Wall clock time and date at job start Tue Mar 31 2020 10:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99877 * 2 1 4 4 C 1.38211 * 119.99609 * 180.23064 * 3 2 1 5 5 C 1.38264 * 119.99918 * 359.81600 * 4 3 2 6 6 C 1.38206 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99653 * 179.79829 * 2 1 3 8 8 C 1.50706 * 120.00315 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.46702 * 353.98663 * 8 7 2 10 10 C 1.52998 * 109.46975 * 113.98876 * 8 7 2 11 11 C 1.53005 * 109.46806 * 233.98614 * 8 7 2 12 12 C 1.50700 * 109.46535 * 174.99957 * 11 8 7 13 13 O 1.21283 * 120.00084 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99783 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47171 * 89.99975 * 15 14 12 17 17 H 1.08004 * 120.00294 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99854 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46787 * 89.99596 * 20 18 16 22 22 H 1.48496 * 109.47243 * 209.99107 * 20 18 16 23 23 H 1.48500 * 109.47184 * 329.99904 * 20 18 16 24 24 C 1.46495 * 119.99972 * 359.97438 * 14 12 11 25 25 C 1.53007 * 109.47024 * 90.00288 * 24 14 12 26 26 C 1.47198 * 109.47065 * 180.02562 * 25 24 14 27 27 N 7.73872 * 107.04745 * 124.19124 * 2 1 3 28 28 H 1.08999 * 109.46997 * 264.60143 * 1 2 3 29 29 H 1.09002 * 109.47021 * 24.60301 * 1 2 3 30 30 H 1.08997 * 109.46897 * 144.60025 * 1 2 3 31 31 H 1.07997 * 120.00324 * 0.07353 * 3 2 1 32 32 H 1.08003 * 120.00242 * 179.84390 * 4 3 2 33 33 H 1.08004 * 119.99734 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.99973 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46524 * 299.99601 * 10 8 7 36 36 H 1.08995 * 109.47508 * 59.99772 * 10 8 7 37 37 H 1.08997 * 109.47104 * 180.02562 * 10 8 7 38 38 H 1.08993 * 109.47170 * 55.00466 * 11 8 7 39 39 H 1.08992 * 109.46966 * 294.99766 * 11 8 7 40 40 H 1.08996 * 109.47433 * 210.00135 * 15 14 12 41 41 H 1.09003 * 109.47467 * 330.00220 * 15 14 12 42 42 H 0.96995 * 119.99973 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47316 * 209.99801 * 24 14 12 44 44 H 1.09001 * 109.47241 * 330.00427 * 24 14 12 45 45 H 1.08998 * 109.46677 * 299.99905 * 25 24 14 46 46 H 1.08994 * 109.47211 * 59.99701 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0042 8 6 1.4445 -2.5021 0.0094 9 1 0.3779 -2.3053 0.1167 10 6 1.6969 -3.2419 -1.3058 11 6 1.9246 -3.3635 1.1793 12 6 1.0878 -4.6143 1.2585 13 8 0.1951 -4.7984 0.4584 14 7 1.3314 -5.5284 2.2186 15 6 0.5183 -6.7445 2.2953 16 6 1.1514 -7.8257 1.4578 17 1 2.0676 -7.6267 0.9216 18 6 0.5604 -9.0687 1.3752 19 7 -0.5555 -9.3109 2.0276 20 14 1.3448 -10.4086 0.3365 21 1 2.2936 -11.1895 1.1703 22 1 0.2883 -11.3109 -0.1877 23 1 2.0762 -9.7907 -0.7986 24 6 2.4101 -5.3062 3.1846 25 6 1.8606 -4.5539 4.3985 26 6 2.9446 -4.3302 5.3689 27 7 3.7758 -4.1578 6.1200 28 1 -0.3633 -0.0967 1.0231 29 1 -0.3633 0.9344 -0.4279 30 1 -0.3633 -0.8377 -0.5953 31 1 1.6584 2.1326 0.0012 32 1 4.1205 2.1326 -0.0074 33 1 5.3517 -0.0002 -0.0091 34 1 4.1206 -2.1324 -0.0018 35 1 1.3549 -2.6282 -2.1393 36 1 2.7636 -3.4386 -1.4132 37 1 1.1516 -4.1856 -1.3023 38 1 1.8270 -2.8016 2.1082 39 1 2.9692 -3.6342 1.0264 40 1 0.4578 -7.0764 3.3317 41 1 -0.4841 -6.5357 1.9215 42 1 -0.9710 -10.1855 1.9698 43 1 2.8145 -6.2664 3.5049 44 1 3.1995 -4.7166 2.7186 45 1 1.4562 -3.5938 4.0782 46 1 1.0712 -5.1434 4.8645 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265298426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:21 Heat of formation + Delta-G solvation = -2.206298 kcal Electronic energy + Delta-G solvation = -25945.275848 eV Core-core repulsion = 22413.290596 eV Total energy + Delta-G solvation = -3531.985252 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.10650 -39.06670 -36.92858 -35.51628 -34.72986 -32.92450 -32.73860 -30.83516 -29.95654 -28.37058 -26.90809 -26.55925 -24.00164 -23.80653 -22.67062 -21.44623 -19.92481 -18.35918 -17.61878 -16.93018 -16.45703 -16.11083 -15.89022 -15.23644 -14.89237 -14.76491 -14.62274 -14.22961 -13.93237 -13.80824 -13.67233 -13.16969 -13.05081 -12.80639 -12.66897 -12.46321 -12.42662 -12.26124 -12.14486 -11.94831 -11.82437 -11.53580 -11.31578 -11.31087 -11.01752 -10.97166 -10.83960 -10.67497 -10.54556 -10.37560 -10.18046 -9.70568 -8.94434 -8.82158 -8.59114 -8.47776 -7.82812 -6.09357 -4.13837 1.29789 1.32835 2.75581 2.83850 3.27636 3.31382 3.35403 3.39982 3.63179 3.72389 4.20984 4.41010 4.70777 4.71357 4.87574 4.92343 5.01125 5.11567 5.12296 5.20216 5.22569 5.25342 5.31042 5.43903 5.49036 5.55140 5.58112 5.65401 5.76656 5.78281 5.85049 5.92006 6.00612 6.09195 6.11034 6.20603 6.28369 6.44200 6.46893 6.65121 6.73055 6.95124 6.96901 7.36835 7.44161 7.58641 7.86909 8.17363 8.28202 8.84430 9.00552 9.51798 10.98736 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003745 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.798087 B = 7475.640022 C = 8715.509568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.082 4.082 3 C -0.121 4.121 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.111 4.111 7 C -0.070 4.070 8 C -0.041 4.041 9 H 0.092 0.908 10 C -0.148 4.148 11 C -0.136 4.136 12 C 0.508 3.492 13 O -0.530 6.530 14 N -0.598 5.598 15 C 0.245 3.755 16 C -0.528 4.528 17 H 0.058 0.942 18 C 0.063 3.937 19 N -0.894 5.894 20 Si 0.896 3.104 21 H -0.281 1.281 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.118 3.882 25 C -0.051 4.051 26 C 0.218 3.782 27 N -0.446 5.446 28 H 0.071 0.929 29 H 0.062 0.938 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.117 0.883 33 H 0.118 0.882 34 H 0.122 0.878 35 H 0.048 0.952 36 H 0.047 0.953 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.033 0.967 41 H 0.046 0.954 42 H 0.263 0.737 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.241 18.560 -1.789 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.129 4.129 7 C -0.070 4.070 8 C -0.059 4.059 9 H 0.110 0.890 10 C -0.205 4.205 11 C -0.176 4.176 12 C 0.295 3.705 13 O -0.407 6.407 14 N -0.330 5.330 15 C 0.126 3.874 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.533 5.533 20 Si 0.724 3.276 21 H -0.207 1.207 22 H -0.211 1.211 23 H -0.199 1.199 24 C -0.008 4.008 25 C -0.093 4.093 26 C -0.100 4.100 27 N -0.123 5.123 28 H 0.090 0.910 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.136 0.864 32 H 0.135 0.865 33 H 0.136 0.864 34 H 0.139 0.861 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.106 0.894 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.094 0.906 45 H 0.124 0.876 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.840 18.542 -1.066 19.470 hybrid contribution 0.283 -0.850 -0.702 1.139 sum 6.123 17.692 -1.769 18.805 Atomic orbital electron populations 1.20874 0.91275 1.02801 1.02676 1.19814 0.96089 0.92548 0.99780 1.20997 0.94241 0.97302 1.01389 1.21075 0.94322 0.97900 1.01140 1.21101 0.99683 0.92593 1.01001 1.21032 0.93764 0.98082 1.00062 1.19855 0.93624 0.94483 0.99029 1.19977 1.00217 0.90413 0.95311 0.89005 1.21950 1.01471 1.01937 0.95156 1.21845 1.00696 0.95239 0.99859 1.20339 0.84715 0.84228 0.81199 1.90650 1.32593 1.77880 1.39545 1.48227 1.33908 1.22147 1.28673 1.19328 0.91408 0.79300 0.97384 1.21419 1.09617 0.96056 1.29556 0.92405 1.24914 0.94844 0.98520 0.95691 1.69915 1.18152 1.22939 1.42252 0.86533 0.78944 0.81565 0.80607 1.20680 1.21120 1.19879 1.21288 0.90189 1.01269 0.88100 1.19908 0.92780 1.03958 0.92626 1.29005 0.94262 0.92874 0.93876 1.81095 1.11102 1.09365 1.10761 0.91034 0.91863 0.90671 0.86395 0.86506 0.86396 0.86053 0.93263 0.93389 0.89515 0.89577 0.89354 0.94881 0.93562 0.92691 0.88879 0.90640 0.87597 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.14 36.01 0.33 -0.80 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 3 C -0.12 -1.19 9.68 -39.58 -0.38 -1.57 16 4 C -0.13 -1.19 10.05 -39.58 -0.40 -1.59 16 5 C -0.13 -1.24 10.05 -39.58 -0.40 -1.63 16 6 C -0.11 -1.20 8.79 -39.59 -0.35 -1.55 16 7 C -0.07 -0.80 4.78 -104.62 -0.50 -1.30 16 8 C -0.04 -0.52 1.94 -91.77 -0.18 -0.69 16 9 H 0.09 1.24 5.54 -51.93 -0.29 0.95 16 10 C -0.15 -2.05 8.80 37.16 0.33 -1.72 16 11 C -0.14 -1.73 3.39 -27.88 -0.09 -1.82 16 12 C 0.51 8.92 7.39 -10.98 -0.08 8.84 16 13 O -0.53 -11.51 13.55 5.55 0.08 -11.43 16 14 N -0.60 -10.64 2.46 -175.06 -0.43 -11.07 16 15 C 0.24 5.69 5.16 -5.20 -0.03 5.67 16 16 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 17 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 20 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 24 C 0.12 1.55 5.17 -4.04 -0.02 1.53 16 25 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 26 C 0.22 2.66 15.42 -20.84 -0.32 2.34 16 27 N -0.45 -6.61 18.52 42.06 0.78 -5.83 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.50 8.05 -51.93 -0.42 0.08 16 30 H 0.07 0.76 6.54 -51.93 -0.34 0.42 16 31 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 32 H 0.12 0.86 8.06 -52.48 -0.42 0.43 16 33 H 0.12 0.94 8.06 -52.48 -0.42 0.51 16 34 H 0.12 1.20 7.18 -52.49 -0.38 0.82 16 35 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.61 7.75 -51.93 -0.40 0.21 16 37 H 0.09 1.48 5.95 -51.93 -0.31 1.17 16 38 H 0.09 0.91 7.19 -51.93 -0.37 0.54 16 39 H 0.09 1.02 6.54 -51.93 -0.34 0.68 16 40 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 41 H 0.05 1.23 7.42 -51.93 -0.39 0.85 16 42 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.09 1.32 8.07 -51.93 -0.42 0.90 16 44 H 0.08 0.83 6.44 -51.93 -0.33 0.50 16 45 H 0.11 0.91 7.22 -51.93 -0.37 0.54 16 46 H 0.12 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 381.86 15.07 5.75 5.75 Total: -1.00 -31.85 381.86 -8.27 -40.12 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.86 Total: 0.14 kcal Atomic # 6 Polarization: -5.85 SS G_CDS: -3.31 Total: -9.15 kcal Atomic # 7 Polarization: -42.57 SS G_CDS: 1.09 Total: -41.49 kcal Atomic # 8 Polarization: -11.51 SS G_CDS: 0.08 Total: -11.43 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.85 -8.27 -40.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265298426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.916 kcal (2) G-P(sol) polarization free energy of solvation -31.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds