Wall clock time and date at job start Tue Mar 31 2020 10:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46897 * 109.47054 * 347.00382 * 3 2 1 5 5 C 1.46897 * 110.99988 * 66.04984 * 4 3 2 6 6 C 1.46902 * 110.99902 * 190.00048 * 4 3 2 7 7 C 1.50699 * 109.47508 * 170.00166 * 6 4 3 8 8 O 1.21285 * 119.99543 * 0.02562 * 7 6 4 9 9 N 1.34770 * 120.00198 * 179.97438 * 7 6 4 10 10 C 1.46502 * 120.00293 * 5.32594 * 9 7 6 11 11 C 1.50700 * 109.46880 * 265.21825 * 10 9 7 12 12 H 1.07999 * 120.00274 * 5.04470 * 11 10 9 13 13 C 1.37878 * 120.00004 * 184.76943 * 11 10 9 14 14 N 1.31512 * 120.00245 * 175.23342 * 13 11 10 15 15 Si 1.86803 * 119.99916 * 355.23650 * 13 11 10 16 16 H 1.48505 * 109.47171 * 94.91215 * 15 13 11 17 17 H 1.48503 * 109.46953 * 214.91325 * 15 13 11 18 18 H 1.48502 * 109.46767 * 334.91489 * 15 13 11 19 19 C 1.39925 * 119.99995 * 185.32422 * 9 7 6 20 20 C 1.38896 * 120.07023 * 65.36428 * 19 9 7 21 21 C 1.38096 * 119.92480 * 179.74387 * 20 19 9 22 22 C 1.38299 * 120.07199 * 0.53085 * 21 20 19 23 23 C 1.50701 * 119.92776 * 179.69943 * 22 21 20 24 24 C 1.38256 * 120.14345 * 359.72519 * 22 21 20 25 25 C 1.50699 * 119.96809 * 179.97438 * 24 22 21 26 26 C 1.38140 * 120.06914 * 0.02562 * 24 22 21 27 27 H 4.40879 * 5.52147 * 179.97438 * 4 1 2 28 28 H 1.09002 * 109.46707 * 227.00589 * 3 2 1 29 29 H 1.09000 * 109.47284 * 107.00899 * 3 2 1 30 30 H 1.09005 * 109.47487 * 183.94894 * 5 4 3 31 31 H 1.08997 * 109.47315 * 303.95107 * 5 4 3 32 32 H 1.09001 * 109.47312 * 63.95178 * 5 4 3 33 33 H 1.09008 * 109.47263 * 50.00142 * 6 4 3 34 34 H 1.09003 * 109.47355 * 290.00253 * 6 4 3 35 35 H 1.08997 * 109.47101 * 145.21635 * 10 9 7 36 36 H 1.08997 * 109.47111 * 25.21285 * 10 9 7 37 37 H 0.96998 * 120.00275 * 180.02562 * 14 13 11 38 38 H 1.07996 * 120.03848 * 359.97438 * 20 19 9 39 39 H 1.08005 * 119.96229 * 180.25008 * 21 20 19 40 40 H 1.09005 * 109.47484 * 270.02289 * 23 22 21 41 41 H 1.08993 * 109.47274 * 30.02281 * 23 22 21 42 42 H 1.08998 * 109.47125 * 150.02240 * 23 22 21 43 43 H 1.08998 * 109.47520 * 270.02384 * 25 24 22 44 44 H 1.09009 * 109.46893 * 30.02069 * 25 24 22 45 45 H 1.09001 * 109.47349 * 150.01770 * 25 24 22 46 46 H 1.08002 * 120.03226 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3486 0.3115 5 6 2.7873 -2.2950 -0.7564 6 6 4.5851 -1.3393 0.5539 7 6 5.0107 -2.6755 1.1059 8 8 4.1881 -3.5496 1.2797 9 7 6.3055 -2.8994 1.4053 10 6 7.2796 -1.8097 1.3054 11 6 7.9511 -1.8584 -0.0428 12 1 7.6233 -2.5723 -0.7840 13 6 8.9804 -0.9878 -0.3322 14 7 9.6286 -1.0915 -1.4717 15 14 9.4541 0.3390 0.8945 16 1 10.5734 -0.1464 1.7411 17 1 9.8795 1.5597 0.1636 18 1 8.2859 0.6584 1.7538 19 6 6.7195 -4.1727 1.8118 20 6 6.6493 -5.2423 0.9284 21 6 7.0637 -6.4966 1.3310 22 6 7.5378 -6.6906 2.6157 23 6 7.9827 -8.0622 3.0537 24 6 7.6039 -5.6291 3.4990 25 6 8.1206 -5.8451 4.8981 26 6 7.1958 -4.3709 3.1009 27 1 -1.0498 -0.0003 0.0003 28 1 3.0089 0.7016 0.7517 29 1 3.0092 0.3014 -0.9827 30 1 3.0999 -3.2989 -0.4688 31 1 1.7090 -2.2820 -0.9155 32 1 3.2939 -2.0067 -1.6774 33 1 4.8285 -0.5556 1.2714 34 1 5.1091 -1.1497 -0.3829 35 1 8.0292 -1.9195 2.0889 36 1 6.7688 -0.8539 1.4225 37 1 10.3529 -0.4792 -1.6752 38 1 6.2747 -5.0924 -0.0733 39 1 7.0132 -7.3279 0.6433 40 1 7.1358 -8.6001 3.4798 41 1 8.3667 -8.6114 2.1941 42 1 8.7675 -7.9671 3.8042 43 1 7.2911 -6.1049 5.5558 44 1 8.8494 -6.6557 4.8951 45 1 8.5951 -4.9312 5.2554 46 1 7.2473 -3.5422 3.7916 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192219754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:33:13 Heat of formation + Delta-G solvation = 42.867566 kcal Electronic energy + Delta-G solvation = -26150.824049 eV Core-core repulsion = 22620.793347 eV Total energy + Delta-G solvation = -3530.030702 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.61163 -40.05578 -38.26525 -36.93511 -34.78635 -33.92784 -33.56171 -32.78561 -29.95599 -29.68638 -28.72506 -28.19926 -26.72414 -24.65191 -24.04439 -22.90735 -22.01970 -20.00273 -19.17448 -19.04782 -18.17931 -17.69642 -17.06548 -16.55903 -16.50466 -16.20348 -16.11533 -15.64628 -15.40180 -15.02702 -14.87700 -14.65231 -14.16842 -14.03143 -13.94247 -13.77950 -13.68790 -13.52799 -13.52169 -13.04704 -12.84063 -12.76155 -12.75181 -12.59152 -12.49801 -12.15535 -11.98521 -11.85016 -11.71283 -11.44472 -11.11953 -10.87418 -10.74503 -10.03587 -9.64467 -9.45381 -9.03041 -8.32093 -6.39876 0.35481 0.45975 1.39369 1.40081 1.50438 1.58848 1.66971 1.93246 2.15750 2.33047 2.76517 3.01832 3.08503 3.53048 3.67189 3.91053 3.97640 4.08415 4.16370 4.23376 4.29489 4.37133 4.38768 4.41709 4.50646 4.59039 4.63027 4.71064 4.73563 4.77948 4.82856 4.87143 4.97918 4.99541 5.04229 5.10056 5.18439 5.27117 5.37563 5.45988 5.54729 5.70587 5.72705 5.84167 5.90853 6.10876 6.22221 6.50462 6.64270 6.71558 7.19295 7.29784 8.84320 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008626 B = 0.005114 C = 0.003619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3245.228074 B = 5473.360708 C = 7734.397422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.214 4.214 3 C 0.158 3.842 4 N -0.534 5.534 5 C 0.027 3.973 6 C 0.047 3.953 7 C 0.518 3.482 8 O -0.559 6.559 9 N -0.559 5.559 10 C 0.218 3.782 11 C -0.540 4.540 12 H 0.027 0.973 13 C 0.021 3.979 14 N -0.941 5.941 15 Si 0.939 3.061 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.229 1.229 19 C 0.140 3.860 20 C -0.135 4.135 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.108 4.108 24 C -0.082 4.082 25 C -0.109 4.109 26 C -0.137 4.137 27 H 0.249 0.751 28 H 0.115 0.885 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.025 0.975 33 H 0.127 0.873 34 H 0.073 0.927 35 H 0.040 0.960 36 H 0.062 0.938 37 H 0.269 0.731 38 H 0.092 0.908 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.650 -3.345 10.104 13.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.215 4.215 3 C 0.032 3.968 4 N -0.258 5.258 5 C -0.121 4.121 6 C -0.083 4.083 7 C 0.308 3.692 8 O -0.438 6.438 9 N -0.287 5.287 10 C 0.098 3.902 11 C -0.579 4.579 12 H 0.045 0.955 13 C -0.178 4.178 14 N -0.580 5.580 15 Si 0.761 3.239 16 H -0.195 1.195 17 H -0.207 1.207 18 H -0.151 1.151 19 C 0.049 3.951 20 C -0.155 4.155 21 C -0.131 4.131 22 C -0.103 4.103 23 C -0.164 4.164 24 C -0.083 4.083 25 C -0.165 4.165 26 C -0.157 4.157 27 H 0.266 0.734 28 H 0.133 0.867 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.044 0.956 33 H 0.144 0.856 34 H 0.091 0.909 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.110 0.890 39 H 0.158 0.842 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.104 0.896 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.088 0.912 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.161 -3.842 10.511 13.850 hybrid contribution 0.779 0.972 -1.432 1.897 sum -7.382 -2.870 9.079 12.048 Atomic orbital electron populations 1.25679 0.96667 0.97976 1.00075 1.23106 0.94744 1.02246 1.01386 1.19118 0.85670 0.89905 1.02125 1.61634 1.11923 1.07727 1.44534 1.22423 1.01367 0.97067 0.91232 1.21946 0.88546 0.95313 1.02520 1.20861 0.81027 0.90451 0.76864 1.90591 1.51603 1.47698 1.53926 1.45614 1.08131 1.09680 1.65268 1.19799 0.88298 0.85960 0.96172 1.21384 1.18074 1.19246 0.99147 0.95506 1.25782 0.94959 0.99743 0.97292 1.70059 1.22935 1.39015 1.25982 0.85831 0.80483 0.78326 0.79301 1.19496 1.20668 1.15117 1.17806 0.99003 0.84993 0.93298 1.21162 1.01810 0.94234 0.98280 1.21094 0.99123 0.95912 0.96996 1.20139 0.99691 0.97373 0.93056 1.20868 1.02113 0.90853 1.02561 1.19996 0.98676 0.91614 0.98028 1.20892 1.01674 1.03585 0.90392 1.21208 1.01989 0.98439 0.94047 0.73428 0.86706 0.91417 0.91894 0.90642 0.95618 0.85560 0.90947 0.94155 0.92041 0.92211 0.88985 0.84237 0.89987 0.90941 0.89554 0.89889 0.89202 0.91168 0.85294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.00 19.25 74.32 1.43 -2.57 16 2 C -0.21 -5.57 12.38 31.12 0.39 -5.19 16 3 C 0.16 4.13 5.46 84.50 0.46 4.59 16 4 N -0.53 -17.55 4.48 -938.23 -4.20 -21.75 16 5 C 0.03 0.91 9.03 127.69 1.15 2.06 16 6 C 0.05 1.65 4.07 85.56 0.35 2.00 16 7 C 0.52 21.80 7.23 87.66 0.63 22.43 16 8 O -0.56 -25.99 13.99 -3.05 -0.04 -26.03 16 9 N -0.56 -24.10 2.52 -635.32 -1.60 -25.70 16 10 C 0.22 9.51 4.02 85.63 0.34 9.85 16 11 C -0.54 -28.91 9.91 25.60 0.25 -28.66 16 12 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 13 C 0.02 1.15 5.47 84.66 0.46 1.61 16 14 N -0.94 -55.72 13.96 21.45 0.30 -55.42 16 15 Si 0.94 39.09 27.48 68.60 1.89 40.97 16 16 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 18 H -0.23 -8.20 6.53 99.48 0.65 -7.55 16 19 C 0.14 5.89 4.83 38.15 0.18 6.07 16 20 C -0.14 -5.64 9.43 22.39 0.21 -5.43 16 21 C -0.11 -3.80 9.69 22.25 0.22 -3.59 16 22 C -0.10 -2.95 5.88 -19.85 -0.12 -3.07 16 23 C -0.11 -2.06 9.60 71.24 0.68 -1.38 16 24 C -0.08 -2.45 5.88 -19.88 -0.12 -2.56 16 25 C -0.11 -2.20 9.60 71.24 0.68 -1.52 16 26 C -0.14 -4.92 9.25 22.39 0.21 -4.72 16 27 H 0.25 3.14 7.80 -4.43 -0.03 3.10 16 28 H 0.12 2.55 7.93 -2.39 -0.02 2.53 16 29 H 0.07 1.66 8.12 -2.39 -0.02 1.64 16 30 H 0.06 2.45 5.88 -2.38 -0.01 2.44 16 31 H 0.07 2.29 7.17 -2.39 -0.02 2.27 16 32 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.13 3.77 7.03 -2.38 -0.02 3.75 16 34 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 35 H 0.04 1.71 7.15 -2.39 -0.02 1.69 16 36 H 0.06 2.39 5.46 -2.39 -0.01 2.37 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.09 4.15 8.06 -2.91 -0.02 4.13 16 39 H 0.14 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 41 H 0.07 1.27 8.08 -2.39 -0.02 1.25 16 42 H 0.09 1.34 5.94 -2.39 -0.01 1.33 16 43 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.09 1.43 5.94 -2.38 -0.01 1.42 16 45 H 0.07 1.35 8.08 -2.39 -0.02 1.33 16 46 H 0.13 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -72.17 381.84 4.67 -67.50 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.90 Total: 30.48 kcal Atomic # 6 Polarization: -17.48 SS G_CDS: 7.43 Total: -10.05 kcal Atomic # 7 Polarization: -97.37 SS G_CDS: -5.50 Total: -102.87 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.04 Total: -26.03 kcal Atomic # 14 Polarization: 39.09 SS G_CDS: 1.89 Total: 40.97 kcal Total: -72.17 4.67 -67.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192219754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.370 kcal (2) G-P(sol) polarization free energy of solvation -72.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds