Wall clock time and date at job start Tue Mar 31 2020 11:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.29821 * 118.35724 * 2 1 4 4 C 1.50306 * 122.88864 * 180.35093 * 3 2 1 5 5 C 1.53087 * 109.72048 * 343.50554 * 4 3 2 6 6 N 1.47243 * 108.47224 * 48.96422 * 5 4 3 7 7 C 1.46896 * 110.99931 * 167.80938 * 6 5 4 8 8 C 1.50703 * 109.46739 * 188.97690 * 7 6 5 9 9 O 1.21279 * 120.00072 * 6.08641 * 8 7 6 10 10 N 1.34783 * 119.99489 * 186.09047 * 8 7 6 11 11 C 1.46503 * 119.99403 * 184.96390 * 10 8 7 12 12 C 1.50701 * 109.46795 * 90.00040 * 11 10 8 13 13 H 1.07999 * 120.00224 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99422 * 179.97438 * 12 11 10 15 15 N 1.31508 * 120.00547 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99654 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47344 * 59.99764 * 16 14 12 18 18 H 1.48498 * 109.47201 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.46906 * 299.99528 * 16 14 12 20 20 C 1.39923 * 120.00142 * 4.96289 * 10 8 7 21 21 C 1.38874 * 120.07021 * 290.51508 * 20 10 8 22 22 C 1.38112 * 119.92490 * 179.76761 * 21 20 10 23 23 C 1.38275 * 120.07178 * 0.48861 * 22 21 20 24 24 C 1.38284 * 120.14318 * 359.76421 * 23 22 21 25 25 C 1.38107 * 120.06884 * 0.02562 * 24 23 22 26 26 C 1.46844 * 110.20153 * 291.19785 * 6 5 4 27 27 H 1.08999 * 109.47193 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.47179 * 119.99768 * 1 2 3 29 29 H 1.09003 * 109.47313 * 239.99750 * 1 2 3 30 30 H 1.07998 * 118.55589 * 0.06980 * 3 2 1 31 31 H 1.08997 * 109.43409 * 103.58111 * 4 3 2 32 32 H 1.09007 * 109.42878 * 223.42974 * 4 3 2 33 33 H 1.09006 * 109.63468 * 289.27060 * 5 4 3 34 34 H 1.08997 * 109.63895 * 168.65807 * 5 4 3 35 35 H 1.09000 * 109.47402 * 308.97632 * 7 6 5 36 36 H 1.09002 * 109.47136 * 68.97839 * 7 6 5 37 37 H 1.09001 * 109.46729 * 209.99950 * 11 10 8 38 38 H 1.09004 * 109.47539 * 329.99878 * 11 10 8 39 39 H 0.97000 * 120.00390 * 180.02562 * 15 14 12 40 40 H 1.07992 * 120.03413 * 359.97438 * 21 20 10 41 41 H 1.08004 * 119.96115 * 180.25460 * 22 21 20 42 42 H 1.08005 * 119.93269 * 179.74711 * 23 22 21 43 43 H 1.07999 * 119.96541 * 179.97438 * 24 23 22 44 44 H 1.08004 * 120.03233 * 179.97438 * 25 24 23 45 45 H 1.09006 * 109.33725 * 290.67637 * 26 6 5 46 46 H 1.08999 * 109.20425 * 171.09071 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1236 1.1424 0.0000 4 6 3.6219 1.2612 -0.0077 5 6 4.2482 -0.0766 0.3942 6 7 3.6208 -1.1437 -0.4031 7 6 4.3681 -2.4023 -0.2789 8 6 3.8336 -3.4037 -1.2702 9 8 2.9974 -3.0669 -2.0815 10 7 4.2850 -4.6736 -1.2551 11 6 3.8479 -5.6186 -2.2858 12 6 4.7972 -5.5615 -3.4548 13 1 5.6415 -4.8883 -3.4324 14 6 4.5879 -6.3687 -4.5528 15 7 3.5601 -7.1887 -4.5799 16 14 5.7651 -6.2985 -6.0016 17 1 7.1319 -6.6589 -5.5467 18 1 5.3219 -7.2562 -7.0463 19 1 5.7767 -4.9240 -6.5637 20 6 5.1711 -5.0893 -0.2552 21 6 6.4737 -4.6082 -0.2358 22 6 7.3444 -5.0168 0.7554 23 6 6.9234 -5.9118 1.7218 24 6 5.6285 -6.3967 1.7021 25 6 4.7517 -5.9887 0.7162 26 6 2.2201 -1.3213 0.0004 27 1 -0.3633 1.0276 0.0005 28 1 -0.3633 -0.5138 -0.8900 29 1 -0.3634 -0.5139 0.8900 30 1 1.5340 2.0473 0.0012 31 1 3.9590 1.5334 -1.0079 32 1 3.9282 2.0320 0.6996 33 1 4.0722 -0.2597 1.4542 34 1 5.3199 -0.0536 0.1964 35 1 5.4236 -2.2196 -0.4802 36 1 4.2535 -2.7947 0.7316 37 1 3.8394 -6.6275 -1.8735 38 1 2.8444 -5.3539 -2.6194 39 1 3.4131 -7.7569 -5.3522 40 1 6.8044 -3.9128 -0.9929 41 1 8.3564 -4.6399 0.7734 42 1 7.6074 -6.2330 2.4934 43 1 5.3029 -7.0959 2.4581 44 1 3.7406 -6.3682 0.7012 45 1 2.1845 -1.7503 1.0018 46 1 1.7283 -1.9971 -0.6993 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280704650.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:57 Heat of formation + Delta-G solvation = 0.815455 kcal Electronic energy + Delta-G solvation = -26473.900830 eV Core-core repulsion = 22942.046612 eV Total energy + Delta-G solvation = -3531.854219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.56347 -40.10779 -39.18404 -36.51957 -35.37571 -34.76454 -32.77830 -31.85650 -30.93607 -29.84657 -28.35116 -27.59659 -25.36391 -24.38342 -23.68328 -23.31279 -22.73698 -20.45090 -18.79626 -18.57022 -18.39565 -17.65962 -17.10397 -16.76791 -16.58129 -16.19389 -16.00655 -15.75913 -15.28491 -15.07868 -14.84742 -14.49157 -14.33481 -14.28386 -14.26073 -13.82212 -13.58145 -13.44717 -13.38748 -13.10355 -13.02274 -12.77927 -12.67302 -12.54582 -12.41082 -12.15316 -12.10348 -11.99316 -11.74622 -11.43236 -10.85213 -10.68032 -10.07004 -9.82842 -9.68738 -9.32958 -9.24075 -8.25952 -6.41079 0.37088 0.50578 1.30951 1.33680 1.38558 1.45526 1.68488 2.06762 2.36832 2.84076 2.92267 3.03884 3.55009 3.75168 3.95947 4.05510 4.11698 4.13136 4.25069 4.29254 4.33444 4.37814 4.38615 4.53993 4.60620 4.63236 4.66636 4.74870 4.77010 4.79186 4.94722 4.98663 5.03120 5.09941 5.14533 5.16155 5.18997 5.42350 5.48240 5.54608 5.62817 5.66876 5.76985 5.92425 5.99375 6.05008 6.08518 6.13532 6.64867 6.73968 7.22828 7.38616 8.81350 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010213 B = 0.004657 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2741.003524 B = 6011.385727 C = 7572.667911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.146 4.146 3 C -0.152 4.152 4 C -0.083 4.083 5 C 0.049 3.951 6 N -0.536 5.536 7 C 0.059 3.941 8 C 0.506 3.494 9 O -0.563 6.563 10 N -0.567 5.567 11 C 0.268 3.732 12 C -0.543 4.543 13 H 0.053 0.947 14 C 0.010 3.990 15 N -0.928 5.928 16 Si 0.968 3.032 17 H -0.260 1.260 18 H -0.276 1.276 19 H -0.276 1.276 20 C 0.124 3.876 21 C -0.134 4.134 22 C -0.101 4.101 23 C -0.119 4.119 24 C -0.104 4.104 25 C -0.143 4.143 26 C 0.089 3.911 27 H 0.080 0.920 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.074 0.926 32 H 0.104 0.896 33 H 0.047 0.953 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.072 0.928 37 H 0.018 0.982 38 H 0.003 0.997 39 H 0.268 0.732 40 H 0.116 0.884 41 H 0.156 0.844 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.109 0.891 45 H 0.042 0.958 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.523 11.654 18.137 22.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.147 4.147 3 C -0.170 4.170 4 C -0.120 4.120 5 C -0.077 4.077 6 N -0.261 5.261 7 C -0.072 4.072 8 C 0.295 3.705 9 O -0.441 6.441 10 N -0.295 5.295 11 C 0.148 3.852 12 C -0.581 4.581 13 H 0.071 0.929 14 C -0.189 4.189 15 N -0.567 5.567 16 Si 0.792 3.208 17 H -0.185 1.185 18 H -0.201 1.201 19 H -0.201 1.201 20 C 0.033 3.967 21 C -0.154 4.154 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.123 4.123 25 C -0.163 4.163 26 C -0.038 4.038 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.092 0.908 32 H 0.123 0.877 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.137 0.863 36 H 0.090 0.910 37 H 0.036 0.964 38 H 0.021 0.979 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.173 0.827 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.128 0.872 45 H 0.060 0.940 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.962 11.838 17.071 21.358 hybrid contribution -0.218 -0.871 -0.709 1.144 sum 4.744 10.967 16.362 20.261 Atomic orbital electron populations 1.20865 0.91078 1.03241 1.01864 1.21078 0.96742 0.94069 1.02793 1.22316 0.96912 0.97026 1.00750 1.20574 0.92188 0.96508 1.02732 1.22378 0.99576 0.90776 0.95009 1.62021 1.02027 1.05601 1.56464 1.21923 0.99703 0.88995 0.96598 1.21174 0.81531 0.82478 0.85306 1.90626 1.33823 1.78360 1.41256 1.45805 1.45103 1.11227 1.27373 1.18780 0.94513 0.86648 0.85234 1.21584 1.11299 1.22737 1.02474 0.92878 1.25850 0.97332 0.94521 1.01220 1.70041 1.29962 1.25069 1.31642 0.85462 0.79213 0.77984 0.78159 1.18487 1.20081 1.20141 1.18033 0.90375 0.98893 0.89394 1.21433 0.91871 1.02211 0.99887 1.21366 0.99975 0.97198 0.93432 1.21564 0.96002 0.96689 0.99451 1.21323 0.93728 0.99541 0.97662 1.21387 1.00712 0.98956 0.95203 1.20868 0.88527 0.96404 0.98011 0.90064 0.92971 0.91192 0.85682 0.90779 0.87735 0.93490 0.88857 0.86318 0.91021 0.96442 0.97929 0.92302 0.86573 0.82683 0.82233 0.83123 0.87243 0.94038 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.58 10.01 71.24 0.71 -1.86 16 2 C -0.15 -3.95 5.91 -15.45 -0.09 -4.04 16 3 C -0.15 -3.43 9.53 26.74 0.25 -3.17 16 4 C -0.08 -1.65 6.32 29.75 0.19 -1.46 16 5 C 0.05 1.11 5.59 86.27 0.48 1.59 16 6 N -0.54 -17.16 4.42 -905.48 -4.00 -21.17 16 7 C 0.06 1.93 3.99 85.56 0.34 2.27 16 8 C 0.51 22.87 7.23 87.66 0.63 23.50 16 9 O -0.56 -30.75 14.15 -3.03 -0.04 -30.79 16 10 N -0.57 -26.18 2.50 -635.28 -1.59 -27.77 16 11 C 0.27 15.28 5.15 85.63 0.44 15.72 16 12 C -0.54 -32.46 9.39 25.60 0.24 -32.22 16 13 H 0.05 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.59 5.46 84.66 0.46 1.05 16 15 N -0.93 -57.52 13.29 21.45 0.28 -57.23 16 16 Si 0.97 46.03 29.54 68.60 2.03 48.05 16 17 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 20 C 0.12 4.57 4.33 38.15 0.17 4.74 16 21 C -0.13 -4.14 8.55 22.39 0.19 -3.94 16 22 C -0.10 -2.25 10.04 22.25 0.22 -2.03 16 23 C -0.12 -2.34 10.04 22.29 0.22 -2.12 16 24 C -0.10 -2.43 10.04 22.25 0.22 -2.21 16 25 C -0.14 -4.61 9.74 22.39 0.22 -4.39 16 26 C 0.09 2.91 4.95 85.39 0.42 3.33 16 27 H 0.08 1.46 7.61 -2.39 -0.02 1.44 16 28 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.13 2.25 7.63 -2.91 -0.02 2.22 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 33 H 0.05 0.95 8.08 -2.38 -0.02 0.93 16 34 H 0.09 1.78 7.92 -2.39 -0.02 1.76 16 35 H 0.12 3.46 6.92 -2.39 -0.02 3.44 16 36 H 0.07 2.11 7.75 -2.39 -0.02 2.09 16 37 H 0.02 1.03 7.90 -2.39 -0.02 1.01 16 38 H 0.00 0.17 7.36 -2.38 -0.02 0.15 16 39 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.12 3.66 7.74 -2.91 -0.02 3.64 16 41 H 0.16 2.39 8.06 -2.91 -0.02 2.37 16 42 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 43 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 44 H 0.11 3.70 8.06 -2.91 -0.02 3.67 16 45 H 0.04 1.25 8.06 -2.38 -0.02 1.23 16 46 H 0.06 2.51 6.19 -2.39 -0.01 2.50 16 Total: -1.00 -77.76 375.56 2.96 -74.80 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.95 Total: 19.35 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.33 Total: -5.24 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -5.31 Total: -106.17 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.04 Total: -30.79 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.05 kcal Total: -77.76 2.96 -74.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280704650.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.618 kcal (2) G-P(sol) polarization free energy of solvation -77.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds