Wall clock time and date at job start Tue Mar 31 2020 10:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38256 * 119.99877 * 2 1 4 4 C 1.38211 * 119.99609 * 180.23064 * 3 2 1 5 5 C 1.38264 * 119.99918 * 359.81600 * 4 3 2 6 6 C 1.38206 * 120.00075 * 359.97438 * 5 4 3 7 7 C 1.38211 * 119.99653 * 179.79829 * 2 1 3 8 8 C 1.50706 * 120.00315 * 359.97438 * 7 2 1 9 9 H 1.08994 * 109.46702 * 353.98663 * 8 7 2 10 10 C 1.52998 * 109.46975 * 113.98876 * 8 7 2 11 11 C 1.53005 * 109.46806 * 233.98614 * 8 7 2 12 12 C 1.50700 * 109.46535 * 174.99957 * 11 8 7 13 13 O 1.21283 * 120.00084 * 359.97438 * 12 11 8 14 14 N 1.34782 * 119.99783 * 179.97438 * 12 11 8 15 15 C 1.46495 * 119.99839 * 180.02562 * 14 12 11 16 16 C 1.50697 * 109.47171 * 89.99975 * 15 14 12 17 17 H 1.08004 * 120.00294 * 359.97438 * 16 15 14 18 18 C 1.37886 * 120.00059 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99854 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99954 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46787 * 89.99596 * 20 18 16 22 22 H 1.48496 * 109.47243 * 209.99107 * 20 18 16 23 23 H 1.48500 * 109.47184 * 329.99904 * 20 18 16 24 24 C 1.46495 * 119.99972 * 359.97438 * 14 12 11 25 25 C 1.53007 * 109.47024 * 90.00288 * 24 14 12 26 26 C 1.47198 * 109.47065 * 180.02562 * 25 24 14 27 27 N 7.73872 * 107.04745 * 124.19124 * 2 1 3 28 28 H 1.08999 * 109.46997 * 264.60143 * 1 2 3 29 29 H 1.09002 * 109.47021 * 24.60301 * 1 2 3 30 30 H 1.08997 * 109.46897 * 144.60025 * 1 2 3 31 31 H 1.07997 * 120.00324 * 0.07353 * 3 2 1 32 32 H 1.08003 * 120.00242 * 179.84390 * 4 3 2 33 33 H 1.08004 * 119.99734 * 180.02562 * 5 4 3 34 34 H 1.08002 * 119.99973 * 180.02562 * 6 5 4 35 35 H 1.09007 * 109.46524 * 299.99601 * 10 8 7 36 36 H 1.08995 * 109.47508 * 59.99772 * 10 8 7 37 37 H 1.08997 * 109.47104 * 180.02562 * 10 8 7 38 38 H 1.08993 * 109.47170 * 55.00466 * 11 8 7 39 39 H 1.08992 * 109.46966 * 294.99766 * 11 8 7 40 40 H 1.08996 * 109.47433 * 210.00135 * 15 14 12 41 41 H 1.09003 * 109.47467 * 330.00220 * 15 14 12 42 42 H 0.96995 * 119.99973 * 180.02562 * 19 18 16 43 43 H 1.08998 * 109.47316 * 209.99801 * 24 14 12 44 44 H 1.09001 * 109.47241 * 330.00427 * 24 14 12 45 45 H 1.08998 * 109.46677 * 299.99905 * 25 24 14 46 46 H 1.08994 * 109.47211 * 59.99701 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 -0.0048 5 6 4.2717 -0.0002 -0.0058 6 6 3.5806 -1.1970 -0.0014 7 6 2.1981 -1.1970 0.0042 8 6 1.4445 -2.5021 0.0094 9 1 0.3779 -2.3053 0.1167 10 6 1.6969 -3.2419 -1.3058 11 6 1.9246 -3.3635 1.1793 12 6 1.0878 -4.6143 1.2585 13 8 0.1951 -4.7984 0.4584 14 7 1.3314 -5.5284 2.2186 15 6 0.5183 -6.7445 2.2953 16 6 1.1514 -7.8257 1.4578 17 1 2.0676 -7.6267 0.9216 18 6 0.5604 -9.0687 1.3752 19 7 -0.5555 -9.3109 2.0276 20 14 1.3448 -10.4086 0.3365 21 1 2.2936 -11.1895 1.1703 22 1 0.2883 -11.3109 -0.1877 23 1 2.0762 -9.7907 -0.7986 24 6 2.4101 -5.3062 3.1846 25 6 1.8606 -4.5539 4.3985 26 6 2.9446 -4.3302 5.3689 27 7 3.7758 -4.1578 6.1200 28 1 -0.3633 -0.0967 1.0231 29 1 -0.3633 0.9344 -0.4279 30 1 -0.3633 -0.8377 -0.5953 31 1 1.6584 2.1326 0.0012 32 1 4.1205 2.1326 -0.0074 33 1 5.3517 -0.0002 -0.0091 34 1 4.1206 -2.1324 -0.0018 35 1 1.3549 -2.6282 -2.1393 36 1 2.7636 -3.4386 -1.4132 37 1 1.1516 -4.1856 -1.3023 38 1 1.8270 -2.8016 2.1082 39 1 2.9692 -3.6342 1.0264 40 1 0.4578 -7.0764 3.3317 41 1 -0.4841 -6.5357 1.9215 42 1 -0.9710 -10.1855 1.9698 43 1 2.8145 -6.2664 3.5049 44 1 3.1995 -4.7166 2.7186 45 1 1.4562 -3.5938 4.0782 46 1 1.0712 -5.1434 4.8645 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265298426.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:30:20 Heat of formation + Delta-G solvation = -18.021607 kcal Electronic energy + Delta-G solvation = -25945.961651 eV Core-core repulsion = 22413.290596 eV Total energy + Delta-G solvation = -3532.671055 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.17257 -40.17372 -38.03950 -36.80667 -35.83787 -34.81361 -33.52912 -32.13891 -30.88050 -29.75173 -28.09876 -27.64108 -25.30929 -24.98183 -24.03246 -22.28461 -20.88309 -19.66206 -18.80255 -18.31703 -18.03181 -17.22553 -16.90547 -16.56827 -16.01246 -15.98477 -15.67145 -15.55636 -14.90592 -14.83832 -14.71851 -14.35935 -14.05212 -13.96228 -13.86115 -13.61353 -13.53111 -13.40218 -13.20200 -13.13785 -12.96253 -12.81419 -12.70287 -12.57495 -12.50465 -12.17326 -12.11808 -12.00486 -11.81303 -11.64867 -11.48154 -11.32015 -10.56533 -10.37719 -9.59505 -9.40830 -9.36925 -8.15991 -6.27947 0.53696 0.58591 1.40197 1.42557 1.51776 1.71997 1.86206 1.97446 2.33850 2.47574 2.93831 3.13400 3.17694 3.71140 3.85926 4.03848 4.10872 4.12909 4.14696 4.21520 4.27598 4.35661 4.53870 4.55624 4.58222 4.69592 4.74107 4.85500 4.85949 4.90237 4.94292 5.00175 5.05904 5.10488 5.19812 5.25235 5.35258 5.37974 5.40768 5.48356 5.65567 5.70905 5.73241 5.89489 5.92570 6.16249 6.23457 6.61258 6.79118 6.87023 7.37703 7.60017 8.90502 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012236 B = 0.003745 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.798087 B = 7475.640022 C = 8715.509568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.094 4.094 3 C -0.127 4.127 4 C -0.128 4.128 5 C -0.132 4.132 6 C -0.120 4.120 7 C -0.081 4.081 8 C -0.035 4.035 9 H 0.079 0.921 10 C -0.143 4.143 11 C -0.123 4.123 12 C 0.503 3.497 13 O -0.579 6.579 14 N -0.600 5.600 15 C 0.260 3.740 16 C -0.538 4.538 17 H 0.053 0.947 18 C 0.011 3.989 19 N -0.926 5.926 20 Si 0.956 3.044 21 H -0.268 1.268 22 H -0.285 1.285 23 H -0.273 1.273 24 C 0.114 3.886 25 C -0.039 4.039 26 C 0.246 3.754 27 N -0.488 5.488 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.052 0.948 36 H 0.057 0.943 37 H 0.049 0.951 38 H 0.116 0.884 39 H 0.108 0.892 40 H 0.031 0.969 41 H 0.004 0.996 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.105 0.895 45 H 0.135 0.865 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.185 20.481 -1.663 21.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.094 4.094 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.150 4.150 6 C -0.138 4.138 7 C -0.081 4.081 8 C -0.053 4.053 9 H 0.097 0.903 10 C -0.201 4.201 11 C -0.163 4.163 12 C 0.292 3.708 13 O -0.459 6.459 14 N -0.331 5.331 15 C 0.139 3.861 16 C -0.576 4.576 17 H 0.071 0.929 18 C -0.188 4.188 19 N -0.566 5.566 20 Si 0.781 3.219 21 H -0.193 1.193 22 H -0.211 1.211 23 H -0.198 1.198 24 C -0.011 4.011 25 C -0.080 4.080 26 C -0.071 4.071 27 N -0.166 5.166 28 H 0.093 0.907 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.135 0.865 39 H 0.126 0.874 40 H 0.049 0.951 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.123 0.877 45 H 0.153 0.847 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.823 20.486 -0.915 21.947 hybrid contribution -0.335 -1.388 -0.780 1.627 sum 7.488 19.098 -1.695 20.583 Atomic orbital electron populations 1.20873 0.90867 1.03019 1.02790 1.20007 0.96631 0.92833 0.99951 1.21264 0.94712 0.97645 1.00889 1.21415 0.94384 0.98828 0.99971 1.21379 1.00775 0.92358 1.00444 1.21176 0.93467 0.98947 1.00194 1.19702 0.93948 0.93727 1.00751 1.19844 0.99882 0.91152 0.94446 0.90256 1.21862 1.01447 1.00332 0.96431 1.21842 1.00354 0.92680 1.01413 1.21219 0.84388 0.85229 0.79924 1.90637 1.34904 1.79088 1.41308 1.48108 1.34395 1.20574 1.29975 1.18767 0.90159 0.80923 0.96246 1.21762 1.09377 0.96997 1.29505 0.92865 1.25710 0.95358 1.00853 0.96872 1.70022 1.19421 1.23492 1.43697 0.85587 0.78191 0.78961 0.79113 1.19337 1.21082 1.19831 1.21491 0.89465 1.01810 0.88301 1.19841 0.92036 1.05077 0.91048 1.29044 0.93498 0.91468 0.93117 1.81137 1.12376 1.11021 1.12112 0.90664 0.90381 0.92037 0.84589 0.84306 0.84550 0.85379 0.92870 0.92367 0.93222 0.86544 0.87362 0.95087 0.97753 0.92647 0.89982 0.87663 0.84744 0.86247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.10 9.14 71.24 0.65 -1.45 16 2 C -0.09 -1.85 5.88 -19.86 -0.12 -1.97 16 3 C -0.13 -2.14 9.68 22.27 0.22 -1.92 16 4 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 5 C -0.13 -2.17 10.05 22.27 0.22 -1.95 16 6 C -0.12 -2.26 8.79 22.27 0.20 -2.06 16 7 C -0.08 -1.71 4.78 -19.86 -0.10 -1.80 16 8 C -0.03 -0.85 1.94 -11.54 -0.02 -0.87 16 9 H 0.08 2.15 5.54 -2.39 -0.01 2.14 16 10 C -0.14 -4.00 8.80 71.98 0.63 -3.36 16 11 C -0.12 -2.89 3.39 29.85 0.10 -2.79 16 12 C 0.50 17.59 7.39 87.66 0.65 18.24 16 13 O -0.58 -26.20 13.55 -3.04 -0.04 -26.24 16 14 N -0.60 -21.17 2.46 -826.16 -2.03 -23.20 16 15 C 0.26 12.46 5.16 85.63 0.44 12.91 16 16 C -0.54 -28.86 9.39 25.60 0.24 -28.62 16 17 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 18 C 0.01 0.61 5.46 84.66 0.46 1.07 16 19 N -0.93 -53.66 13.29 21.45 0.28 -53.38 16 20 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 21 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 22 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 23 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 24 C 0.11 2.78 5.17 86.38 0.45 3.23 16 25 C -0.04 -0.72 6.03 28.79 0.17 -0.54 16 26 C 0.25 5.42 15.42 89.47 1.38 6.81 16 27 N -0.49 -13.63 18.52 19.97 0.37 -13.26 16 28 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 1.10 8.05 -2.39 -0.02 1.08 16 30 H 0.06 1.24 6.54 -2.39 -0.02 1.22 16 31 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 32 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 34 H 0.13 2.16 7.18 -2.91 -0.02 2.14 16 35 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 36 H 0.06 1.45 7.75 -2.39 -0.02 1.43 16 37 H 0.05 1.76 5.95 -2.39 -0.01 1.75 16 38 H 0.12 2.05 7.19 -2.39 -0.02 2.03 16 39 H 0.11 2.15 6.54 -2.39 -0.02 2.14 16 40 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 41 H 0.00 0.24 7.42 -2.39 -0.02 0.23 16 42 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 43 H 0.08 2.22 8.07 -2.39 -0.02 2.20 16 44 H 0.11 1.97 6.44 -2.39 -0.02 1.95 16 45 H 0.13 1.81 7.22 -2.39 -0.02 1.79 16 46 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 Total: -1.00 -71.65 381.86 7.39 -64.26 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 0.98 Total: 13.09 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: 5.80 Total: -6.86 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -1.37 Total: -89.84 kcal Atomic # 8 Polarization: -26.20 SS G_CDS: -0.04 Total: -26.24 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -71.65 7.39 -64.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265298426.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.235 kcal (2) G-P(sol) polarization free energy of solvation -71.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds