Wall clock time and date at job start Tue Mar 31 2020 11:04:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29821 * 118.35724 * 2 1 4 4 C 1.50306 * 122.88864 * 180.35093 * 3 2 1 5 5 C 1.53087 * 109.72048 * 343.50554 * 4 3 2 6 6 N 1.47243 * 108.47224 * 48.96422 * 5 4 3 7 7 C 1.46896 * 110.99931 * 167.80938 * 6 5 4 8 8 C 1.50703 * 109.46739 * 188.97690 * 7 6 5 9 9 O 1.21279 * 120.00072 * 6.08641 * 8 7 6 10 10 N 1.34783 * 119.99489 * 186.09047 * 8 7 6 11 11 C 1.46503 * 119.99403 * 184.96390 * 10 8 7 12 12 C 1.50701 * 109.46795 * 90.00040 * 11 10 8 13 13 H 1.07999 * 120.00224 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99422 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00547 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99654 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47344 * 59.99764 * 16 14 12 18 18 H 1.48498 * 109.47201 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46906 * 299.99528 * 16 14 12 20 20 C 1.39923 * 120.00142 * 4.96289 * 10 8 7 21 21 C 1.38874 * 120.07021 * 290.51508 * 20 10 8 22 22 C 1.38112 * 119.92490 * 179.76761 * 21 20 10 23 23 C 1.38275 * 120.07178 * 0.48861 * 22 21 20 24 24 C 1.38284 * 120.14318 * 359.76421 * 23 22 21 25 25 C 1.38107 * 120.06884 * 0.02562 * 24 23 22 26 26 C 1.46844 * 110.20153 * 291.19785 * 6 5 4 27 27 H 1.08999 * 109.47193 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47179 * 119.99768 * 1 2 3 29 29 H 1.09003 * 109.47313 * 239.99750 * 1 2 3 30 30 H 1.07998 * 118.55589 * 0.06980 * 3 2 1 31 31 H 1.08997 * 109.43409 * 103.58111 * 4 3 2 32 32 H 1.09007 * 109.42878 * 223.42974 * 4 3 2 33 33 H 1.09006 * 109.63468 * 289.27060 * 5 4 3 34 34 H 1.08997 * 109.63895 * 168.65807 * 5 4 3 35 35 H 1.09000 * 109.47402 * 308.97632 * 7 6 5 36 36 H 1.09002 * 109.47136 * 68.97839 * 7 6 5 37 37 H 1.09001 * 109.46729 * 209.99950 * 11 10 8 38 38 H 1.09004 * 109.47539 * 329.99878 * 11 10 8 39 39 H 0.97000 * 120.00390 * 180.02562 * 15 14 12 40 40 H 1.07992 * 120.03413 * 359.97438 * 21 20 10 41 41 H 1.08004 * 119.96115 * 180.25460 * 22 21 20 42 42 H 1.08005 * 119.93269 * 179.74711 * 23 22 21 43 43 H 1.07999 * 119.96541 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.03233 * 179.97438 * 25 24 23 45 45 H 1.09006 * 109.33725 * 290.67637 * 26 6 5 46 46 H 1.08999 * 109.20425 * 171.09071 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1424 0.0000 4 6 3.6219 1.2612 -0.0077 5 6 4.2482 -0.0766 0.3942 6 7 3.6208 -1.1437 -0.4031 7 6 4.3681 -2.4023 -0.2789 8 6 3.8336 -3.4037 -1.2702 9 8 2.9974 -3.0669 -2.0815 10 7 4.2850 -4.6736 -1.2551 11 6 3.8479 -5.6186 -2.2858 12 6 4.7972 -5.5615 -3.4548 13 1 5.6415 -4.8883 -3.4324 14 6 4.5879 -6.3687 -4.5528 15 7 3.5601 -7.1887 -4.5799 16 14 5.7651 -6.2985 -6.0016 17 1 7.1319 -6.6589 -5.5467 18 1 5.3219 -7.2562 -7.0463 19 1 5.7767 -4.9240 -6.5637 20 6 5.1711 -5.0893 -0.2552 21 6 6.4737 -4.6082 -0.2358 22 6 7.3444 -5.0168 0.7554 23 6 6.9234 -5.9118 1.7218 24 6 5.6285 -6.3967 1.7021 25 6 4.7517 -5.9887 0.7162 26 6 2.2201 -1.3213 0.0004 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5139 0.8900 30 1 1.5340 2.0473 0.0012 31 1 3.9590 1.5334 -1.0079 32 1 3.9282 2.0320 0.6996 33 1 4.0722 -0.2597 1.4542 34 1 5.3199 -0.0536 0.1964 35 1 5.4236 -2.2196 -0.4802 36 1 4.2535 -2.7947 0.7316 37 1 3.8394 -6.6275 -1.8735 38 1 2.8444 -5.3539 -2.6194 39 1 3.4131 -7.7569 -5.3522 40 1 6.8044 -3.9128 -0.9929 41 1 8.3564 -4.6399 0.7734 42 1 7.6074 -6.2330 2.4934 43 1 5.3029 -7.0959 2.4581 44 1 3.7406 -6.3682 0.7012 45 1 2.1845 -1.7503 1.0018 46 1 1.7283 -1.9971 -0.6993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280704650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:58 Heat of formation + Delta-G solvation = 20.172208 kcal Electronic energy + Delta-G solvation = -26473.061459 eV Core-core repulsion = 22942.046612 eV Total energy + Delta-G solvation = -3531.014847 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.11019 -38.98256 -37.82208 -34.88318 -34.20035 -32.67842 -31.77759 -30.72884 -29.41025 -28.38064 -26.92658 -26.32643 -23.89582 -22.82397 -22.48711 -22.09648 -21.55129 -18.99239 -17.58728 -17.03538 -16.52510 -16.23637 -15.91624 -15.26119 -15.16772 -14.84670 -14.72152 -14.29698 -13.93946 -13.87214 -13.74390 -13.31974 -13.16503 -12.95360 -12.71636 -12.47979 -12.32197 -12.28209 -11.95418 -11.83643 -11.46198 -11.44038 -11.20793 -11.03601 -10.87080 -10.85481 -10.61716 -10.46912 -10.17074 -9.72993 -9.25383 -8.71664 -8.70582 -8.60594 -8.43313 -8.09288 -7.68620 -6.05471 -4.10012 1.54761 1.62135 2.29373 3.29321 3.32933 3.36648 3.40672 3.55980 3.99635 4.14093 4.44914 4.71089 4.82031 5.05853 5.13698 5.14986 5.17289 5.29157 5.29991 5.33808 5.36411 5.44561 5.50617 5.52507 5.60620 5.66549 5.70683 5.74953 5.80007 5.92639 5.98312 6.02822 6.06568 6.15643 6.24038 6.48540 6.58344 6.70534 6.80024 6.92159 7.00791 7.13389 7.17926 7.20659 7.37442 7.49316 7.90172 8.19011 8.36354 8.86217 9.01798 9.54562 11.02849 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.004657 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.003524 B = 6011.385727 C = 7572.667911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.118 4.118 3 C -0.162 4.162 4 C -0.081 4.081 5 C 0.051 3.949 6 N -0.513 5.513 7 C 0.038 3.962 8 C 0.515 3.485 9 O -0.509 6.509 10 N -0.565 5.565 11 C 0.250 3.750 12 C -0.526 4.526 13 H 0.057 0.943 14 C 0.063 3.937 15 N -0.894 5.894 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.275 1.275 20 C 0.164 3.836 21 C -0.125 4.125 22 C -0.110 4.110 23 C -0.135 4.135 24 C -0.110 4.110 25 C -0.125 4.125 26 C 0.084 3.916 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.035 0.965 34 H 0.077 0.923 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.034 0.966 38 H 0.048 0.952 39 H 0.264 0.736 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.037 0.963 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.331 10.419 15.897 19.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.118 4.118 3 C -0.180 4.180 4 C -0.118 4.118 5 C -0.077 4.077 6 N -0.237 5.237 7 C -0.093 4.093 8 C 0.302 3.698 9 O -0.383 6.383 10 N -0.295 5.295 11 C 0.132 3.868 12 C -0.565 4.565 13 H 0.075 0.925 14 C -0.139 4.139 15 N -0.533 5.533 16 Si 0.726 3.274 17 H -0.202 1.202 18 H -0.211 1.211 19 H -0.201 1.201 20 C 0.072 3.928 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.153 4.153 24 C -0.129 4.129 25 C -0.145 4.145 26 C -0.043 4.043 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.080 0.920 30 H 0.121 0.879 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.120 0.880 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.074 0.926 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.136 0.864 43 H 0.139 0.861 44 H 0.141 0.859 45 H 0.055 0.945 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 1.737 10.601 14.776 18.268 hybrid contribution 0.749 -0.456 -0.114 0.884 sum 2.486 10.145 14.662 18.002 Atomic orbital electron populations 1.20879 0.92174 1.02065 1.02311 1.20985 0.95738 0.94644 1.00443 1.21973 0.95968 0.96847 1.03243 1.20462 0.92980 0.96266 1.02119 1.22224 0.98850 0.91728 0.94885 1.62058 1.01772 1.05133 1.54714 1.22111 0.99412 0.89998 0.97806 1.20186 0.82499 0.82029 0.85070 1.90663 1.31502 1.77333 1.38766 1.45992 1.44427 1.11663 1.27395 1.19404 0.96912 0.86420 0.84065 1.21332 1.11146 1.22664 1.01375 0.92457 1.24899 0.95582 0.95104 0.98297 1.69913 1.28334 1.24429 1.30647 0.86554 0.80975 0.78010 0.81898 1.20217 1.21127 1.20096 1.17755 0.89734 0.96245 0.89080 1.21407 0.92441 1.01835 0.98743 1.20978 0.99166 0.97964 0.94794 1.21057 0.96169 0.98592 0.99497 1.20964 0.93716 0.99785 0.98409 1.21325 1.00338 0.98714 0.94135 1.21050 0.88399 0.95662 0.99161 0.92170 0.91214 0.91951 0.87911 0.90209 0.91072 0.94695 0.90452 0.88006 0.92642 0.94838 0.93351 0.92617 0.85849 0.86143 0.86414 0.86138 0.85860 0.94465 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.12 -1.58 5.91 -101.00 -0.60 -2.18 16 3 C -0.16 -1.97 9.53 -35.89 -0.34 -2.31 16 4 C -0.08 -0.91 6.32 -28.03 -0.18 -1.08 16 5 C 0.05 0.62 5.59 -3.59 -0.02 0.60 16 6 N -0.51 -8.10 4.42 -237.55 -1.05 -9.15 16 7 C 0.04 0.61 3.99 -4.98 -0.02 0.59 16 8 C 0.52 10.85 7.23 -10.98 -0.08 10.77 16 9 O -0.51 -12.70 14.15 5.56 0.08 -12.62 16 10 N -0.57 -12.19 2.50 -114.73 -0.29 -12.47 16 11 C 0.25 6.56 5.15 -5.19 -0.03 6.54 16 12 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 13 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 14 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 15 N -0.89 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.90 22.07 29.54 -169.99 -5.02 17.05 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 C 0.16 2.96 4.33 -83.69 -0.36 2.59 16 21 C -0.12 -1.98 8.55 -39.39 -0.34 -2.31 16 22 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 23 C -0.13 -1.63 10.04 -39.55 -0.40 -2.03 16 24 C -0.11 -1.43 10.04 -39.61 -0.40 -1.83 16 25 C -0.13 -2.00 9.74 -39.39 -0.38 -2.38 16 26 C 0.08 1.31 4.95 -5.28 -0.03 1.28 16 27 H 0.06 0.57 7.61 -51.93 -0.40 0.18 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.07 7.63 -52.49 -0.40 0.67 16 31 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 33 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 34 H 0.08 0.84 7.92 -51.93 -0.41 0.43 16 35 H 0.10 1.51 6.92 -51.93 -0.36 1.15 16 36 H 0.06 0.82 7.75 -51.93 -0.40 0.41 16 37 H 0.03 0.90 7.90 -51.93 -0.41 0.49 16 38 H 0.05 1.41 7.36 -51.93 -0.38 1.03 16 39 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 40 H 0.12 1.96 7.74 -52.49 -0.41 1.56 16 41 H 0.12 1.24 8.06 -52.48 -0.42 0.82 16 42 H 0.12 1.10 8.06 -52.48 -0.42 0.67 16 43 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 44 H 0.12 1.94 8.06 -52.48 -0.42 1.51 16 45 H 0.04 0.54 8.06 -51.93 -0.42 0.12 16 46 H 0.10 1.93 6.19 -51.93 -0.32 1.61 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -32.80 375.56 -10.76 -43.56 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.25 Total: 2.02 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -3.62 Total: -8.13 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.60 Total: -47.54 kcal Atomic # 8 Polarization: -12.70 SS G_CDS: 0.08 Total: -12.62 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.80 -10.76 -43.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280704650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.728 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds