Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.29454 * 117.69277 * 2 1 4 4 C 1.50321 * 123.64888 * 180.57537 * 3 2 1 5 5 N 1.47012 * 109.16699 * 349.28831 * 4 3 2 6 6 C 1.34777 * 121.37534 * 222.96484 * 5 4 3 7 7 O 1.21587 * 120.00116 * 179.97438 * 6 5 4 8 8 N 1.34781 * 119.99859 * 0.02562 * 6 5 4 9 9 C 1.46502 * 119.99739 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47355 * 34.99399 * 9 8 6 11 11 C 1.52998 * 109.47118 * 154.99599 * 9 8 6 12 12 C 1.50710 * 109.46970 * 294.99390 * 11 9 8 13 13 H 1.07997 * 119.99608 * 0.02562 * 12 11 9 14 14 C 1.37874 * 119.99687 * 179.97438 * 12 11 9 15 15 N 1.31511 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99505 * 180.02562 * 14 12 11 17 17 H 1.48500 * 109.47374 * 90.00370 * 16 14 12 18 18 H 1.48507 * 109.47180 * 209.99932 * 16 14 12 19 19 H 1.48500 * 109.47331 * 330.00143 * 16 14 12 20 20 C 1.50698 * 109.46717 * 274.99127 * 9 8 6 21 21 C 1.38235 * 120.00177 * 319.72837 * 20 9 8 22 22 C 1.38239 * 119.99749 * 179.81117 * 21 20 9 23 23 C 1.38234 * 120.00044 * 0.39189 * 22 21 20 24 24 C 1.38229 * 120.00025 * 359.86385 * 23 22 21 25 25 C 1.38228 * 120.00213 * 359.94935 * 24 23 22 26 26 C 1.47338 * 117.24734 * 42.94374 * 5 4 3 27 27 C 1.49960 * 117.68960 * 180.22860 * 2 1 3 28 28 H 1.09008 * 109.46785 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47091 * 119.99157 * 1 2 3 30 30 H 1.08996 * 109.46837 * 240.00028 * 1 2 3 31 31 H 1.08002 * 118.17956 * 0.86692 * 3 2 1 32 32 H 1.09007 * 109.52454 * 109.19157 * 4 3 2 33 33 H 1.09006 * 109.52704 * 229.38116 * 4 3 2 34 34 H 0.96993 * 119.99991 * 359.97438 * 8 6 5 35 35 H 1.08994 * 109.47243 * 54.99548 * 11 9 8 36 36 H 1.09004 * 109.47071 * 174.99869 * 11 9 8 37 37 H 0.97004 * 120.00310 * 179.97438 * 15 14 12 38 38 H 1.07996 * 119.99930 * 0.02562 * 21 20 9 39 39 H 1.08004 * 119.99585 * 180.23186 * 22 21 20 40 40 H 1.08004 * 119.99921 * 179.82838 * 23 22 21 41 41 H 1.08006 * 119.99692 * 179.97438 * 24 23 22 42 42 H 1.08005 * 120.00076 * 180.02562 * 25 24 23 43 43 H 1.09000 * 109.77686 * 57.81520 * 26 5 4 44 44 H 1.09002 * 109.77323 * 178.61958 * 26 5 4 45 45 H 1.08998 * 109.44078 * 40.81493 * 27 2 1 46 46 H 1.09005 * 109.12801 * 281.42781 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1086 1.1463 0.0000 4 6 3.6037 1.3023 -0.0126 5 7 4.2276 -0.0059 0.2339 6 6 5.2795 -0.1359 1.0664 7 8 5.7759 -1.2301 1.2524 8 7 5.7805 0.9468 1.6935 9 6 6.9243 0.8055 2.5979 10 1 7.5941 0.0337 2.2188 11 6 7.6751 2.1359 2.6824 12 6 8.2692 2.4637 1.3367 13 1 8.1252 1.7907 0.5045 14 6 8.9955 3.6234 1.1679 15 7 9.1704 4.4432 2.1812 16 14 9.7313 4.0301 -0.5003 17 1 8.7551 4.8205 -1.2925 18 1 10.9738 4.8217 -0.3136 19 1 10.0499 2.7714 -1.2209 20 6 6.4351 0.4169 3.9693 21 6 5.2910 0.9964 4.4850 22 6 4.8401 0.6370 5.7414 23 6 5.5380 -0.2960 6.4854 24 6 6.6850 -0.8716 5.9718 25 6 7.1337 -0.5151 4.7140 26 6 3.6551 -1.1689 -0.4664 27 6 2.2039 -1.3279 -0.0053 28 1 -0.3633 1.0278 0.0005 29 1 -0.3633 -0.5137 -0.8900 30 1 -0.3633 -0.5138 0.8900 31 1 1.5028 2.0402 0.0144 32 1 3.9223 1.6805 -0.9840 33 1 3.9036 2.0017 0.7679 34 1 5.3842 1.8196 1.5454 35 1 6.9835 2.9254 2.9763 36 1 8.4720 2.0571 3.4219 37 1 9.6818 5.2590 2.0625 38 1 4.7474 1.7274 3.9049 39 1 3.9441 1.0870 6.1427 40 1 5.1873 -0.5747 7.4681 41 1 7.2304 -1.6002 6.5533 42 1 8.0297 -0.9651 4.3126 43 1 3.6838 -1.0020 -1.5431 44 1 4.2219 -2.0657 -0.2162 45 1 1.6836 -2.0079 -0.6798 46 1 2.1892 -1.7430 1.0025 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270498126.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = -8.391894 kcal Electronic energy + Delta-G solvation = -26463.174110 eV Core-core repulsion = 22930.920631 eV Total energy + Delta-G solvation = -3532.253479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.54414 -40.14576 -38.76308 -36.80516 -35.08548 -34.65898 -32.74832 -31.79730 -31.56017 -30.52586 -29.13849 -26.71329 -25.02122 -24.54745 -23.79029 -23.33557 -21.85188 -21.08739 -19.69353 -18.62232 -17.95995 -17.69396 -17.34135 -16.56971 -16.47377 -16.18352 -15.88653 -15.53450 -15.21554 -15.15877 -14.85047 -14.49861 -14.42470 -14.19275 -14.12844 -13.88714 -13.66552 -13.62087 -13.39799 -12.92296 -12.79194 -12.67132 -12.59779 -12.48175 -12.30041 -12.14663 -11.87668 -11.64737 -11.57966 -11.33608 -11.21185 -10.58541 -10.13722 -9.76205 -9.72890 -9.54773 -9.43173 -8.20002 -6.30066 0.51471 0.56203 1.27775 1.38405 1.40666 1.51156 1.70199 2.20706 2.40001 2.90382 3.08370 3.16702 3.75979 3.88360 4.00140 4.02945 4.12282 4.20169 4.22873 4.31658 4.32430 4.44044 4.55942 4.64584 4.66762 4.75060 4.77191 4.79026 4.80972 4.86835 4.95180 5.06701 5.12920 5.17541 5.19934 5.28858 5.41998 5.51836 5.59408 5.61373 5.62614 5.64424 5.77905 5.90652 5.99863 6.11750 6.16503 6.21293 6.81821 7.03692 7.38683 7.62621 8.90716 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008592 B = 0.005340 C = 0.003744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3258.069133 B = 5242.049037 C = 7477.729817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.119 4.119 3 C -0.182 4.182 4 C 0.137 3.863 5 N -0.632 5.632 6 C 0.706 3.294 7 O -0.637 6.637 8 N -0.712 5.712 9 C 0.217 3.783 10 H 0.055 0.945 11 C 0.039 3.961 12 C -0.528 4.528 13 H 0.050 0.950 14 C 0.013 3.987 15 N -0.925 5.925 16 Si 0.956 3.044 17 H -0.268 1.268 18 H -0.283 1.283 19 H -0.275 1.275 20 C -0.097 4.097 21 C -0.120 4.120 22 C -0.125 4.125 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.133 4.133 26 C 0.125 3.875 27 C -0.093 4.093 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.136 0.864 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.401 0.599 35 H 0.012 0.988 36 H 0.006 0.994 37 H 0.264 0.736 38 H 0.115 0.885 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.107 0.893 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.081 -7.450 -0.514 19.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.119 4.119 3 C -0.200 4.200 4 C 0.015 3.985 5 N -0.370 5.370 6 C 0.408 3.592 7 O -0.519 6.519 8 N -0.366 5.366 9 C 0.112 3.888 10 H 0.073 0.927 11 C 0.002 3.998 12 C -0.566 4.566 13 H 0.068 0.932 14 C -0.186 4.186 15 N -0.565 5.565 16 Si 0.781 3.219 17 H -0.193 1.193 18 H -0.208 1.208 19 H -0.200 1.200 20 C -0.099 4.099 21 C -0.138 4.138 22 C -0.143 4.143 23 C -0.147 4.147 24 C -0.141 4.141 25 C -0.151 4.151 26 C 0.003 3.997 27 C -0.131 4.131 28 H 0.088 0.912 29 H 0.096 0.904 30 H 0.085 0.915 31 H 0.154 0.846 32 H 0.103 0.897 33 H 0.102 0.898 34 H 0.239 0.761 35 H 0.030 0.970 36 H 0.024 0.976 37 H 0.073 0.927 38 H 0.133 0.867 39 H 0.163 0.837 40 H 0.170 0.830 41 H 0.162 0.838 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.125 0.875 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.627 -8.051 -0.338 19.382 hybrid contribution 0.850 0.895 -0.869 1.509 sum -16.777 -7.156 -1.207 18.279 Atomic orbital electron populations 1.20979 0.90472 1.03164 1.02698 1.20955 0.97136 0.94354 0.99451 1.22310 0.94479 0.98881 1.04364 1.20599 0.91754 0.83930 1.02224 1.47361 1.32069 1.10326 1.47197 1.15953 0.80264 0.84162 0.78836 1.90814 1.64292 1.26913 1.69855 1.45077 1.34549 1.09174 1.47782 1.19602 0.85692 0.98701 0.84838 0.92694 1.19129 0.94201 0.90200 0.96307 1.21354 1.33121 1.05776 0.96350 0.93168 1.25747 0.96515 0.96164 1.00146 1.70067 1.41487 1.12572 1.32346 0.85588 0.78143 0.78085 0.80045 1.19343 1.20820 1.19954 1.20492 0.96247 0.96652 0.96480 1.21007 0.96201 0.99905 0.96723 1.21419 1.00714 0.98195 0.93946 1.21459 0.95331 0.97035 1.00851 1.21385 0.97379 1.00424 0.94887 1.21175 1.00141 0.97827 0.95993 1.21618 0.93636 0.88231 0.96254 1.20704 0.94027 0.96031 1.02352 0.91235 0.90422 0.91529 0.84613 0.89734 0.89786 0.76148 0.97017 0.97581 0.92685 0.86670 0.83698 0.83022 0.83757 0.86961 0.89847 0.90671 0.87506 0.91868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.51 9.96 71.24 0.71 -0.80 16 2 C -0.12 -2.18 5.86 -15.14 -0.09 -2.27 16 3 C -0.18 -3.54 9.50 27.11 0.26 -3.28 16 4 C 0.14 3.35 6.52 85.42 0.56 3.90 16 5 N -0.63 -19.49 2.97 -841.20 -2.50 -21.98 16 6 C 0.71 28.19 8.30 179.05 1.49 29.68 16 7 O -0.64 -30.12 15.49 -3.99 -0.06 -30.18 16 8 N -0.71 -28.42 3.95 -461.41 -1.82 -30.24 16 9 C 0.22 9.77 2.11 44.24 0.09 9.86 16 10 H 0.05 2.77 7.44 -2.39 -0.02 2.75 16 11 C 0.04 2.01 4.49 29.85 0.13 2.15 16 12 C -0.53 -29.21 8.84 25.60 0.23 -28.99 16 13 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 14 C 0.01 0.73 5.46 84.65 0.46 1.19 16 15 N -0.92 -54.19 13.29 21.45 0.28 -53.91 16 16 Si 0.96 43.79 29.54 68.60 2.03 45.82 16 17 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 18 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 C -0.10 -3.92 4.91 -19.87 -0.10 -4.01 16 21 C -0.12 -4.23 9.32 22.27 0.21 -4.03 16 22 C -0.12 -3.60 10.05 22.27 0.22 -3.38 16 23 C -0.13 -3.44 10.05 22.27 0.22 -3.22 16 24 C -0.12 -3.67 10.05 22.27 0.22 -3.45 16 25 C -0.13 -4.96 9.67 22.27 0.22 -4.74 16 26 C 0.13 3.21 6.50 86.25 0.56 3.77 16 27 C -0.09 -1.85 5.96 29.65 0.18 -1.68 16 28 H 0.07 0.79 7.54 -2.38 -0.02 0.77 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.14 2.08 7.56 -2.91 -0.02 2.06 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.08 2.09 5.94 -2.38 -0.01 2.07 16 34 H 0.40 14.74 6.23 -92.71 -0.58 14.16 16 35 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 36 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 37 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 38 H 0.12 3.89 7.73 -2.91 -0.02 3.87 16 39 H 0.15 3.21 8.06 -2.91 -0.02 3.18 16 40 H 0.15 2.88 8.06 -2.91 -0.02 2.85 16 41 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 42 H 0.11 4.19 8.04 -2.91 -0.02 4.16 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.07 2.24 7.07 -2.39 -0.02 2.22 16 45 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -71.19 377.01 3.89 -67.30 By element: Atomic # 1 Polarization: 32.08 SS G_CDS: 0.39 Total: 32.47 kcal Atomic # 6 Polarization: -14.86 SS G_CDS: 5.57 Total: -9.28 kcal Atomic # 7 Polarization: -102.09 SS G_CDS: -4.03 Total: -106.13 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.06 Total: -30.18 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Total: -71.19 3.89 -67.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270498126.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.910 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds