Wall clock time and date at job start Tue Mar 31 2020 11:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29454 * 117.69277 * 2 1 4 4 C 1.50321 * 123.64888 * 180.57537 * 3 2 1 5 5 N 1.47012 * 109.16699 * 349.28831 * 4 3 2 6 6 C 1.34777 * 121.37534 * 222.96484 * 5 4 3 7 7 O 1.21587 * 120.00116 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99859 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99739 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47355 * 34.99399 * 9 8 6 11 11 C 1.52998 * 109.47118 * 154.99599 * 9 8 6 12 12 C 1.50710 * 109.46970 * 294.99390 * 11 9 8 13 13 H 1.07997 * 119.99608 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99687 * 179.97438 * 12 11 9 15 15 N 1.31511 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99505 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47374 * 90.00370 * 16 14 12 18 18 H 1.48507 * 109.47180 * 209.99932 * 16 14 12 19 19 H 1.48500 * 109.47331 * 330.00143 * 16 14 12 20 20 C 1.50698 * 109.46717 * 274.99127 * 9 8 6 21 21 C 1.38235 * 120.00177 * 319.72837 * 20 9 8 22 22 C 1.38239 * 119.99749 * 179.81117 * 21 20 9 23 23 C 1.38234 * 120.00044 * 0.39189 * 22 21 20 24 24 C 1.38229 * 120.00025 * 359.86385 * 23 22 21 25 25 C 1.38228 * 120.00213 * 359.94935 * 24 23 22 26 26 C 1.47338 * 117.24734 * 42.94374 * 5 4 3 27 27 C 1.49960 * 117.68960 * 180.22860 * 2 1 3 28 28 H 1.09008 * 109.46785 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47091 * 119.99157 * 1 2 3 30 30 H 1.08996 * 109.46837 * 240.00028 * 1 2 3 31 31 H 1.08002 * 118.17956 * 0.86692 * 3 2 1 32 32 H 1.09007 * 109.52454 * 109.19157 * 4 3 2 33 33 H 1.09006 * 109.52704 * 229.38116 * 4 3 2 34 34 H 0.96993 * 119.99991 * 359.97438 * 8 6 5 35 35 H 1.08994 * 109.47243 * 54.99548 * 11 9 8 36 36 H 1.09004 * 109.47071 * 174.99869 * 11 9 8 37 37 H 0.97004 * 120.00310 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.99930 * 0.02562 * 21 20 9 39 39 H 1.08004 * 119.99585 * 180.23186 * 22 21 20 40 40 H 1.08004 * 119.99921 * 179.82838 * 23 22 21 41 41 H 1.08006 * 119.99692 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00076 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.77686 * 57.81520 * 26 5 4 44 44 H 1.09002 * 109.77323 * 178.61958 * 26 5 4 45 45 H 1.08998 * 109.44078 * 40.81493 * 27 2 1 46 46 H 1.09005 * 109.12801 * 281.42781 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1086 1.1463 0.0000 4 6 3.6037 1.3023 -0.0126 5 7 4.2276 -0.0059 0.2339 6 6 5.2795 -0.1359 1.0664 7 8 5.7759 -1.2301 1.2524 8 7 5.7805 0.9468 1.6935 9 6 6.9243 0.8055 2.5979 10 1 7.5941 0.0337 2.2188 11 6 7.6751 2.1359 2.6824 12 6 8.2692 2.4637 1.3367 13 1 8.1252 1.7907 0.5045 14 6 8.9955 3.6234 1.1679 15 7 9.1704 4.4432 2.1812 16 14 9.7313 4.0301 -0.5003 17 1 8.7551 4.8205 -1.2925 18 1 10.9738 4.8217 -0.3136 19 1 10.0499 2.7714 -1.2209 20 6 6.4351 0.4169 3.9693 21 6 5.2910 0.9964 4.4850 22 6 4.8401 0.6370 5.7414 23 6 5.5380 -0.2960 6.4854 24 6 6.6850 -0.8716 5.9718 25 6 7.1337 -0.5151 4.7140 26 6 3.6551 -1.1689 -0.4664 27 6 2.2039 -1.3279 -0.0053 28 1 -0.3633 1.0278 0.0005 29 1 -0.3633 -0.5137 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5028 2.0402 0.0144 32 1 3.9223 1.6805 -0.9840 33 1 3.9036 2.0017 0.7679 34 1 5.3842 1.8196 1.5454 35 1 6.9835 2.9254 2.9763 36 1 8.4720 2.0571 3.4219 37 1 9.6818 5.2590 2.0625 38 1 4.7474 1.7274 3.9049 39 1 3.9441 1.0870 6.1427 40 1 5.1873 -0.5747 7.4681 41 1 7.2304 -1.6002 6.5533 42 1 8.0297 -0.9651 4.3126 43 1 3.6838 -1.0020 -1.5431 44 1 4.2219 -2.0657 -0.2162 45 1 1.6836 -2.0079 -0.6798 46 1 2.1892 -1.7430 1.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270498126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:51 Heat of formation + Delta-G solvation = 7.935221 kcal Electronic energy + Delta-G solvation = -26462.466114 eV Core-core repulsion = 22930.920631 eV Total energy + Delta-G solvation = -3531.545482 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.16806 -38.87289 -37.57633 -35.16822 -33.90032 -32.71856 -31.51269 -30.57819 -30.31582 -28.83140 -28.10149 -24.95715 -24.08844 -23.40784 -22.23584 -21.90317 -20.48557 -19.62131 -18.35274 -16.98597 -16.68006 -16.16142 -15.99021 -15.28794 -14.87921 -14.68325 -14.63420 -14.45569 -14.04801 -13.93010 -13.50200 -13.38857 -13.16403 -12.94571 -12.74022 -12.55903 -12.43801 -12.07836 -12.01341 -11.81087 -11.53869 -11.40297 -11.10285 -10.87950 -10.71652 -10.70046 -10.58226 -10.40092 -9.74136 -9.62365 -9.26819 -8.91667 -8.59434 -8.48210 -8.43422 -8.18558 -8.10399 -6.07186 -4.10196 1.83344 1.85780 2.09006 3.01582 3.27517 3.35201 3.39775 3.71266 4.21563 4.40552 4.45948 4.63963 4.71643 5.04736 5.17612 5.26733 5.29506 5.30886 5.32755 5.39717 5.41861 5.43051 5.52748 5.58965 5.63172 5.67679 5.77998 5.92539 5.96190 5.98397 5.99706 6.19668 6.38699 6.42692 6.48008 6.62052 6.67858 6.84499 6.89604 6.90501 7.01214 7.16424 7.35402 7.46041 7.54221 7.70429 7.90092 8.28508 8.49599 8.95856 9.12808 9.54619 11.03361 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.005340 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.069133 B = 5242.049037 C = 7477.729817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.117 4.117 3 C -0.174 4.174 4 C 0.143 3.857 5 N -0.636 5.636 6 C 0.711 3.289 7 O -0.597 6.597 8 N -0.716 5.716 9 C 0.201 3.799 10 H 0.086 0.914 11 C 0.024 3.976 12 C -0.518 4.518 13 H 0.058 0.942 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.070 4.070 21 C -0.106 4.106 22 C -0.126 4.126 23 C -0.136 4.136 24 C -0.123 4.123 25 C -0.107 4.107 26 C 0.132 3.868 27 C -0.099 4.099 28 H 0.060 0.940 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.395 0.605 35 H 0.023 0.977 36 H 0.035 0.965 37 H 0.261 0.739 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.065 0.935 44 H 0.096 0.904 45 H 0.079 0.921 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 -7.459 -0.488 17.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.117 4.117 3 C -0.193 4.193 4 C 0.020 3.980 5 N -0.374 5.374 6 C 0.413 3.587 7 O -0.476 6.476 8 N -0.369 5.369 9 C 0.096 3.904 10 H 0.104 0.896 11 C -0.014 4.014 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.141 4.141 15 N -0.531 5.531 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.071 4.071 21 C -0.124 4.124 22 C -0.144 4.144 23 C -0.154 4.154 24 C -0.141 4.141 25 C -0.126 4.126 26 C 0.008 3.992 27 C -0.137 4.137 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.133 0.867 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.231 0.769 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.071 0.929 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.133 0.867 42 H 0.138 0.862 43 H 0.083 0.917 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.154 -8.075 -0.285 17.174 hybrid contribution 0.115 0.948 -0.917 1.324 sum -15.039 -7.127 -1.202 16.686 Atomic orbital electron populations 1.20981 0.92564 1.02253 1.01910 1.20732 0.95625 0.94983 1.00357 1.22276 0.95892 0.97703 1.03415 1.20402 0.90205 0.85463 1.01946 1.47268 1.33287 1.08385 1.48490 1.15812 0.79526 0.84950 0.78408 1.90854 1.62752 1.25569 1.68379 1.45274 1.35111 1.08711 1.47823 1.20127 0.85524 1.01816 0.82936 0.89563 1.19399 0.95141 0.88710 0.98122 1.21141 1.32883 1.05815 0.95749 0.92382 1.24977 0.96201 0.96337 0.96605 1.69959 1.40733 1.12094 1.30359 0.86607 0.78727 0.78413 0.84351 1.20734 1.21242 1.19868 1.20607 0.94586 0.94694 0.97239 1.20873 0.96594 0.99575 0.95364 1.21024 0.99843 0.98475 0.95045 1.20974 0.96405 0.98441 0.99575 1.21028 0.96895 1.00269 0.95939 1.21016 0.99896 0.97213 0.94479 1.21411 0.92472 0.89835 0.95454 1.20738 0.95525 0.94913 1.02520 0.92138 0.91799 0.91841 0.86705 0.90514 0.89432 0.76856 0.95833 0.94657 0.92911 0.86807 0.86876 0.86927 0.86662 0.86187 0.91670 0.88610 0.90294 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.97 9.96 36.01 0.36 -0.61 16 2 C -0.12 -1.21 5.86 -100.99 -0.59 -1.80 16 3 C -0.17 -1.86 9.50 -35.78 -0.34 -2.20 16 4 C 0.14 1.79 6.52 -5.10 -0.03 1.76 16 5 N -0.64 -9.69 2.97 -179.86 -0.53 -10.23 16 6 C 0.71 13.61 8.30 -86.91 -0.72 12.89 16 7 O -0.60 -13.38 15.49 5.29 0.08 -13.30 16 8 N -0.72 -13.59 3.95 -59.81 -0.24 -13.82 16 9 C 0.20 4.22 2.11 -69.08 -0.15 4.08 16 10 H 0.09 1.99 7.44 -51.93 -0.39 1.61 16 11 C 0.02 0.57 4.49 -27.88 -0.13 0.45 16 12 C -0.52 -13.79 8.84 -34.44 -0.30 -14.09 16 13 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 14 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 15 N -0.89 -25.61 13.29 55.43 0.74 -24.87 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 19 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 20 C -0.07 -1.34 4.91 -104.62 -0.51 -1.86 16 21 C -0.11 -1.85 9.32 -39.58 -0.37 -2.22 16 22 C -0.13 -1.94 10.05 -39.58 -0.40 -2.34 16 23 C -0.14 -2.00 10.05 -39.59 -0.40 -2.40 16 24 C -0.12 -1.92 10.05 -39.59 -0.40 -2.32 16 25 C -0.11 -1.94 9.67 -39.58 -0.38 -2.32 16 26 C 0.13 1.71 6.50 -3.53 -0.02 1.68 16 27 C -0.10 -1.06 5.96 -28.19 -0.17 -1.23 16 28 H 0.06 0.45 7.54 -51.92 -0.39 0.05 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.12 1.03 7.56 -52.49 -0.40 0.64 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.09 1.09 5.94 -51.93 -0.31 0.78 16 34 H 0.40 6.95 6.23 -40.82 -0.25 6.69 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.11 1.89 7.73 -52.49 -0.41 1.49 16 39 H 0.11 1.45 8.06 -52.48 -0.42 1.03 16 40 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 41 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 42 H 0.12 2.07 8.04 -52.48 -0.42 1.65 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 44 H 0.10 1.38 7.07 -51.93 -0.37 1.01 16 45 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 377.01 15.07 5.68 5.68 Total: -1.00 -31.78 377.01 -11.06 -42.84 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -7.12 Total: 8.59 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -4.65 Total: -10.98 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.03 Total: -48.92 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.08 Total: -13.30 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.78 -11.06 -42.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270498126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.777 kcal (2) G-P(sol) polarization free energy of solvation -31.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds