Wall clock time and date at job start Tue Mar 31 2020 10:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47054 * 347.00382 * 3 2 1 5 5 C 1.46897 * 110.99988 * 66.04984 * 4 3 2 6 6 C 1.46902 * 110.99902 * 190.00048 * 4 3 2 7 7 C 1.50699 * 109.47508 * 170.00166 * 6 4 3 8 8 O 1.21285 * 119.99543 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00198 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00293 * 5.32594 * 9 7 6 11 11 C 1.50700 * 109.46880 * 265.21825 * 10 9 7 12 12 H 1.07999 * 120.00274 * 5.04470 * 11 10 9 13 13 C 1.37878 * 120.00004 * 184.76943 * 11 10 9 14 14 N 1.31512 * 120.00245 * 175.23342 * 13 11 10 15 15 Si 1.86803 * 119.99916 * 355.23650 * 13 11 10 16 16 H 1.48505 * 109.47171 * 94.91215 * 15 13 11 17 17 H 1.48503 * 109.46953 * 214.91325 * 15 13 11 18 18 H 1.48502 * 109.46767 * 334.91489 * 15 13 11 19 19 C 1.39925 * 119.99995 * 185.32422 * 9 7 6 20 20 C 1.38896 * 120.07023 * 65.36428 * 19 9 7 21 21 C 1.38096 * 119.92480 * 179.74387 * 20 19 9 22 22 C 1.38299 * 120.07199 * 0.53085 * 21 20 19 23 23 C 1.50701 * 119.92776 * 179.69943 * 22 21 20 24 24 C 1.38256 * 120.14345 * 359.72519 * 22 21 20 25 25 C 1.50699 * 119.96809 * 179.97438 * 24 22 21 26 26 C 1.38140 * 120.06914 * 0.02562 * 24 22 21 27 27 H 4.40879 * 5.52147 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46707 * 227.00589 * 3 2 1 29 29 H 1.09000 * 109.47284 * 107.00899 * 3 2 1 30 30 H 1.09005 * 109.47487 * 183.94894 * 5 4 3 31 31 H 1.08997 * 109.47315 * 303.95107 * 5 4 3 32 32 H 1.09001 * 109.47312 * 63.95178 * 5 4 3 33 33 H 1.09008 * 109.47263 * 50.00142 * 6 4 3 34 34 H 1.09003 * 109.47355 * 290.00253 * 6 4 3 35 35 H 1.08997 * 109.47101 * 145.21635 * 10 9 7 36 36 H 1.08997 * 109.47111 * 25.21285 * 10 9 7 37 37 H 0.96998 * 120.00275 * 180.02562 * 14 13 11 38 38 H 1.07996 * 120.03848 * 359.97438 * 20 19 9 39 39 H 1.08005 * 119.96229 * 180.25008 * 21 20 19 40 40 H 1.09005 * 109.47484 * 270.02289 * 23 22 21 41 41 H 1.08993 * 109.47274 * 30.02281 * 23 22 21 42 42 H 1.08998 * 109.47125 * 150.02240 * 23 22 21 43 43 H 1.08998 * 109.47520 * 270.02384 * 25 24 22 44 44 H 1.09009 * 109.46893 * 30.02069 * 25 24 22 45 45 H 1.09001 * 109.47349 * 150.01770 * 25 24 22 46 46 H 1.08002 * 120.03226 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3486 0.3115 5 6 2.7873 -2.2950 -0.7564 6 6 4.5851 -1.3393 0.5539 7 6 5.0107 -2.6755 1.1059 8 8 4.1881 -3.5496 1.2797 9 7 6.3055 -2.8994 1.4053 10 6 7.2796 -1.8097 1.3054 11 6 7.9511 -1.8584 -0.0428 12 1 7.6233 -2.5723 -0.7840 13 6 8.9804 -0.9878 -0.3322 14 7 9.6286 -1.0915 -1.4717 15 14 9.4541 0.3390 0.8945 16 1 10.5734 -0.1464 1.7411 17 1 9.8795 1.5597 0.1636 18 1 8.2859 0.6584 1.7538 19 6 6.7195 -4.1727 1.8118 20 6 6.6493 -5.2423 0.9284 21 6 7.0637 -6.4966 1.3310 22 6 7.5378 -6.6906 2.6157 23 6 7.9827 -8.0622 3.0537 24 6 7.6039 -5.6291 3.4990 25 6 8.1206 -5.8451 4.8981 26 6 7.1958 -4.3709 3.1009 27 1 -1.0498 -0.0003 0.0003 28 1 3.0089 0.7016 0.7517 29 1 3.0092 0.3014 -0.9827 30 1 3.0999 -3.2989 -0.4688 31 1 1.7090 -2.2820 -0.9155 32 1 3.2939 -2.0067 -1.6774 33 1 4.8285 -0.5556 1.2714 34 1 5.1091 -1.1497 -0.3829 35 1 8.0292 -1.9195 2.0889 36 1 6.7688 -0.8539 1.4225 37 1 10.3529 -0.4792 -1.6752 38 1 6.2747 -5.0924 -0.0733 39 1 7.0132 -7.3279 0.6433 40 1 7.1358 -8.6001 3.4798 41 1 8.3667 -8.6114 2.1941 42 1 8.7675 -7.9671 3.8042 43 1 7.2911 -6.1049 5.5558 44 1 8.8494 -6.6557 4.8951 45 1 8.5951 -4.9312 5.2554 46 1 7.2473 -3.5422 3.7916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192219754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:13 Heat of formation + Delta-G solvation = 60.821642 kcal Electronic energy + Delta-G solvation = -26150.045502 eV Core-core repulsion = 22620.793347 eV Total energy + Delta-G solvation = -3529.252155 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.12147 -38.71746 -36.98661 -35.32582 -33.06980 -32.72869 -32.20919 -31.50417 -28.41063 -28.12289 -27.55664 -27.04675 -25.48019 -23.01730 -22.59991 -21.54632 -20.67618 -18.57568 -18.02750 -17.15715 -16.71247 -16.14004 -15.64886 -15.32347 -15.23365 -14.85449 -14.52469 -14.28826 -13.98092 -13.89647 -13.62175 -13.00436 -12.78251 -12.73470 -12.65158 -12.59376 -12.38570 -12.35480 -12.05003 -11.78785 -11.54220 -11.41865 -11.34354 -11.15491 -10.91888 -10.81535 -10.64270 -10.43158 -10.31303 -10.13162 -9.72835 -9.25238 -8.77972 -8.52668 -8.30129 -8.16454 -7.56357 -6.28271 -4.30094 1.71161 1.81170 2.70853 2.89467 3.12380 3.18959 3.19269 3.22008 3.58392 4.11638 4.20317 4.28693 4.50743 5.01839 5.05977 5.13494 5.15600 5.31324 5.33992 5.35350 5.45565 5.56958 5.61936 5.63096 5.73923 5.79364 5.80662 5.82420 5.91751 5.95350 5.99478 6.02566 6.05945 6.16445 6.35675 6.40128 6.49095 6.52880 6.74284 6.94627 6.97985 7.03376 7.13210 7.16432 7.35987 7.60556 7.66415 7.97636 8.30326 8.74754 8.84412 9.30395 10.84230 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.005114 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.228074 B = 5473.360708 C = 7734.397422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.167 4.167 3 C 0.158 3.842 4 N -0.524 5.524 5 C 0.019 3.981 6 C 0.039 3.961 7 C 0.525 3.475 8 O -0.535 6.535 9 N -0.557 5.557 10 C 0.210 3.790 11 C -0.542 4.542 12 H 0.079 0.921 13 C 0.079 3.921 14 N -0.887 5.887 15 Si 0.869 3.131 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.177 3.823 20 C -0.103 4.103 21 C -0.107 4.107 22 C -0.104 4.104 23 C -0.111 4.111 24 C -0.082 4.082 25 C -0.112 4.112 26 C -0.123 4.123 27 H 0.216 0.784 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.033 0.967 36 H 0.038 0.962 37 H 0.267 0.733 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.063 0.937 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.380 -3.744 7.056 10.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.167 4.167 3 C 0.031 3.969 4 N -0.248 5.248 5 C -0.128 4.128 6 C -0.091 4.091 7 C 0.314 3.686 8 O -0.412 6.412 9 N -0.285 5.285 10 C 0.090 3.910 11 C -0.580 4.580 12 H 0.097 0.903 13 C -0.125 4.125 14 N -0.524 5.524 15 Si 0.695 3.305 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.187 1.187 19 C 0.086 3.914 20 C -0.123 4.123 21 C -0.126 4.126 22 C -0.104 4.104 23 C -0.167 4.167 24 C -0.083 4.083 25 C -0.168 4.168 26 C -0.143 4.143 27 H 0.232 0.768 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.043 0.957 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.051 0.949 36 H 0.056 0.944 37 H 0.077 0.923 38 H 0.137 0.863 39 H 0.137 0.863 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.082 0.918 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.869 -4.230 7.450 11.632 hybrid contribution 0.765 1.259 -0.422 1.533 sum -7.104 -2.971 7.028 10.425 Atomic orbital electron populations 1.24795 0.95791 1.00184 1.02017 1.22852 0.94147 1.00234 0.99507 1.19058 0.85174 0.91450 1.01183 1.61638 1.12847 1.05989 1.44338 1.22566 1.00772 0.98331 0.91179 1.22008 0.87762 0.96487 1.02826 1.20302 0.81348 0.89596 0.77373 1.90621 1.51069 1.46616 1.52851 1.45595 1.08160 1.09469 1.65239 1.19946 0.87898 0.84533 0.98652 1.21286 1.17811 1.20639 0.98277 0.90324 1.24847 0.95232 0.97175 0.95260 1.69892 1.21820 1.37424 1.23274 0.86940 0.79705 0.82108 0.81748 1.19882 1.20694 1.18748 1.17434 0.96957 0.85092 0.91878 1.21144 0.99611 0.92445 0.99056 1.20784 0.99674 0.96596 0.95527 1.19616 1.01457 0.95260 0.94052 1.20781 1.00947 0.93448 1.01524 1.19458 1.00260 0.92591 0.95992 1.20803 1.00681 1.02341 0.93012 1.20974 1.01671 0.96792 0.94843 0.76755 0.88373 0.92065 0.89122 0.91821 0.95732 0.87882 0.89702 0.94947 0.94449 0.92288 0.86311 0.86271 0.91677 0.91944 0.91509 0.91529 0.91358 0.91819 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.49 19.25 29.55 0.57 -1.92 16 2 C -0.17 -2.28 12.38 -37.12 -0.46 -2.74 16 3 C 0.16 2.13 5.46 -6.61 -0.04 2.09 16 4 N -0.52 -8.55 4.48 -247.91 -1.11 -9.66 16 5 C 0.02 0.31 9.03 60.06 0.54 0.85 16 6 C 0.04 0.68 4.07 -4.98 -0.02 0.66 16 7 C 0.53 10.62 7.23 -10.99 -0.08 10.54 16 8 O -0.53 -11.82 13.99 5.55 0.08 -11.74 16 9 N -0.56 -11.57 2.52 -114.74 -0.29 -11.86 16 10 C 0.21 4.56 4.02 -5.19 -0.02 4.54 16 11 C -0.54 -13.93 9.91 -34.44 -0.34 -14.28 16 12 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 13 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 14 N -0.89 -25.29 13.96 55.43 0.77 -24.51 16 15 Si 0.87 19.27 27.48 -169.99 -4.67 14.60 16 16 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.26 -5.39 6.53 56.52 0.37 -5.02 16 19 C 0.18 3.60 4.83 -83.69 -0.40 3.19 16 20 C -0.10 -2.01 9.43 -39.39 -0.37 -2.38 16 21 C -0.11 -1.77 9.69 -39.61 -0.38 -2.16 16 22 C -0.10 -1.57 5.88 -104.59 -0.62 -2.19 16 23 C -0.11 -1.24 9.60 36.01 0.35 -0.90 16 24 C -0.08 -1.29 5.88 -104.65 -0.62 -1.91 16 25 C -0.11 -1.32 9.60 36.01 0.35 -0.98 16 26 C -0.12 -2.22 9.25 -39.39 -0.36 -2.59 16 27 H 0.22 1.72 7.80 -54.10 -0.42 1.30 16 28 H 0.10 1.17 7.93 -51.93 -0.41 0.75 16 29 H 0.06 0.77 8.12 -51.93 -0.42 0.34 16 30 H 0.09 1.65 5.88 -51.93 -0.31 1.35 16 31 H 0.06 0.95 7.17 -51.93 -0.37 0.58 16 32 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 1.60 7.03 -51.92 -0.36 1.24 16 34 H 0.09 1.53 8.12 -51.93 -0.42 1.11 16 35 H 0.03 0.70 7.15 -51.93 -0.37 0.33 16 36 H 0.04 0.76 5.46 -51.93 -0.28 0.48 16 37 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 38 H 0.12 2.38 8.06 -52.49 -0.42 1.95 16 39 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 42 H 0.07 0.67 5.94 -51.93 -0.31 0.36 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.70 5.94 -51.92 -0.31 0.39 16 45 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 46 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 381.84 15.07 5.75 5.75 Total: -1.00 -31.07 381.84 -8.43 -39.50 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -6.96 Total: 6.09 kcal Atomic # 6 Polarization: -6.15 SS G_CDS: -2.01 Total: -8.16 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.63 Total: -46.04 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 19.27 SS G_CDS: -4.67 Total: 14.60 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.07 -8.43 -39.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192219754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.325 kcal (2) G-P(sol) polarization free energy of solvation -31.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds