Wall clock time and date at job start Tue Mar 31 2020 11:21:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46493 * 120.00164 * 2 1
4 4 C 1.50700 * 109.47411 * 270.00372 * 3 2 1
5 5 H 1.08003 * 119.99611 * 359.97438 * 4 3 2
6 6 C 1.37877 * 120.00182 * 180.02562 * 4 3 2
7 7 N 1.31511 * 120.00003 * 359.97438 * 6 4 3
8 8 Si 1.86796 * 120.00012 * 180.02562 * 6 4 3
9 9 H 1.48499 * 109.47382 * 59.99666 * 8 6 4
10 10 H 1.48507 * 109.47242 * 179.97438 * 8 6 4
11 11 H 1.48501 * 109.47166 * 299.99393 * 8 6 4
12 12 C 1.34774 * 119.99726 * 180.02562 * 2 1 3
13 13 O 1.21284 * 119.99772 * 179.97438 * 12 2 1
14 14 C 1.50700 * 120.00498 * 359.97438 * 12 2 1
15 15 C 1.53000 * 109.47391 * 180.02562 * 14 12 2
16 16 N 1.46899 * 109.46972 * 185.21758 * 15 14 12
17 17 C 1.43450 * 110.99904 * 184.09620 * 16 15 14
18 18 C 1.52283 * 104.89926 * 224.81302 * 17 16 15
19 19 S 1.74917 * 114.46444 * 267.14063 * 18 17 16
20 20 C 1.84975 * 101.42073 * 61.57099 * 19 18 17
21 21 C 1.52999 * 109.56175 * 53.10868 * 20 19 18
22 22 C 1.53001 * 109.55655 * 173.31882 * 20 19 18
23 23 C 1.50605 * 109.03376 * 293.21023 * 20 19 18
24 24 C 1.47215 * 110.99874 * 308.57405 * 16 15 14
25 25 H 1.09005 * 109.46856 * 269.99627 * 1 2 3
26 26 H 1.08995 * 109.47245 * 29.99541 * 1 2 3
27 27 H 1.08994 * 109.47153 * 149.99578 * 1 2 3
28 28 H 1.09006 * 109.47248 * 30.00059 * 3 2 1
29 29 H 1.09000 * 109.47236 * 149.99971 * 3 2 1
30 30 H 0.97001 * 120.00217 * 180.02562 * 7 6 4
31 31 H 1.08998 * 109.47212 * 59.99711 * 14 12 2
32 32 H 1.09006 * 109.46650 * 300.00124 * 14 12 2
33 33 H 1.08998 * 109.47386 * 65.21500 * 15 14 12
34 34 H 1.09004 * 109.46448 * 305.21012 * 15 14 12
35 35 H 1.09001 * 110.34938 * 105.97253 * 17 16 15
36 36 H 1.08998 * 110.48303 * 343.72576 * 17 16 15
37 37 H 1.09002 * 108.48325 * 145.84572 * 18 17 16
38 38 H 1.09003 * 108.48461 * 28.42931 * 18 17 16
39 39 H 1.08995 * 109.47515 * 180.21373 * 21 20 19
40 40 H 1.09000 * 109.47106 * 60.20612 * 21 20 19
41 41 H 1.09001 * 109.47134 * 300.21193 * 21 20 19
42 42 H 1.09004 * 109.47423 * 299.78388 * 22 20 19
43 43 H 1.09000 * 109.47229 * 59.78294 * 22 20 19
44 44 H 1.08996 * 109.47372 * 179.78221 * 22 20 19
45 45 H 1.09001 * 108.03882 * 210.98654 * 23 20 19
46 46 H 1.09003 * 108.03802 * 327.43758 * 23 20 19
47 47 H 1.09000 * 107.84693 * 315.36440 * 24 16 15
48 48 H 1.09001 * 107.84911 * 71.36157 * 24 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2686 0.0000
4 6 2.4487 1.7038 -1.4208
5 1 2.0980 1.0958 -2.2417
6 6 3.1269 2.8775 -1.6727
7 7 3.5543 3.6175 -0.6731
8 14 3.4376 3.4171 -3.4338
9 1 2.1398 3.5956 -4.1332
10 1 4.1802 4.7032 -3.4338
11 1 4.2393 2.3821 -4.1346
12 6 2.1389 -1.1672 -0.0005
13 8 3.3517 -1.1672 -0.0010
14 6 1.3854 -2.4723 -0.0005
15 6 2.3796 -3.6353 -0.0005
16 7 1.6495 -4.9037 -0.1265
17 6 2.5427 -6.0224 -0.0348
18 6 2.1168 -6.9568 -1.1593
19 16 0.9592 -8.1796 -0.6856
20 6 -0.4732 -7.1396 -0.1487
21 6 -0.8387 -6.1567 -1.2627
22 6 -1.6733 -8.0385 0.1553
23 6 -0.0883 -6.3761 1.0912
24 6 0.5717 -4.9934 0.8724
25 1 -0.3633 -0.0001 1.0277
26 1 -0.3633 0.8900 -0.5137
27 1 -0.3633 -0.8899 -0.5139
28 1 1.6085 2.0284 0.5139
29 1 3.1499 1.1383 0.5138
30 1 4.0312 4.4434 -0.8503
31 1 0.7584 -2.5299 -0.8902
32 1 0.7591 -2.5302 0.8898
33 1 2.9432 -3.6315 0.9324
34 1 3.0661 -3.5263 -0.8402
35 1 2.4334 -6.5166 0.9305
36 1 3.5738 -5.7000 -0.1800
37 1 3.0045 -7.4541 -1.5503
38 1 1.6799 -6.3585 -1.9589
39 1 -1.6803 -5.5421 -0.9434
40 1 -1.1132 -6.7107 -2.1604
41 1 0.0172 -5.5170 -1.4782
42 1 -1.9483 -8.5933 -0.7419
43 1 -1.4115 -8.7382 0.9490
44 1 -2.5153 -7.4247 0.4752
45 1 -0.9864 -6.2336 1.6922
46 1 0.6042 -6.9917 1.6653
47 1 0.9743 -4.6606 1.8290
48 1 -0.2119 -4.2936 0.5821
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000228088702.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:21:07
Heat of formation + Delta-G solvation = -30.363511 kcal
Electronic energy + Delta-G solvation = -25067.036758 eV
Core-core repulsion = 21669.274469 eV
Total energy + Delta-G solvation = -3397.762289 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-39.65743 -38.64804 -36.04898 -34.82878 -32.83330 -32.35962 -30.50962 -28.84320
-27.68595 -27.41233 -25.76667 -24.39896 -23.72020 -22.18538 -21.38973 -19.54931
-18.32970 -17.11521 -16.56358 -16.48166 -16.03780 -15.65617 -15.25928 -15.12943
-14.85755 -14.69880 -14.19401 -13.95483 -13.73942 -13.23438 -13.18586 -12.85885
-12.48671 -12.32169 -12.24605 -12.22413 -12.15199 -11.95833 -11.81951 -11.59877
-11.35119 -11.26586 -11.10139 -11.01979 -10.91253 -10.82154 -10.69190 -10.54918
-10.16866 -9.79052 -9.65771 -8.92353 -8.46307 -8.44502 -7.79569 -7.66329
-6.05447 -4.10406 1.64353 2.39686 3.31070 3.35395 3.36385 3.43416
3.58757 4.06153 4.25919 4.43918 4.51011 4.77466 4.79997 4.90194
4.92423 5.04608 5.10366 5.12453 5.21513 5.26971 5.31377 5.34977
5.39590 5.43403 5.52661 5.56050 5.62023 5.64438 5.71552 5.73761
5.76665 5.84304 5.89664 5.94924 6.04489 6.12093 6.19698 6.24803
6.87999 6.99462 7.04878 7.42320 7.52193 7.90724 8.22120 8.39971
8.88536 9.07456 9.54764 11.02654
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.024333 B = 0.002711 C = 0.002656
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1150.405815 B =10327.417391 C =10541.153528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.084 3.916
2 N -0.603 5.603
3 C 0.245 3.755
4 C -0.527 4.527
5 H 0.057 0.943
6 C 0.061 3.939
7 N -0.896 5.896
8 Si 0.899 3.101
9 H -0.277 1.277
10 H -0.286 1.286
11 H -0.276 1.276
12 C 0.504 3.496
13 O -0.545 6.545
14 C -0.139 4.139
15 C 0.074 3.926
16 N -0.536 5.536
17 C 0.055 3.945
18 C -0.111 4.111
19 S -0.247 6.247
20 C -0.004 4.004
21 C -0.156 4.156
22 C -0.130 4.130
23 C -0.114 4.114
24 C 0.049 3.951
25 H 0.043 0.957
26 H 0.073 0.927
27 H 0.057 0.943
28 H 0.031 0.969
29 H 0.043 0.957
30 H 0.264 0.736
31 H 0.095 0.905
32 H 0.083 0.917
33 H 0.043 0.957
34 H 0.089 0.911
35 H 0.061 0.939
36 H 0.080 0.920
37 H 0.096 0.904
38 H 0.099 0.901
39 H 0.060 0.940
40 H 0.056 0.944
41 H 0.094 0.906
42 H 0.064 0.936
43 H 0.061 0.939
44 H 0.069 0.931
45 H 0.078 0.922
46 H 0.068 0.932
47 H 0.037 0.963
48 H 0.075 0.925
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.271 -22.082 3.353 25.018
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 N -0.335 5.335
3 C 0.126 3.874
4 C -0.566 4.566
5 H 0.075 0.925
6 C -0.141 4.141
7 N -0.535 5.535
8 Si 0.726 3.274
9 H -0.202 1.202
10 H -0.212 1.212
11 H -0.201 1.201
12 C 0.290 3.710
13 O -0.423 6.423
14 C -0.179 4.179
15 C -0.054 4.054
16 N -0.260 5.260
17 C -0.076 4.076
18 C -0.260 4.260
19 S -0.019 6.019
20 C -0.113 4.113
21 C -0.215 4.215
22 C -0.189 4.189
23 C -0.153 4.153
24 C -0.079 4.079
25 H 0.061 0.939
26 H 0.092 0.908
27 H 0.076 0.924
28 H 0.049 0.951
29 H 0.061 0.939
30 H 0.074 0.926
31 H 0.113 0.887
32 H 0.101 0.899
33 H 0.061 0.939
34 H 0.108 0.892
35 H 0.080 0.920
36 H 0.098 0.902
37 H 0.114 0.886
38 H 0.117 0.883
39 H 0.079 0.921
40 H 0.075 0.925
41 H 0.112 0.888
42 H 0.083 0.917
43 H 0.080 0.920
44 H 0.088 0.912
45 H 0.097 0.903
46 H 0.087 0.913
47 H 0.055 0.945
48 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -10.608 -23.013 2.909 25.507
hybrid contribution 0.425 1.814 -0.209 1.874
sum -10.183 -21.199 2.700 23.673
Atomic orbital electron populations
1.21632 0.81476 1.02619 1.00299 1.48158 1.06166 1.07900 1.71265
1.19278 0.92521 0.78129 0.97492 1.21396 1.36600 1.06301 0.92277
0.92524 1.24940 0.95331 0.96382 0.97467 1.69921 1.38336 1.14376
1.30823 0.86553 0.78377 0.77831 0.84628 1.20231 1.21161 1.20149
1.20271 0.88069 0.85144 0.77492 1.90670 1.13975 1.87339 1.50320
1.21731 0.99346 0.93060 1.03811 1.21986 0.94895 0.86239 1.02245
1.61530 1.12475 1.02630 1.49413 1.21761 0.96634 0.91680 0.97482
1.22719 1.01071 0.99799 1.02427 1.86256 1.13689 1.15947 1.86020
1.22544 0.94421 0.96500 0.97868 1.22305 1.03594 0.98903 0.96676
1.21749 0.95570 0.99176 1.02389 1.21846 1.01163 0.95603 0.96685
1.22439 0.94779 0.96919 0.93716 0.93868 0.90797 0.92397 0.95074
0.93902 0.92647 0.88661 0.89884 0.93902 0.89217 0.92045 0.90177
0.88553 0.88282 0.92092 0.92484 0.88779 0.91659 0.92027 0.91228
0.90321 0.91306 0.94490 0.90698
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.29 10.24 59.85 0.61 1.90 16
2 N -0.60 -12.63 2.86 -182.96 -0.52 -13.15 16
3 C 0.25 6.42 5.16 -5.20 -0.03 6.40 16
4 C -0.53 -14.99 9.39 -34.44 -0.32 -15.32 16
5 H 0.06 1.61 7.81 -52.48 -0.41 1.20 16
6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16
7 N -0.90 -26.71 13.29 55.43 0.74 -25.98 16
8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16
9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16
11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
12 C 0.50 10.19 7.67 -10.99 -0.08 10.10 16
13 O -0.54 -13.46 15.49 5.55 0.09 -13.38 16
14 C -0.14 -1.93 3.54 -27.88 -0.10 -2.03 16
15 C 0.07 0.97 4.05 -3.82 -0.02 0.96 16
16 N -0.54 -5.60 2.61 -236.50 -0.62 -6.22 16
17 C 0.06 0.55 5.49 -6.02 -0.03 0.52 16
18 C -0.11 -1.07 5.24 36.79 0.19 -0.88 16
19 S -0.25 -2.43 20.78 -107.50 -2.23 -4.66 16
20 C 0.00 -0.03 0.88 -91.82 -0.08 -0.12 16
21 C -0.16 -1.33 7.32 37.16 0.27 -1.06 16
22 C -0.13 -0.89 8.31 37.16 0.31 -0.58 16
23 C -0.11 -0.90 4.41 -27.00 -0.12 -1.02 16
24 C 0.05 0.44 3.23 -2.72 -0.01 0.44 16
25 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16
26 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16
27 H 0.06 0.72 6.44 -51.93 -0.33 0.38 16
28 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16
29 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16
30 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16
31 H 0.10 1.22 7.40 -51.93 -0.38 0.84 16
32 H 0.08 0.98 6.85 -51.93 -0.36 0.62 16
33 H 0.04 0.60 8.13 -51.93 -0.42 0.18 16
34 H 0.09 1.35 7.95 -51.93 -0.41 0.94 16
35 H 0.06 0.61 6.33 -51.93 -0.33 0.28 16
36 H 0.08 0.80 7.62 -51.93 -0.40 0.41 16
37 H 0.10 0.87 8.14 -48.91 -0.40 0.48 16
38 H 0.10 1.04 6.33 -48.90 -0.31 0.73 16
39 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
41 H 0.09 0.93 4.34 -51.93 -0.23 0.71 16
42 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16
43 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
44 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16
45 H 0.08 0.52 7.67 -51.93 -0.40 0.12 16
46 H 0.07 0.59 6.80 -51.93 -0.35 0.24 16
47 H 0.04 0.35 7.94 -51.93 -0.41 -0.06 16
48 H 0.07 0.66 6.76 -51.93 -0.35 0.30 16
LS Contribution 373.42 15.07 5.63 5.63
Total: -1.00 -32.24 373.42 -9.83 -42.07
By element:
Atomic # 1 Polarization: 6.22 SS G_CDS: -8.38 Total: -2.16 kcal
Atomic # 6 Polarization: 0.47 SS G_CDS: 0.50 Total: 0.97 kcal
Atomic # 7 Polarization: -44.95 SS G_CDS: -0.40 Total: -45.35 kcal
Atomic # 8 Polarization: -13.46 SS G_CDS: 0.09 Total: -13.38 kcal
Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal
Atomic # 16 Polarization: -2.43 SS G_CDS: -2.23 Total: -4.66 kcal
Total LS contribution 5.63 Total: 5.63 kcal
Total: -32.24 -9.83 -42.07 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228088702.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 11.707 kcal
(2) G-P(sol) polarization free energy of solvation -32.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.535 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.071 kcal
(6) G-S(sol) free energy of system = (1) + (5) -30.364 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds