Wall clock time and date at job start Tue Mar 31 2020 11:21:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46504 * 1
3 3 C 1.46493 * 120.00164 * 2 1
4 4 C 1.50700 * 109.47411 * 270.00372 * 3 2 1
5 5 H 1.08003 * 119.99611 * 359.97438 * 4 3 2
6 6 C 1.37877 * 120.00182 * 180.02562 * 4 3 2
7 7 N 1.31511 * 120.00003 * 359.97438 * 6 4 3
8 8 Si 1.86796 * 120.00012 * 180.02562 * 6 4 3
9 9 H 1.48499 * 109.47382 * 59.99666 * 8 6 4
10 10 H 1.48507 * 109.47242 * 179.97438 * 8 6 4
11 11 H 1.48501 * 109.47166 * 299.99393 * 8 6 4
12 12 C 1.34774 * 119.99726 * 180.02562 * 2 1 3
13 13 O 1.21284 * 119.99772 * 179.97438 * 12 2 1
14 14 C 1.50700 * 120.00498 * 359.97438 * 12 2 1
15 15 C 1.53000 * 109.47391 * 180.02562 * 14 12 2
16 16 N 1.46899 * 109.46972 * 185.21758 * 15 14 12
17 17 C 1.43450 * 110.99904 * 184.09620 * 16 15 14
18 18 C 1.52283 * 104.89926 * 224.81302 * 17 16 15
19 19 S 1.74917 * 114.46444 * 267.14063 * 18 17 16
20 20 C 1.84975 * 101.42073 * 61.57099 * 19 18 17
21 21 C 1.52999 * 109.56175 * 53.10868 * 20 19 18
22 22 C 1.53001 * 109.55655 * 173.31882 * 20 19 18
23 23 C 1.50605 * 109.03376 * 293.21023 * 20 19 18
24 24 C 1.47215 * 110.99874 * 308.57405 * 16 15 14
25 25 H 1.09005 * 109.46856 * 269.99627 * 1 2 3
26 26 H 1.08995 * 109.47245 * 29.99541 * 1 2 3
27 27 H 1.08994 * 109.47153 * 149.99578 * 1 2 3
28 28 H 1.09006 * 109.47248 * 30.00059 * 3 2 1
29 29 H 1.09000 * 109.47236 * 149.99971 * 3 2 1
30 30 H 0.97001 * 120.00217 * 180.02562 * 7 6 4
31 31 H 1.08998 * 109.47212 * 59.99711 * 14 12 2
32 32 H 1.09006 * 109.46650 * 300.00124 * 14 12 2
33 33 H 1.08998 * 109.47386 * 65.21500 * 15 14 12
34 34 H 1.09004 * 109.46448 * 305.21012 * 15 14 12
35 35 H 1.09001 * 110.34938 * 105.97253 * 17 16 15
36 36 H 1.08998 * 110.48303 * 343.72576 * 17 16 15
37 37 H 1.09002 * 108.48325 * 145.84572 * 18 17 16
38 38 H 1.09003 * 108.48461 * 28.42931 * 18 17 16
39 39 H 1.08995 * 109.47515 * 180.21373 * 21 20 19
40 40 H 1.09000 * 109.47106 * 60.20612 * 21 20 19
41 41 H 1.09001 * 109.47134 * 300.21193 * 21 20 19
42 42 H 1.09004 * 109.47423 * 299.78388 * 22 20 19
43 43 H 1.09000 * 109.47229 * 59.78294 * 22 20 19
44 44 H 1.08996 * 109.47372 * 179.78221 * 22 20 19
45 45 H 1.09001 * 108.03882 * 210.98654 * 23 20 19
46 46 H 1.09003 * 108.03802 * 327.43758 * 23 20 19
47 47 H 1.09000 * 107.84693 * 315.36440 * 24 16 15
48 48 H 1.09001 * 107.84911 * 71.36157 * 24 16 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2686 0.0000
4 6 2.4487 1.7038 -1.4208
5 1 2.0980 1.0958 -2.2417
6 6 3.1269 2.8775 -1.6727
7 7 3.5543 3.6175 -0.6731
8 14 3.4376 3.4171 -3.4338
9 1 2.1398 3.5956 -4.1332
10 1 4.1802 4.7032 -3.4338
11 1 4.2393 2.3821 -4.1346
12 6 2.1389 -1.1672 -0.0005
13 8 3.3517 -1.1672 -0.0010
14 6 1.3854 -2.4723 -0.0005
15 6 2.3796 -3.6353 -0.0005
16 7 1.6495 -4.9037 -0.1265
17 6 2.5427 -6.0224 -0.0348
18 6 2.1168 -6.9568 -1.1593
19 16 0.9592 -8.1796 -0.6856
20 6 -0.4732 -7.1396 -0.1487
21 6 -0.8387 -6.1567 -1.2627
22 6 -1.6733 -8.0385 0.1553
23 6 -0.0883 -6.3761 1.0912
24 6 0.5717 -4.9934 0.8724
25 1 -0.3633 -0.0001 1.0277
26 1 -0.3633 0.8900 -0.5137
27 1 -0.3633 -0.8899 -0.5139
28 1 1.6085 2.0284 0.5139
29 1 3.1499 1.1383 0.5138
30 1 4.0312 4.4434 -0.8503
31 1 0.7584 -2.5299 -0.8902
32 1 0.7591 -2.5302 0.8898
33 1 2.9432 -3.6315 0.9324
34 1 3.0661 -3.5263 -0.8402
35 1 2.4334 -6.5166 0.9305
36 1 3.5738 -5.7000 -0.1800
37 1 3.0045 -7.4541 -1.5503
38 1 1.6799 -6.3585 -1.9589
39 1 -1.6803 -5.5421 -0.9434
40 1 -1.1132 -6.7107 -2.1604
41 1 0.0172 -5.5170 -1.4782
42 1 -1.9483 -8.5933 -0.7419
43 1 -1.4115 -8.7382 0.9490
44 1 -2.5153 -7.4247 0.4752
45 1 -0.9864 -6.2336 1.6922
46 1 0.6042 -6.9917 1.6653
47 1 0.9743 -4.6606 1.8290
48 1 -0.2119 -4.2936 0.5821
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000228088702.mol2 48
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:21:06
Heat of formation + Delta-G solvation = -49.406650 kcal
Electronic energy + Delta-G solvation = -25067.862530 eV
Core-core repulsion = 21669.274469 eV
Total energy + Delta-G solvation = -3398.588061 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 314.177 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-40.89646 -39.83979 -36.84576 -36.51546 -34.76861 -33.55766 -31.39257 -30.13434
-28.97745 -28.20131 -27.26744 -25.49158 -24.98101 -23.55096 -22.27909 -20.35804
-19.79098 -18.70757 -18.15070 -17.53267 -17.14427 -16.93636 -16.61912 -16.28117
-16.06168 -15.69524 -15.56772 -14.97964 -14.48673 -14.43479 -14.23730 -13.93787
-13.68116 -13.65743 -13.50789 -13.42634 -13.22061 -12.96828 -12.88777 -12.84376
-12.73561 -12.52640 -12.36171 -12.29345 -12.19629 -11.88631 -11.80413 -11.72820
-11.51702 -11.46908 -10.65328 -10.62882 -10.47478 -9.42066 -9.31726 -8.56651
-8.23424 -6.38589 0.95315 1.36016 1.40258 1.47579 1.66356 1.84290
2.28545 2.41974 2.90356 3.06074 3.61379 3.81351 3.82218 3.92342
3.99072 4.13995 4.19968 4.24900 4.30121 4.34483 4.41256 4.45963
4.59510 4.70905 4.72412 4.78422 4.83187 4.86348 4.87923 4.95189
4.96731 4.98624 5.03792 5.06881 5.07960 5.15723 5.22188 5.25524
5.33027 5.55284 5.57718 5.83628 5.98891 6.05210 6.16408 6.68796
6.79677 7.27464 7.48718 8.83445
Molecular weight = 314.18amu
Principal moments of inertia in cm(-1)
A = 0.024333 B = 0.002711 C = 0.002656
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1150.405815 B =10327.417391 C =10541.153528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.611 5.611
3 C 0.258 3.742
4 C -0.544 4.544
5 H 0.054 0.946
6 C 0.007 3.993
7 N -0.930 5.930
8 Si 0.968 3.032
9 H -0.259 1.259
10 H -0.278 1.278
11 H -0.278 1.278
12 C 0.493 3.507
13 O -0.602 6.602
14 C -0.117 4.117
15 C 0.083 3.917
16 N -0.529 5.529
17 C 0.057 3.943
18 C -0.101 4.101
19 S -0.275 6.275
20 C 0.003 3.997
21 C -0.153 4.153
22 C -0.128 4.128
23 C -0.109 4.109
24 C 0.045 3.955
25 H 0.071 0.929
26 H 0.063 0.937
27 H 0.096 0.904
28 H 0.023 0.977
29 H -0.004 1.004
30 H 0.267 0.733
31 H 0.117 0.883
32 H 0.116 0.884
33 H 0.029 0.971
34 H 0.065 0.935
35 H 0.064 0.936
36 H 0.074 0.926
37 H 0.098 0.902
38 H 0.091 0.909
39 H 0.075 0.925
40 H 0.052 0.948
41 H 0.080 0.920
42 H 0.061 0.939
43 H 0.061 0.939
44 H 0.088 0.912
45 H 0.101 0.899
46 H 0.061 0.939
47 H 0.036 0.964
48 H 0.087 0.913
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.911 -23.116 2.852 27.129
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 N -0.342 5.342
3 C 0.137 3.863
4 C -0.582 4.582
5 H 0.072 0.928
6 C -0.192 4.192
7 N -0.569 5.569
8 Si 0.792 3.208
9 H -0.183 1.183
10 H -0.203 1.203
11 H -0.203 1.203
12 C 0.282 3.718
13 O -0.484 6.484
14 C -0.157 4.157
15 C -0.045 4.045
16 N -0.254 5.254
17 C -0.074 4.074
18 C -0.251 4.251
19 S -0.048 6.048
20 C -0.106 4.106
21 C -0.212 4.212
22 C -0.187 4.187
23 C -0.148 4.148
24 C -0.082 4.082
25 H 0.089 0.911
26 H 0.082 0.918
27 H 0.115 0.885
28 H 0.041 0.959
29 H 0.014 0.986
30 H 0.076 0.924
31 H 0.135 0.865
32 H 0.134 0.866
33 H 0.047 0.953
34 H 0.083 0.917
35 H 0.082 0.918
36 H 0.092 0.908
37 H 0.116 0.884
38 H 0.109 0.891
39 H 0.094 0.906
40 H 0.071 0.929
41 H 0.099 0.901
42 H 0.080 0.920
43 H 0.080 0.920
44 H 0.107 0.893
45 H 0.119 0.881
46 H 0.080 0.920
47 H 0.054 0.946
48 H 0.106 0.894
Dipole moment (debyes) X Y Z Total
from point charges -13.309 -24.072 2.412 27.612
hybrid contribution 1.221 2.095 0.005 2.425
sum -12.087 -21.977 2.417 25.198
Atomic orbital electron populations
1.21945 0.77740 1.04082 1.02607 1.48198 1.08501 1.06376 1.71154
1.18735 0.91054 0.80577 0.95961 1.21689 1.36884 1.06568 0.93083
0.92817 1.25877 0.94887 0.96442 1.02030 1.70044 1.38906 1.14831
1.33145 0.85470 0.78902 0.77343 0.79120 1.18337 1.20349 1.20335
1.21398 0.87797 0.86762 0.75806 1.90640 1.16822 1.88273 1.52671
1.21644 0.98902 0.88951 1.06232 1.21754 0.94618 0.87568 1.00550
1.61542 1.12405 1.01317 1.50109 1.21749 0.96352 0.91524 0.97744
1.22592 1.01140 0.99451 1.01880 1.86368 1.15069 1.17095 1.86220
1.22629 0.93775 0.96341 0.97860 1.22261 1.03493 0.98794 0.96632
1.21756 0.95401 0.99205 1.02305 1.21818 1.01813 0.94626 0.96588
1.22555 0.94389 0.98155 0.93146 0.91059 0.91767 0.88527 0.95914
0.98618 0.92382 0.86491 0.86596 0.95287 0.91679 0.91798 0.90807
0.88404 0.89086 0.90573 0.92932 0.90135 0.92007 0.92017 0.89339
0.88073 0.92005 0.94602 0.89423
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.20 10.24 127.77 1.31 3.51 16
2 N -0.61 -25.45 2.86 -851.14 -2.43 -27.88 16
3 C 0.26 14.01 5.16 85.63 0.44 14.46 16
4 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16
5 H 0.05 3.07 7.81 -2.91 -0.02 3.04 16
6 C 0.01 0.38 5.46 84.66 0.46 0.84 16
7 N -0.93 -56.66 13.29 21.45 0.28 -56.37 16
8 Si 0.97 45.04 29.54 68.60 2.03 47.07 16
9 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16
10 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16
11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16
12 C 0.49 19.92 7.67 87.66 0.67 20.59 16
13 O -0.60 -30.99 15.49 -3.04 -0.05 -31.04 16
14 C -0.12 -2.99 3.54 29.85 0.11 -2.89 16
15 C 0.08 2.14 4.05 86.30 0.35 2.49 16
16 N -0.53 -10.23 2.61 -902.14 -2.35 -12.58 16
17 C 0.06 1.10 5.49 86.71 0.48 1.57 16
18 C -0.10 -1.88 5.24 71.74 0.38 -1.51 16
19 S -0.28 -5.09 20.78 -56.49 -1.17 -6.26 16
20 C 0.00 0.04 0.88 -11.57 -0.01 0.03 16
21 C -0.15 -2.18 7.32 71.98 0.53 -1.65 16
22 C -0.13 -1.38 8.31 71.98 0.60 -0.79 16
23 C -0.11 -1.39 4.41 30.42 0.13 -1.25 16
24 C 0.04 0.68 3.23 86.85 0.28 0.96 16
25 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16
26 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16
27 H 0.10 1.97 6.44 -2.39 -0.02 1.95 16
28 H 0.02 1.25 8.07 -2.38 -0.02 1.23 16
29 H 0.00 -0.27 7.42 -2.39 -0.02 -0.29 16
30 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16
31 H 0.12 2.56 7.40 -2.39 -0.02 2.54 16
32 H 0.12 2.25 6.85 -2.38 -0.02 2.24 16
33 H 0.03 0.82 8.13 -2.39 -0.02 0.80 16
34 H 0.06 2.00 7.95 -2.38 -0.02 1.98 16
35 H 0.06 1.20 6.33 -2.39 -0.02 1.18 16
36 H 0.07 1.50 7.62 -2.39 -0.02 1.49 16
37 H 0.10 1.76 8.14 -4.30 -0.04 1.72 16
38 H 0.09 1.85 6.33 -4.31 -0.03 1.82 16
39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16
40 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16
41 H 0.08 1.40 4.34 -2.39 -0.01 1.39 16
42 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16
43 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
44 H 0.09 0.65 8.07 -2.39 -0.02 0.63 16
45 H 0.10 0.89 7.67 -2.39 -0.02 0.87 16
46 H 0.06 0.91 6.80 -2.39 -0.02 0.89 16
47 H 0.04 0.58 7.94 -2.39 -0.02 0.56 16
48 H 0.09 1.13 6.76 -2.39 -0.02 1.11 16
Total: -1.00 -73.55 373.42 3.16 -70.39
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: 0.89 Total: 11.60 kcal
Atomic # 6 Polarization: -0.89 SS G_CDS: 5.96 Total: 5.07 kcal
Atomic # 7 Polarization: -92.34 SS G_CDS: -4.50 Total: -96.84 kcal
Atomic # 8 Polarization: -30.99 SS G_CDS: -0.05 Total: -31.04 kcal
Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal
Atomic # 16 Polarization: -5.09 SS G_CDS: -1.17 Total: -6.26 kcal
Total: -73.55 3.16 -70.39 kcal
The number of atoms in the molecule is 48
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228088702.mol2 48
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 20.985 kcal
(2) G-P(sol) polarization free energy of solvation -73.553 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.568 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.391 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds