C -0.09 -2.79 10.18 22.47 0.23 -2.56 16 19 C -0.17 -5.15 10.11 22.36 0.23 -4.92 16 20 C 0.07 2.46 11.18 84.67 0.95 3.41 16 21 N -0.50 -20.94 10.27 -183.89 -1.89 -22.83 16 22 C -0.10 -3.15 5.14 -17.01 -0.09 -3.24 16 23 C -0.10 -2.91 5.86 30.52 0.18 -2.73 16 24 C -0.12 -2.38 6.88 31.71 0.22 -2.17 16 25 C -0.11 -2.22 6.94 31.93 0.22 -2.00 16 26 C -0.09 -2.39 5.64 30.87 0.17 -2.22 16 27 H 0.07 2.52 8.14 -2.38 -0.02 2.50 16 28 H 0.08 2.84 7.00 -2.39 -0.02 2.83 16 29 H 0.03 1.62 8.13 -2.39 -0.02 1.60 16 30 H 0.04 1.90 4.81 -2.39 -0.01 1.88 16 31 H 0.05 1.83 7.26 -2.39 -0.02 1.81 16 32 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.08 3.18 7.49 -2.38 -0.02 3.16 16 34 H 0.12 3.53 7.76 -2.39 -0.02 3.51 16 35 H 0.14 4.70 8.06 -2.91 -0.02 4.68 16 36 H 0.15 4.02 8.06 -2.91 -0.02 4.00 16 37 H 0.16 3.60 8.06 -2.91 -0.02 3.57 16 38 H 0.17 4.82 8.06 -2.91 -0.02 4.80 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.01 7.66 -2.39 -0.02 1.99 16 41 H 0.07 1.47 8.14 -2.38 -0.02 1.45 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.08 1.90 7.60 -2.39 -0.02 1.89 16 Total: -1.00 -72.50 378.50 4.39 -68.11 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.90 Total: 32.86 kcal Atomic # 6 Polarization: -14.09 SS G_CDS: 5.31 Total: -8.78 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.64 Total: -104.28 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.07 Total: -29.07 kcal Atomic # 14 Polarization: 39.27 SS G_CDS: 1.88 Total: 41.16 kcal Total: -72.50 4.39 -68.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176617438.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.586 kcal (2) G-P(sol) polarization free energy of solvation -72.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds