Wall clock time and date at job start Tue Mar 31 2020 10:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46988 * 160.06247 * 3 2 1 5 5 C 1.46903 * 110.99815 * 66.04539 * 4 3 2 6 6 C 1.46896 * 111.00094 * 189.99832 * 4 3 2 7 7 H 1.08997 * 109.47086 * 302.16413 * 6 4 3 8 8 C 1.53004 * 109.46796 * 62.16681 * 6 4 3 9 9 C 1.50702 * 109.46870 * 182.16344 * 6 4 3 10 10 O 1.21281 * 120.00497 * 330.78008 * 9 6 4 11 11 N 1.34777 * 119.99765 * 150.77754 * 9 6 4 12 12 C 1.46503 * 119.99970 * 3.81585 * 11 9 6 13 13 C 1.50705 * 109.46563 * 273.75583 * 12 11 9 14 14 H 1.07998 * 120.00338 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00165 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46837 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47192 * 120.00018 * 17 15 13 20 20 H 1.48501 * 109.47143 * 240.00519 * 17 15 13 21 21 C 1.39923 * 120.00362 * 183.80506 * 11 9 6 22 22 C 1.38875 * 120.07189 * 172.78061 * 21 11 9 23 23 C 1.38110 * 119.92862 * 180.02562 * 22 21 11 24 24 C 1.38286 * 120.06868 * 0.25563 * 23 22 21 25 25 C 1.50703 * 119.92948 * 179.72605 * 24 23 22 26 26 C 1.38285 * 120.14046 * 359.48643 * 24 23 22 27 27 C 1.38111 * 120.07137 * 0.51649 * 26 24 23 28 28 H 4.40889 * 5.52275 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47201 * 40.06561 * 3 2 1 30 30 H 1.08996 * 109.47136 * 280.06166 * 3 2 1 31 31 H 1.09002 * 109.47363 * 189.58021 * 5 4 3 32 32 H 1.08997 * 109.47109 * 309.57833 * 5 4 3 33 33 H 1.08997 * 109.47277 * 69.57979 * 5 4 3 34 34 H 1.08991 * 109.46850 * 304.11316 * 8 6 4 35 35 H 1.09000 * 109.46977 * 64.11640 * 8 6 4 36 36 H 1.09004 * 109.46586 * 184.11177 * 8 6 4 37 37 H 1.08995 * 109.47311 * 33.75070 * 12 11 9 38 38 H 1.08994 * 109.47445 * 153.75724 * 12 11 9 39 39 H 0.96999 * 120.00788 * 179.97438 * 16 15 13 40 40 H 1.07993 * 120.03389 * 0.02562 * 22 21 11 41 41 H 1.07995 * 119.96458 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47347 * 89.99310 * 25 24 23 43 43 H 1.08997 * 109.47368 * 209.99474 * 25 24 23 44 44 H 1.09000 * 109.46727 * 329.99995 * 25 24 23 45 45 H 1.08000 * 119.95906 * 180.23608 * 26 24 23 46 46 H 1.07995 * 120.03148 * 179.76800 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.3029 -0.4723 5 6 2.7851 2.3711 0.4734 6 6 4.5839 1.2658 -0.7119 7 1 5.0966 0.9767 0.2056 8 6 4.8930 0.2477 -1.8114 9 6 5.0568 2.6301 -1.1431 10 8 4.3057 3.3715 -1.7407 11 7 6.3145 3.0265 -0.8646 12 6 7.2478 2.1011 -0.2173 13 6 7.0753 2.1779 1.2778 14 1 6.3440 2.8491 1.7033 15 6 7.8511 1.3912 2.1026 16 7 8.7420 0.5742 1.5845 17 14 7.6378 1.4867 3.9559 18 1 6.5788 2.4755 4.2819 19 1 7.2469 0.1530 4.4786 20 1 8.9177 1.9075 4.5804 21 6 6.7290 4.3217 -1.1939 22 6 7.9706 4.7825 -0.7757 23 6 8.3765 6.0616 -1.1020 24 6 7.5459 6.8852 -1.8397 25 6 7.9895 8.2825 -2.1886 26 6 6.3113 6.4275 -2.2621 27 6 5.8995 5.1494 -1.9391 28 1 -1.0502 -0.0002 0.0003 29 1 3.0097 -0.7857 -0.6615 30 1 3.0095 -0.1787 1.0118 31 1 3.0052 3.3400 0.0250 32 1 1.7227 2.3132 0.7100 33 1 3.3677 2.2529 1.3870 34 1 4.4862 -0.7240 -1.5316 35 1 4.4406 0.5752 -2.7474 36 1 5.9726 0.1668 -1.9385 37 1 7.0446 1.0849 -0.5548 38 1 8.2701 2.3735 -0.4796 39 1 9.2881 0.0209 2.1647 40 1 8.6179 4.1412 -0.1961 41 1 9.3417 6.4207 -0.7767 42 1 8.5196 8.2683 -3.1410 43 1 7.1173 8.9314 -2.2680 44 1 8.6525 8.6584 -1.4094 45 1 5.6665 7.0718 -2.8414 46 1 4.9335 4.7939 -2.2662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192230566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:20 Heat of formation + Delta-G solvation = 71.304587 kcal Electronic energy + Delta-G solvation = -26743.661458 eV Core-core repulsion = 23214.863877 eV Total energy + Delta-G solvation = -3528.797581 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.45908 -38.50718 -36.99220 -35.42858 -33.21843 -32.81603 -31.57956 -30.41919 -30.33994 -27.78060 -27.60122 -26.03239 -24.47165 -23.55786 -22.51783 -21.81332 -20.47262 -18.73760 -18.07078 -16.98127 -16.89207 -16.23166 -15.63534 -15.05870 -15.02765 -14.72710 -14.52942 -14.35510 -13.69210 -13.61787 -13.41495 -13.17127 -12.90308 -12.74552 -12.63574 -12.54541 -12.06372 -11.93043 -11.91024 -11.59013 -11.49402 -11.23628 -11.20028 -11.07877 -11.05802 -10.79812 -10.55651 -10.34012 -10.29717 -10.08993 -9.99169 -9.10518 -8.76976 -8.58286 -8.34403 -8.04857 -7.12011 -6.34041 -4.43407 1.82713 2.01288 2.73630 2.94984 3.11484 3.18337 3.21739 3.26844 3.58988 4.18483 4.28249 4.44225 4.53990 4.93076 4.99641 5.31469 5.34272 5.38710 5.44149 5.54598 5.59811 5.64221 5.71361 5.80281 5.80841 5.89479 5.95045 5.98176 6.03571 6.11275 6.15000 6.19047 6.28727 6.36389 6.42676 6.54227 6.76175 6.88127 6.94814 7.04079 7.14593 7.17331 7.20411 7.29922 7.58540 7.71689 7.81712 7.84378 8.08096 8.62059 8.79058 9.25071 10.71649 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.005627 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.213789 B = 4974.562935 C = 7176.219290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.164 4.164 3 C 0.153 3.847 4 N -0.517 5.517 5 C 0.017 3.983 6 C 0.062 3.938 7 H 0.097 0.903 8 C -0.141 4.141 9 C 0.528 3.472 10 O -0.526 6.526 11 N -0.535 5.535 12 C 0.225 3.775 13 C -0.542 4.542 14 H 0.062 0.938 15 C 0.070 3.930 16 N -0.886 5.886 17 Si 0.894 3.106 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.280 1.280 21 C 0.166 3.834 22 C -0.143 4.143 23 C -0.104 4.104 24 C -0.132 4.132 25 C -0.104 4.104 26 C -0.107 4.107 27 C -0.177 4.177 28 H 0.215 0.785 29 H 0.103 0.897 30 H 0.062 0.938 31 H 0.081 0.919 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.048 0.952 39 H 0.267 0.733 40 H 0.137 0.863 41 H 0.116 0.884 42 H 0.060 0.940 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.113 0.887 46 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.853 2.675 -4.469 7.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.164 4.164 3 C 0.027 3.973 4 N -0.242 5.242 5 C -0.131 4.131 6 C -0.048 4.048 7 H 0.115 0.885 8 C -0.199 4.199 9 C 0.317 3.683 10 O -0.405 6.405 11 N -0.254 5.254 12 C 0.106 3.894 13 C -0.580 4.580 14 H 0.081 0.919 15 C -0.134 4.134 16 N -0.523 5.523 17 Si 0.721 3.279 18 H -0.196 1.196 19 H -0.207 1.207 20 H -0.206 1.206 21 C 0.070 3.930 22 C -0.163 4.163 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.161 4.161 26 C -0.125 4.125 27 C -0.196 4.196 28 H 0.232 0.768 29 H 0.121 0.879 30 H 0.080 0.920 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.155 0.845 41 H 0.134 0.866 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.131 0.869 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -6.305 2.921 -5.146 8.647 hybrid contribution 0.412 -0.217 2.054 2.106 sum -5.894 2.704 -3.093 7.184 Atomic orbital electron populations 1.24783 0.95765 1.00446 1.02128 1.22871 0.94124 1.00087 0.99355 1.19142 0.85010 0.92926 1.00253 1.61782 1.12620 1.03370 1.46447 1.22525 1.00621 0.95962 0.93981 1.21714 0.88130 0.93518 1.01488 0.88511 1.21824 1.02423 0.97633 0.97976 1.20374 0.80883 0.88447 0.78557 1.90245 1.55151 1.54192 1.40866 1.46007 1.12706 1.11778 1.54886 1.19766 0.88828 0.88015 0.92826 1.21406 1.21844 1.24306 0.90438 0.91950 1.24901 0.94583 0.94715 0.99204 1.69913 1.22140 1.24502 1.35767 0.86481 0.78446 0.78138 0.84786 1.19593 1.20670 1.20573 1.18072 0.94046 0.85009 0.95853 1.21086 0.96254 0.96696 1.02306 1.20722 0.99053 0.93504 0.98946 1.19780 0.95617 0.96387 1.01527 1.20660 1.00977 0.93334 1.01094 1.20902 0.95523 0.95919 1.00190 1.22750 1.03332 0.93798 0.99768 0.76795 0.87926 0.92023 0.90009 0.91654 0.95063 0.91413 0.91577 0.90979 0.93467 0.93374 0.92296 0.84510 0.86579 0.92089 0.92293 0.92238 0.86852 0.80463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.62 19.25 29.55 0.57 -2.05 16 2 C -0.16 -2.32 12.31 -37.12 -0.46 -2.78 16 3 C 0.15 2.20 5.30 -6.61 -0.04 2.17 16 4 N -0.52 -8.72 4.37 -239.80 -1.05 -9.77 16 5 C 0.02 0.29 8.91 60.07 0.54 0.83 16 6 C 0.06 1.11 1.63 -68.86 -0.11 1.00 16 7 H 0.10 1.91 6.10 -51.93 -0.32 1.59 16 8 C -0.14 -2.16 8.99 37.16 0.33 -1.83 16 9 C 0.53 10.67 5.77 -10.98 -0.06 10.61 16 10 O -0.53 -11.17 11.55 5.56 0.06 -11.10 16 11 N -0.53 -11.27 2.69 -114.74 -0.31 -11.58 16 12 C 0.22 5.06 4.19 -5.19 -0.02 5.03 16 13 C -0.54 -13.28 8.36 -34.44 -0.29 -13.56 16 14 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 15 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 16 N -0.89 -22.93 13.29 55.43 0.74 -22.19 16 17 Si 0.89 19.75 29.54 -169.99 -5.02 14.72 16 18 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 21 C 0.17 3.43 6.49 -83.69 -0.54 2.88 16 22 C -0.14 -2.80 9.15 -39.39 -0.36 -3.16 16 23 C -0.10 -1.75 9.69 -39.61 -0.38 -2.13 16 24 C -0.13 -2.09 5.88 -104.59 -0.62 -2.71 16 25 C -0.10 -1.25 10.01 36.01 0.36 -0.89 16 26 C -0.11 -1.79 9.69 -39.61 -0.38 -2.18 16 27 C -0.18 -3.44 9.04 -39.39 -0.36 -3.80 16 28 H 0.22 1.80 7.80 -54.08 -0.42 1.38 16 29 H 0.10 1.31 5.84 -51.93 -0.30 1.00 16 30 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 31 H 0.08 1.54 6.16 -51.93 -0.32 1.22 16 32 H 0.06 1.02 7.02 -51.93 -0.36 0.65 16 33 H 0.03 0.55 8.12 -51.93 -0.42 0.12 16 34 H 0.07 0.88 6.06 -51.93 -0.31 0.56 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.12 6.83 -51.93 -0.35 0.77 16 37 H 0.05 1.07 5.55 -51.93 -0.29 0.78 16 38 H 0.05 1.14 6.32 -51.93 -0.33 0.82 16 39 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 40 H 0.14 2.82 6.28 -52.49 -0.33 2.49 16 41 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.06 0.64 8.09 -51.93 -0.42 0.22 16 44 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 45 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 46 H 0.18 3.64 4.55 -56.15 -0.26 3.38 16 LS Contribution 372.32 15.07 5.61 5.61 Total: -1.00 -27.58 372.32 -8.40 -35.98 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: -6.52 Total: 9.24 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.92 Total: -10.91 kcal Atomic # 7 Polarization: -42.92 SS G_CDS: -0.62 Total: -43.54 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.06 Total: -11.10 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -27.58 -8.40 -35.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192230566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.282 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds