Wall clock time and date at job start Tue Mar 31 2020 10:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47436 * 45.48641 * 3 2 1 5 5 C 1.36939 * 119.99911 * 264.07421 * 4 3 2 6 6 H 1.07999 * 119.99675 * 211.41871 * 5 4 3 7 7 C 1.38812 * 120.00189 * 31.41008 * 5 4 3 8 8 N 1.31616 * 119.99860 * 6.47059 * 7 5 4 9 9 Si 1.86804 * 120.00088 * 186.46201 * 7 5 4 10 10 H 1.48500 * 109.46930 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47015 * 120.00291 * 9 7 5 12 12 H 1.48500 * 109.47015 * 240.00666 * 9 7 5 13 13 C 1.46498 * 120.00190 * 84.06672 * 4 3 2 14 14 C 1.53007 * 109.47444 * 270.00281 * 13 4 3 15 15 C 1.52992 * 109.47396 * 180.02562 * 14 13 4 16 16 C 1.50699 * 109.47406 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99730 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00443 * 179.97438 * 16 15 14 19 19 C 1.39920 * 119.99955 * 184.16924 * 18 16 15 20 20 C 1.38871 * 120.07155 * 53.73728 * 19 18 16 21 21 C 1.50699 * 120.03480 * 359.97438 * 20 19 18 22 22 C 1.38116 * 119.93085 * 180.20777 * 20 19 18 23 23 C 1.38275 * 120.06869 * 359.51101 * 22 20 19 24 24 C 1.38288 * 120.14410 * 0.27702 * 23 22 20 25 25 C 1.38111 * 120.06537 * 359.95423 * 24 23 22 26 26 C 1.50700 * 120.03235 * 180.02562 * 25 24 23 27 27 H 4.40645 * 5.51333 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.46818 * 285.48065 * 3 2 1 29 29 H 1.09001 * 109.46988 * 165.48288 * 3 2 1 30 30 H 0.96998 * 119.99999 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47545 * 150.00352 * 13 4 3 32 32 H 1.08999 * 109.47373 * 30.00204 * 13 4 3 33 33 H 1.09001 * 109.46692 * 59.99548 * 14 13 4 34 34 H 1.09007 * 109.46699 * 299.99975 * 14 13 4 35 35 H 1.09002 * 109.47220 * 59.99801 * 15 14 13 36 36 H 1.09007 * 109.47037 * 299.99597 * 15 14 13 37 37 H 0.96999 * 119.99773 * 4.17143 * 18 16 15 38 38 H 1.09000 * 109.47411 * 263.13722 * 21 20 19 39 39 H 1.09001 * 109.47384 * 23.13669 * 21 20 19 40 40 H 1.09001 * 109.47459 * 143.13888 * 21 20 19 41 41 H 1.08001 * 119.96403 * 179.78879 * 22 20 19 42 42 H 1.07994 * 119.93003 * 180.25894 * 23 22 20 43 43 H 1.07993 * 119.96619 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47321 * 90.00354 * 26 25 24 45 45 H 1.08998 * 109.47255 * 210.00450 * 26 25 24 46 46 H 1.08995 * 109.47302 * 330.00104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -0.9674 -0.9849 5 6 3.4791 -2.2324 -0.5891 6 1 4.2637 -2.7650 -1.1058 7 6 2.8198 -2.8298 0.4764 8 7 1.7811 -2.2355 1.0243 9 14 3.4065 -4.4775 1.1324 10 1 4.5842 -4.9310 0.3496 11 1 3.7873 -4.3345 2.5606 12 1 2.3149 -5.4767 1.0087 13 6 3.2553 -0.5824 -2.3932 14 6 1.9446 -0.8905 -3.1201 15 6 2.0706 -0.4890 -4.5910 16 6 0.7795 -0.7919 -5.3068 17 8 -0.1498 -1.2813 -4.7002 18 7 0.6575 -0.5190 -6.6210 19 6 -0.5680 -0.7186 -7.2661 20 6 -1.7227 -0.1337 -6.7629 21 6 -1.6576 0.7167 -5.5205 22 6 -2.9315 -0.3361 -7.3995 23 6 -2.9912 -1.1120 -8.5425 24 6 -1.8425 -1.6922 -9.0487 25 6 -0.6315 -1.4975 -8.4141 26 6 0.6199 -2.1298 -8.9667 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.2735 0.9904 29 1 3.0089 0.9957 -0.2576 30 1 1.3202 -2.6531 1.7686 31 1 4.0675 -1.1435 -2.8552 32 1 3.4662 0.4848 -2.4614 33 1 1.1324 -0.3294 -2.6581 34 1 1.7337 -1.9578 -3.0520 35 1 2.8828 -1.0505 -5.0527 36 1 2.2818 0.5782 -4.6595 37 1 1.4192 -0.1843 -7.1197 38 1 -1.9311 0.1152 -4.6536 39 1 -0.6441 1.0974 -5.3933 40 1 -2.3504 1.5528 -5.6157 41 1 -3.8304 0.1157 -7.0067 42 1 -3.9369 -1.2653 -9.0409 43 1 -1.8925 -2.2980 -9.9414 44 1 1.0892 -1.4475 -9.6755 45 1 1.3121 -2.3388 -8.1510 46 1 0.3637 -3.0603 -9.4732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281260145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:00 Heat of formation + Delta-G solvation = 59.403054 kcal Electronic energy + Delta-G solvation = -25833.419885 eV Core-core repulsion = 22304.106215 eV Total energy + Delta-G solvation = -3529.313670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72657 -38.61937 -36.27456 -34.73725 -33.63666 -33.10009 -31.40077 -31.00521 -30.29101 -27.57460 -26.73297 -26.35757 -25.69645 -23.10718 -21.67521 -21.09531 -20.31015 -19.89797 -17.63564 -17.31291 -16.86633 -16.33683 -16.08495 -15.36634 -14.99194 -14.86840 -14.21320 -14.03178 -13.76745 -13.71187 -13.36704 -13.22350 -13.05474 -12.96328 -12.83580 -12.68456 -11.96200 -11.79604 -11.67986 -11.45202 -11.34396 -11.23969 -11.10278 -10.96841 -10.85412 -10.72294 -10.14760 -10.12267 -9.97157 -9.80384 -9.57883 -8.85424 -8.64189 -8.56740 -8.30206 -8.28366 -6.74715 -5.69315 -3.28432 1.19193 1.28257 2.80087 3.15492 3.39173 3.46479 3.48228 3.64032 4.34033 4.52298 4.64339 4.64924 4.70769 4.88015 4.93293 5.12308 5.27155 5.32498 5.37026 5.40387 5.44200 5.48228 5.50643 5.67288 5.69439 5.77376 5.79169 5.96387 5.99623 6.13000 6.17371 6.27117 6.30606 6.34634 6.46328 6.48815 6.52172 6.55709 6.81962 6.99178 7.00890 7.26571 7.31904 7.43738 7.59055 7.82182 8.35305 8.45547 9.20122 9.39292 9.82220 10.34464 11.31029 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.003070 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.289767 B = 9119.779127 C = 9530.361993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.087 4.087 3 C 0.272 3.728 4 N -0.586 5.586 5 C -0.269 4.269 6 H 0.069 0.931 7 C 0.011 3.989 8 N -0.885 5.885 9 Si 0.902 3.098 10 H -0.278 1.278 11 H -0.290 1.290 12 H -0.290 1.290 13 C 0.150 3.850 14 C -0.123 4.123 15 C -0.136 4.136 16 C 0.509 3.491 17 O -0.506 6.506 18 N -0.686 5.686 19 C 0.143 3.857 20 C -0.070 4.070 21 C -0.110 4.110 22 C -0.116 4.116 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.098 4.098 26 C -0.113 4.113 27 H 0.185 0.815 28 H 0.086 0.914 29 H 0.033 0.967 30 H 0.254 0.746 31 H 0.045 0.955 32 H 0.036 0.964 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.406 0.594 38 H 0.086 0.914 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.123 0.877 42 H 0.121 0.879 43 H 0.122 0.878 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 6.732 -20.197 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.090 4.090 3 C 0.147 3.853 4 N -0.305 5.305 5 C -0.398 4.398 6 H 0.087 0.913 7 C -0.189 4.189 8 N -0.527 5.527 9 Si 0.732 3.268 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.217 1.217 13 C 0.024 3.976 14 C -0.163 4.163 15 C -0.176 4.176 16 C 0.297 3.703 17 O -0.379 6.379 18 N -0.335 5.335 19 C 0.050 3.950 20 C -0.072 4.072 21 C -0.167 4.167 22 C -0.134 4.134 23 C -0.141 4.141 24 C -0.136 4.136 25 C -0.100 4.100 26 C -0.170 4.170 27 H 0.203 0.797 28 H 0.104 0.896 29 H 0.051 0.949 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.242 0.758 38 H 0.104 0.896 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.141 0.859 42 H 0.139 0.861 43 H 0.140 0.860 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.878 6.309 -19.511 20.869 hybrid contribution -0.045 -1.041 0.061 1.044 sum -3.923 5.268 -19.450 20.529 Atomic orbital electron populations 1.24038 0.95213 1.07796 1.05276 1.24078 0.95118 0.93885 0.95936 1.17651 0.83102 0.89627 0.94902 1.43963 1.75136 1.10771 1.00658 1.19159 1.13838 0.91799 1.15043 0.91298 1.25300 0.95550 0.97660 1.00390 1.69950 1.19602 1.38110 1.25037 0.86238 0.77948 0.84156 0.78486 1.20277 1.21629 1.21691 1.20924 0.94235 0.96772 0.85699 1.22092 1.01486 1.03060 0.89677 1.21780 0.93981 1.02907 0.98969 1.21265 0.90983 0.77270 0.80776 1.90759 1.41041 1.40516 1.65559 1.43671 1.11599 1.67785 1.10485 1.17313 0.86233 0.97751 0.93706 1.19926 0.92595 0.97381 0.97326 1.20853 1.02091 0.98155 0.95554 1.20888 0.96850 0.99775 0.95901 1.21072 0.98223 0.98250 0.96596 1.20823 0.91764 1.00913 1.00145 1.19869 0.96149 0.97540 0.96468 1.20725 0.94938 1.00301 1.01019 0.79747 0.89601 0.94915 0.93509 0.93650 0.94558 0.91554 0.91344 0.89281 0.89388 0.75833 0.89567 0.92225 0.92142 0.85899 0.86080 0.85988 0.91251 0.91416 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.37 19.19 29.55 0.57 -6.80 16 2 C -0.09 -2.18 10.04 -37.12 -0.37 -2.55 16 3 C 0.27 6.52 5.45 -6.83 -0.04 6.49 16 4 N -0.59 -14.33 2.48 -176.57 -0.44 -14.77 16 5 C -0.27 -7.25 9.58 -15.06 -0.14 -7.39 16 6 H 0.07 1.82 7.84 -52.49 -0.41 1.41 16 7 C 0.01 0.31 5.14 -17.43 -0.09 0.22 16 8 N -0.89 -25.62 9.18 55.49 0.51 -25.11 16 9 Si 0.90 21.88 29.56 -169.99 -5.02 16.85 16 10 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 13 C 0.15 2.98 5.70 -4.04 -0.02 2.95 16 14 C -0.12 -2.39 4.68 -26.73 -0.13 -2.52 16 15 C -0.14 -1.87 5.70 -27.89 -0.16 -2.03 16 16 C 0.51 7.72 6.02 -10.99 -0.07 7.65 16 17 O -0.51 -10.09 13.26 5.55 0.07 -10.02 16 18 N -0.69 -8.08 3.86 -9.86 -0.04 -8.12 16 19 C 0.14 1.86 5.80 -83.70 -0.49 1.37 16 20 C -0.07 -0.95 5.49 -104.43 -0.57 -1.52 16 21 C -0.11 -1.50 8.27 36.01 0.30 -1.21 16 22 C -0.12 -1.35 9.72 -39.61 -0.39 -1.74 16 23 C -0.12 -1.27 10.04 -39.55 -0.40 -1.67 16 24 C -0.12 -1.21 9.70 -39.61 -0.38 -1.60 16 25 C -0.10 -1.10 5.90 -104.43 -0.62 -1.72 16 26 C -0.11 -0.97 9.69 36.01 0.35 -0.63 16 27 H 0.19 3.92 7.80 -54.10 -0.42 3.50 16 28 H 0.09 2.22 7.02 -51.93 -0.36 1.86 16 29 H 0.03 0.68 7.98 -51.93 -0.41 0.27 16 30 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.05 0.85 8.04 -51.93 -0.42 0.43 16 32 H 0.04 0.63 7.95 -51.93 -0.41 0.22 16 33 H 0.07 1.48 7.15 -51.93 -0.37 1.10 16 34 H 0.07 1.60 8.10 -51.93 -0.42 1.18 16 35 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.41 3.36 8.72 -40.82 -0.36 3.00 16 38 H 0.09 1.40 7.13 -51.93 -0.37 1.03 16 39 H 0.06 0.82 6.29 -51.93 -0.33 0.49 16 40 H 0.06 0.69 8.13 -51.93 -0.42 0.26 16 41 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 42 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.62 7.46 -51.93 -0.39 0.24 16 46 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 LS Contribution 380.35 15.07 5.73 5.73 Total: -1.00 -33.59 380.35 -9.02 -42.60 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: -7.19 Total: 5.52 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -2.64 Total: -12.68 kcal Atomic # 7 Polarization: -48.04 SS G_CDS: 0.03 Total: -48.00 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.07 Total: -10.02 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.59 -9.02 -42.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281260145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.005 kcal (2) G-P(sol) polarization free energy of solvation -33.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds