Wall clock time and date at job start Tue Mar 31 2020 10:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46901 * 109.46988 * 160.06247 * 3 2 1 5 5 C 1.46903 * 110.99815 * 66.04539 * 4 3 2 6 6 C 1.46896 * 111.00094 * 189.99832 * 4 3 2 7 7 H 1.08997 * 109.47086 * 302.16413 * 6 4 3 8 8 C 1.53004 * 109.46796 * 62.16681 * 6 4 3 9 9 C 1.50702 * 109.46870 * 182.16344 * 6 4 3 10 10 O 1.21281 * 120.00497 * 330.78008 * 9 6 4 11 11 N 1.34777 * 119.99765 * 150.77754 * 9 6 4 12 12 C 1.46503 * 119.99970 * 3.81585 * 11 9 6 13 13 C 1.50705 * 109.46563 * 273.75583 * 12 11 9 14 14 H 1.07998 * 120.00338 * 359.97438 * 13 12 11 15 15 C 1.37877 * 119.99736 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00303 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00165 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46837 * 0.02562 * 17 15 13 19 19 H 1.48492 * 109.47192 * 120.00018 * 17 15 13 20 20 H 1.48501 * 109.47143 * 240.00519 * 17 15 13 21 21 C 1.39923 * 120.00362 * 183.80506 * 11 9 6 22 22 C 1.38875 * 120.07189 * 172.78061 * 21 11 9 23 23 C 1.38110 * 119.92862 * 180.02562 * 22 21 11 24 24 C 1.38286 * 120.06868 * 0.25563 * 23 22 21 25 25 C 1.50703 * 119.92948 * 179.72605 * 24 23 22 26 26 C 1.38285 * 120.14046 * 359.48643 * 24 23 22 27 27 C 1.38111 * 120.07137 * 0.51649 * 26 24 23 28 28 H 4.40889 * 5.52275 * 180.02562 * 4 1 2 29 29 H 1.09000 * 109.47201 * 40.06561 * 3 2 1 30 30 H 1.08996 * 109.47136 * 280.06166 * 3 2 1 31 31 H 1.09002 * 109.47363 * 189.58021 * 5 4 3 32 32 H 1.08997 * 109.47109 * 309.57833 * 5 4 3 33 33 H 1.08997 * 109.47277 * 69.57979 * 5 4 3 34 34 H 1.08991 * 109.46850 * 304.11316 * 8 6 4 35 35 H 1.09000 * 109.46977 * 64.11640 * 8 6 4 36 36 H 1.09004 * 109.46586 * 184.11177 * 8 6 4 37 37 H 1.08995 * 109.47311 * 33.75070 * 12 11 9 38 38 H 1.08994 * 109.47445 * 153.75724 * 12 11 9 39 39 H 0.96999 * 120.00788 * 179.97438 * 16 15 13 40 40 H 1.07993 * 120.03389 * 0.02562 * 22 21 11 41 41 H 1.07995 * 119.96458 * 179.97438 * 23 22 21 42 42 H 1.09003 * 109.47347 * 89.99310 * 25 24 23 43 43 H 1.08997 * 109.47368 * 209.99474 * 25 24 23 44 44 H 1.09000 * 109.46727 * 329.99995 * 25 24 23 45 45 H 1.08000 * 119.95906 * 180.23608 * 26 24 23 46 46 H 1.07995 * 120.03148 * 179.76800 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1351 1.3029 -0.4723 5 6 2.7851 2.3711 0.4734 6 6 4.5839 1.2658 -0.7119 7 1 5.0966 0.9767 0.2056 8 6 4.8930 0.2477 -1.8114 9 6 5.0568 2.6301 -1.1431 10 8 4.3057 3.3715 -1.7407 11 7 6.3145 3.0265 -0.8646 12 6 7.2478 2.1011 -0.2173 13 6 7.0753 2.1779 1.2778 14 1 6.3440 2.8491 1.7033 15 6 7.8511 1.3912 2.1026 16 7 8.7420 0.5742 1.5845 17 14 7.6378 1.4867 3.9559 18 1 6.5788 2.4755 4.2819 19 1 7.2469 0.1530 4.4786 20 1 8.9177 1.9075 4.5804 21 6 6.7290 4.3217 -1.1939 22 6 7.9706 4.7825 -0.7757 23 6 8.3765 6.0616 -1.1020 24 6 7.5459 6.8852 -1.8397 25 6 7.9895 8.2825 -2.1886 26 6 6.3113 6.4275 -2.2621 27 6 5.8995 5.1494 -1.9391 28 1 -1.0502 -0.0002 0.0003 29 1 3.0097 -0.7857 -0.6615 30 1 3.0095 -0.1787 1.0118 31 1 3.0052 3.3400 0.0250 32 1 1.7227 2.3132 0.7100 33 1 3.3677 2.2529 1.3870 34 1 4.4862 -0.7240 -1.5316 35 1 4.4406 0.5752 -2.7474 36 1 5.9726 0.1668 -1.9385 37 1 7.0446 1.0849 -0.5548 38 1 8.2701 2.3735 -0.4796 39 1 9.2881 0.0209 2.1647 40 1 8.6179 4.1412 -0.1961 41 1 9.3417 6.4207 -0.7767 42 1 8.5196 8.2683 -3.1410 43 1 7.1173 8.9314 -2.2680 44 1 8.6525 8.6584 -1.4094 45 1 5.6665 7.0718 -2.8414 46 1 4.9335 4.7939 -2.2662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192230566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:19 Heat of formation + Delta-G solvation = 57.332184 kcal Electronic energy + Delta-G solvation = -26744.267347 eV Core-core repulsion = 23214.863877 eV Total energy + Delta-G solvation = -3529.403469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.00514 -39.89541 -38.34996 -37.08097 -34.78046 -34.24151 -32.89862 -31.77775 -31.72730 -29.42430 -28.95722 -27.32205 -25.85980 -25.29674 -23.88419 -23.30477 -21.87530 -20.24166 -19.18184 -18.77372 -18.45759 -17.83010 -16.98928 -16.51881 -16.41959 -16.37371 -15.93649 -15.80002 -15.10378 -14.92400 -14.74072 -14.46458 -14.39003 -14.20708 -14.01980 -13.96864 -13.54224 -13.35592 -13.20673 -12.97924 -12.94367 -12.73857 -12.68334 -12.55612 -12.49728 -12.35145 -12.22072 -11.89772 -11.80096 -11.40424 -11.06071 -10.73006 -10.69136 -10.12650 -9.78016 -9.42519 -8.66956 -8.25047 -6.42553 0.38831 0.57345 1.34182 1.38551 1.46365 1.52797 1.77914 1.94095 2.09662 2.35176 2.97927 3.01976 3.02415 3.42238 3.53832 4.03702 4.09883 4.12138 4.16531 4.22865 4.30900 4.34637 4.48055 4.54396 4.55548 4.57605 4.63090 4.67695 4.83187 4.89484 4.91121 4.93728 4.95759 5.03121 5.11386 5.20026 5.23408 5.27192 5.45775 5.55941 5.61765 5.74989 5.81958 5.83753 5.89631 5.92201 6.33419 6.41956 6.70047 6.72468 7.16627 7.29405 8.77669 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008998 B = 0.005627 C = 0.003901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3111.213789 B = 4974.562935 C = 7176.219290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.213 4.213 3 C 0.154 3.846 4 N -0.521 5.521 5 C 0.026 3.974 6 C 0.068 3.932 7 H 0.076 0.924 8 C -0.135 4.135 9 C 0.522 3.478 10 O -0.540 6.540 11 N -0.540 5.540 12 C 0.242 3.758 13 C -0.543 4.543 14 H 0.045 0.955 15 C 0.034 3.966 16 N -0.910 5.910 17 Si 0.948 3.052 18 H -0.277 1.277 19 H -0.272 1.272 20 H -0.276 1.276 21 C 0.134 3.866 22 C -0.161 4.161 23 C -0.104 4.104 24 C -0.123 4.123 25 C -0.102 4.102 26 C -0.106 4.106 27 C -0.191 4.191 28 H 0.251 0.749 29 H 0.118 0.882 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.019 0.981 34 H 0.094 0.906 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.031 0.969 39 H 0.271 0.729 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.142 0.858 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.685 3.611 -4.637 8.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.214 4.214 3 C 0.028 3.972 4 N -0.246 5.246 5 C -0.122 4.122 6 C -0.043 4.043 7 H 0.093 0.907 8 C -0.192 4.192 9 C 0.313 3.687 10 O -0.420 6.420 11 N -0.260 5.260 12 C 0.122 3.878 13 C -0.581 4.581 14 H 0.063 0.937 15 C -0.168 4.168 16 N -0.549 5.549 17 Si 0.774 3.226 18 H -0.202 1.202 19 H -0.198 1.198 20 H -0.202 1.202 21 C 0.039 3.961 22 C -0.181 4.181 23 C -0.122 4.122 24 C -0.124 4.124 25 C -0.158 4.158 26 C -0.125 4.125 27 C -0.210 4.210 28 H 0.267 0.733 29 H 0.135 0.865 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.038 0.962 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.135 0.865 41 H 0.160 0.840 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.092 0.908 45 H 0.159 0.841 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -7.138 3.862 -5.320 9.704 hybrid contribution 0.624 -0.408 2.054 2.185 sum -6.515 3.453 -3.266 8.065 Atomic orbital electron populations 1.25676 0.96587 0.98005 0.99852 1.23014 0.94551 1.02322 1.01498 1.19158 0.85835 0.91748 1.00465 1.61814 1.11605 1.04644 1.46578 1.22393 1.01333 0.95223 0.93278 1.21640 0.88736 0.92700 1.01235 0.90668 1.21807 1.02149 0.98166 0.97096 1.20799 0.80479 0.89213 0.78251 1.90236 1.55301 1.54801 1.41619 1.45971 1.12851 1.12060 1.55123 1.19415 0.88302 0.88147 0.91949 1.21424 1.21321 1.23834 0.91537 0.93709 1.25485 0.94320 0.94429 1.02580 1.69979 1.22756 1.25098 1.37017 0.85649 0.78133 0.78184 0.80646 1.20175 1.19756 1.20187 1.18371 0.95071 0.85200 0.97501 1.21069 0.95922 0.97943 1.03175 1.21061 1.00295 0.92398 0.98463 1.20245 0.94594 0.98071 0.99464 1.20736 1.02121 0.90593 1.02350 1.21244 0.96397 0.95045 0.99780 1.22703 1.02867 0.95054 1.00407 0.73278 0.86479 0.92184 0.92230 0.90048 0.96238 0.88756 0.91469 0.91638 0.93709 0.95064 0.91990 0.86541 0.84000 0.90370 0.90711 0.90828 0.84059 0.81757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.04 19.25 74.32 1.43 -2.61 16 2 C -0.21 -5.77 12.31 31.13 0.38 -5.38 16 3 C 0.15 4.37 5.30 84.50 0.45 4.82 16 4 N -0.52 -17.85 4.37 -912.58 -3.99 -21.84 16 5 C 0.03 0.91 8.91 127.69 1.14 2.05 16 6 C 0.07 2.51 1.63 44.17 0.07 2.59 16 7 H 0.08 3.11 6.10 -2.39 -0.01 3.10 16 8 C -0.13 -4.18 8.99 71.98 0.65 -3.53 16 9 C 0.52 22.13 5.77 87.66 0.51 22.63 16 10 O -0.54 -23.90 11.55 -3.03 -0.04 -23.94 16 11 N -0.54 -24.07 2.69 -635.31 -1.71 -25.77 16 12 C 0.24 11.48 4.19 85.63 0.36 11.84 16 13 C -0.54 -27.71 8.36 25.60 0.21 -27.49 16 14 H 0.04 2.41 7.81 -2.91 -0.02 2.39 16 15 C 0.03 1.71 5.46 84.66 0.46 2.17 16 16 N -0.91 -47.95 13.29 21.45 0.28 -47.66 16 17 Si 0.95 40.97 29.54 68.60 2.03 43.00 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 20 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 21 C 0.13 5.75 6.49 38.15 0.25 6.00 16 22 C -0.16 -6.50 9.15 22.39 0.20 -6.29 16 23 C -0.10 -3.41 9.69 22.25 0.22 -3.19 16 24 C -0.12 -3.62 5.88 -19.84 -0.12 -3.74 16 25 C -0.10 -2.05 10.01 71.24 0.71 -1.33 16 26 C -0.11 -3.44 9.69 22.25 0.22 -3.22 16 27 C -0.19 -7.57 9.04 22.39 0.20 -7.36 16 28 H 0.25 3.23 7.80 -4.41 -0.03 3.19 16 29 H 0.12 2.88 5.84 -2.39 -0.01 2.87 16 30 H 0.06 1.71 8.12 -2.39 -0.02 1.69 16 31 H 0.06 2.35 6.16 -2.39 -0.01 2.33 16 32 H 0.08 2.55 7.02 -2.39 -0.02 2.53 16 33 H 0.02 0.71 8.12 -2.39 -0.02 0.69 16 34 H 0.09 2.37 6.06 -2.39 -0.01 2.36 16 35 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.06 2.10 6.83 -2.39 -0.02 2.09 16 37 H 0.05 2.13 5.55 -2.39 -0.01 2.12 16 38 H 0.03 1.58 6.32 -2.39 -0.02 1.57 16 39 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 40 H 0.12 5.11 6.28 -2.91 -0.02 5.09 16 41 H 0.14 3.84 8.06 -2.91 -0.02 3.81 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.07 1.31 8.09 -2.39 -0.02 1.29 16 44 H 0.07 1.32 8.08 -2.39 -0.02 1.30 16 45 H 0.14 3.71 8.06 -2.91 -0.02 3.68 16 46 H 0.17 6.98 4.55 -60.85 -0.28 6.70 16 Total: -1.00 -61.10 372.32 4.63 -56.47 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: 0.72 Total: 31.82 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 7.34 Total: -12.06 kcal Atomic # 7 Polarization: -89.87 SS G_CDS: -5.41 Total: -95.28 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: -0.04 Total: -23.94 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -61.10 4.63 -56.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192230566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.799 kcal (2) G-P(sol) polarization free energy of solvation -61.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds