Wall clock time and date at job start Tue Mar 31 2020 10:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47436 * 45.48641 * 3 2 1 5 5 C 1.36939 * 119.99911 * 264.07421 * 4 3 2 6 6 H 1.07999 * 119.99675 * 211.41871 * 5 4 3 7 7 C 1.38812 * 120.00189 * 31.41008 * 5 4 3 8 8 N 1.31616 * 119.99860 * 6.47059 * 7 5 4 9 9 Si 1.86804 * 120.00088 * 186.46201 * 7 5 4 10 10 H 1.48500 * 109.46930 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47015 * 120.00291 * 9 7 5 12 12 H 1.48500 * 109.47015 * 240.00666 * 9 7 5 13 13 C 1.46498 * 120.00190 * 84.06672 * 4 3 2 14 14 C 1.53007 * 109.47444 * 270.00281 * 13 4 3 15 15 C 1.52992 * 109.47396 * 180.02562 * 14 13 4 16 16 C 1.50699 * 109.47406 * 180.02562 * 15 14 13 17 17 O 1.21287 * 119.99730 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00443 * 179.97438 * 16 15 14 19 19 C 1.39920 * 119.99955 * 184.16924 * 18 16 15 20 20 C 1.38871 * 120.07155 * 53.73728 * 19 18 16 21 21 C 1.50699 * 120.03480 * 359.97438 * 20 19 18 22 22 C 1.38116 * 119.93085 * 180.20777 * 20 19 18 23 23 C 1.38275 * 120.06869 * 359.51101 * 22 20 19 24 24 C 1.38288 * 120.14410 * 0.27702 * 23 22 20 25 25 C 1.38111 * 120.06537 * 359.95423 * 24 23 22 26 26 C 1.50700 * 120.03235 * 180.02562 * 25 24 23 27 27 H 4.40645 * 5.51333 * 180.02562 * 4 1 2 28 28 H 1.09000 * 109.46818 * 285.48065 * 3 2 1 29 29 H 1.09001 * 109.46988 * 165.48288 * 3 2 1 30 30 H 0.96998 * 119.99999 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.47545 * 150.00352 * 13 4 3 32 32 H 1.08999 * 109.47373 * 30.00204 * 13 4 3 33 33 H 1.09001 * 109.46692 * 59.99548 * 14 13 4 34 34 H 1.09007 * 109.46699 * 299.99975 * 14 13 4 35 35 H 1.09002 * 109.47220 * 59.99801 * 15 14 13 36 36 H 1.09007 * 109.47037 * 299.99597 * 15 14 13 37 37 H 0.96999 * 119.99773 * 4.17143 * 18 16 15 38 38 H 1.09000 * 109.47411 * 263.13722 * 21 20 19 39 39 H 1.09001 * 109.47384 * 23.13669 * 21 20 19 40 40 H 1.09001 * 109.47459 * 143.13888 * 21 20 19 41 41 H 1.08001 * 119.96403 * 179.78879 * 22 20 19 42 42 H 1.07994 * 119.93003 * 180.25894 * 23 22 20 43 43 H 1.07993 * 119.96619 * 179.97438 * 24 23 22 44 44 H 1.09002 * 109.47321 * 90.00354 * 26 25 24 45 45 H 1.08998 * 109.47255 * 210.00450 * 26 25 24 46 46 H 1.08995 * 109.47302 * 330.00104 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -0.9674 -0.9849 5 6 3.4791 -2.2324 -0.5891 6 1 4.2637 -2.7650 -1.1058 7 6 2.8198 -2.8298 0.4764 8 7 1.7811 -2.2355 1.0243 9 14 3.4065 -4.4775 1.1324 10 1 4.5842 -4.9310 0.3496 11 1 3.7873 -4.3345 2.5606 12 1 2.3149 -5.4767 1.0087 13 6 3.2553 -0.5824 -2.3932 14 6 1.9446 -0.8905 -3.1201 15 6 2.0706 -0.4890 -4.5910 16 6 0.7795 -0.7919 -5.3068 17 8 -0.1498 -1.2813 -4.7002 18 7 0.6575 -0.5190 -6.6210 19 6 -0.5680 -0.7186 -7.2661 20 6 -1.7227 -0.1337 -6.7629 21 6 -1.6576 0.7167 -5.5205 22 6 -2.9315 -0.3361 -7.3995 23 6 -2.9912 -1.1120 -8.5425 24 6 -1.8425 -1.6922 -9.0487 25 6 -0.6315 -1.4975 -8.4141 26 6 0.6199 -2.1298 -8.9667 27 1 -1.0498 -0.0001 -0.0003 28 1 3.0094 -0.2735 0.9904 29 1 3.0089 0.9957 -0.2576 30 1 1.3202 -2.6531 1.7686 31 1 4.0675 -1.1435 -2.8552 32 1 3.4662 0.4848 -2.4614 33 1 1.1324 -0.3294 -2.6581 34 1 1.7337 -1.9578 -3.0520 35 1 2.8828 -1.0505 -5.0527 36 1 2.2818 0.5782 -4.6595 37 1 1.4192 -0.1843 -7.1197 38 1 -1.9311 0.1152 -4.6536 39 1 -0.6441 1.0974 -5.3933 40 1 -2.3504 1.5528 -5.6157 41 1 -3.8304 0.1157 -7.0067 42 1 -3.9369 -1.2653 -9.0409 43 1 -1.8925 -2.2980 -9.9414 44 1 1.0892 -1.4475 -9.6755 45 1 1.3121 -2.3388 -8.1510 46 1 0.3637 -3.0603 -9.4732 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281260145.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:53:59 Heat of formation + Delta-G solvation = 41.016309 kcal Electronic energy + Delta-G solvation = -25834.217194 eV Core-core repulsion = 22304.106215 eV Total energy + Delta-G solvation = -3530.110979 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74653 -39.67266 -38.07578 -35.78807 -34.76184 -34.44045 -33.38123 -32.48222 -31.57047 -28.75407 -27.90836 -27.56654 -27.40424 -24.66680 -22.92660 -22.01575 -21.77790 -21.03761 -19.27250 -18.65623 -18.21492 -17.96670 -17.19231 -16.79284 -16.24656 -16.15849 -15.60804 -15.42836 -15.05338 -14.92345 -14.78980 -14.57329 -14.39645 -14.02540 -13.87442 -13.59808 -13.45431 -13.22500 -12.92950 -12.83446 -12.79339 -12.58984 -12.44654 -12.36673 -12.17520 -12.12185 -12.10350 -11.96906 -11.46622 -11.07315 -10.85047 -10.76151 -10.53079 -10.24624 -9.50367 -9.22250 -8.71677 -7.78089 -5.37436 0.31234 0.40953 1.44898 1.47293 1.56267 1.66110 2.15455 2.41106 2.55070 2.66968 2.78276 3.35249 3.78543 3.83374 3.85406 3.91639 4.08895 4.15718 4.22203 4.34307 4.35405 4.44233 4.53811 4.57613 4.68333 4.74437 4.80024 4.80698 4.87486 4.88671 4.91790 4.96764 5.07058 5.15218 5.29790 5.30320 5.39752 5.44579 5.48774 5.60287 5.61321 5.65395 5.68458 5.77691 6.11947 6.41340 6.49188 7.16574 7.28250 7.45590 7.86309 8.32979 9.20172 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017669 B = 0.003070 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.289767 B = 9119.779127 C = 9530.361993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.107 4.107 3 C 0.272 3.728 4 N -0.602 5.602 5 C -0.270 4.270 6 H 0.074 0.926 7 C -0.044 4.044 8 N -0.913 5.913 9 Si 0.961 3.039 10 H -0.263 1.263 11 H -0.290 1.290 12 H -0.303 1.303 13 C 0.148 3.852 14 C -0.106 4.106 15 C -0.124 4.124 16 C 0.508 3.492 17 O -0.564 6.564 18 N -0.665 5.665 19 C 0.116 3.884 20 C -0.098 4.098 21 C -0.102 4.102 22 C -0.129 4.129 23 C -0.122 4.122 24 C -0.121 4.121 25 C -0.104 4.104 26 C -0.111 4.111 27 H 0.205 0.795 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.244 0.756 31 H 0.061 0.939 32 H 0.069 0.931 33 H 0.031 0.969 34 H 0.018 0.982 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.424 0.576 38 H 0.050 0.950 39 H 0.053 0.947 40 H 0.077 0.923 41 H 0.134 0.866 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 7.083 -23.256 24.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.334 4.334 2 C -0.110 4.110 3 C 0.147 3.853 4 N -0.322 5.322 5 C -0.400 4.400 6 H 0.091 0.909 7 C -0.241 4.241 8 N -0.557 5.557 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.217 1.217 12 H -0.231 1.231 13 C 0.022 3.978 14 C -0.147 4.147 15 C -0.164 4.164 16 C 0.298 3.702 17 O -0.441 6.441 18 N -0.314 5.314 19 C 0.023 3.977 20 C -0.100 4.100 21 C -0.158 4.158 22 C -0.148 4.148 23 C -0.140 4.140 24 C -0.139 4.139 25 C -0.106 4.106 26 C -0.168 4.168 27 H 0.222 0.778 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.054 0.946 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.050 0.950 34 H 0.037 0.963 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.263 0.737 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.096 0.904 41 H 0.152 0.848 42 H 0.166 0.834 43 H 0.168 0.832 44 H 0.110 0.890 45 H 0.078 0.922 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -2.653 6.690 -22.643 23.759 hybrid contribution -0.444 -1.120 0.890 1.498 sum -3.097 5.569 -21.753 22.667 Atomic orbital electron populations 1.24690 0.96189 1.07595 1.04915 1.24570 0.95975 0.94141 0.96300 1.17688 0.82531 0.91188 0.93915 1.44205 1.74992 1.10167 1.02809 1.19481 1.13351 0.92689 1.14479 0.90883 1.25976 0.96090 1.00695 1.01310 1.70139 1.20936 1.39200 1.25388 0.85295 0.77399 0.80378 0.77888 1.18703 1.21660 1.23062 1.21138 0.94466 0.98968 0.83205 1.21747 1.00066 0.99253 0.93598 1.21673 0.94242 1.05532 0.94934 1.21473 0.90644 0.76471 0.81638 1.90753 1.42911 1.43458 1.67001 1.43374 1.12136 1.66536 1.09398 1.17576 0.86320 0.99015 0.94753 1.20100 0.93841 0.98479 0.97556 1.20711 1.02086 0.98287 0.94739 1.21143 0.96722 1.00355 0.96561 1.21448 0.99632 0.97062 0.95889 1.21238 0.91278 1.00600 1.00808 1.20226 0.97748 0.96863 0.95779 1.20778 0.93660 1.01147 1.01184 0.77764 0.92160 0.91302 0.94631 0.92063 0.91230 0.95030 0.96253 0.86030 0.85751 0.73654 0.93098 0.92778 0.90410 0.84781 0.83354 0.83187 0.88969 0.92209 0.90276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.31 -15.66 19.19 74.32 1.43 -14.23 16 2 C -0.11 -5.47 10.04 31.13 0.31 -5.16 16 3 C 0.27 13.09 5.45 84.58 0.46 13.55 16 4 N -0.60 -29.31 2.48 -712.55 -1.77 -31.08 16 5 C -0.27 -14.57 9.58 84.03 0.80 -13.76 16 6 H 0.07 3.81 7.84 -2.91 -0.02 3.79 16 7 C -0.04 -2.47 5.14 84.86 0.44 -2.04 16 8 N -0.91 -54.40 9.18 21.65 0.20 -54.20 16 9 Si 0.96 45.77 29.56 68.60 2.03 47.80 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 11 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 12 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 13 C 0.15 5.59 5.70 86.38 0.49 6.09 16 14 C -0.11 -4.15 4.68 30.59 0.14 -4.00 16 15 C -0.12 -3.17 5.70 29.84 0.17 -3.00 16 16 C 0.51 15.27 6.02 87.66 0.53 15.80 16 17 O -0.56 -23.53 13.26 -3.05 -0.04 -23.57 16 18 N -0.67 -14.82 3.86 -303.51 -1.17 -15.99 16 19 C 0.12 2.92 5.80 38.15 0.22 3.14 16 20 C -0.10 -2.65 5.49 -19.74 -0.11 -2.75 16 21 C -0.10 -2.89 8.27 71.24 0.59 -2.30 16 22 C -0.13 -2.94 9.72 22.25 0.22 -2.72 16 23 C -0.12 -2.27 10.04 22.29 0.22 -2.04 16 24 C -0.12 -2.17 9.70 22.25 0.22 -1.95 16 25 C -0.10 -2.13 5.90 -19.74 -0.12 -2.25 16 26 C -0.11 -1.60 9.69 71.24 0.69 -0.91 16 27 H 0.21 8.90 7.80 -4.43 -0.03 8.86 16 28 H 0.06 3.19 7.02 -2.39 -0.02 3.17 16 29 H 0.07 2.76 7.98 -2.39 -0.02 2.74 16 30 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.06 2.13 8.04 -2.39 -0.02 2.11 16 32 H 0.07 2.19 7.95 -2.39 -0.02 2.17 16 33 H 0.03 1.43 7.15 -2.39 -0.02 1.42 16 34 H 0.02 0.91 8.10 -2.38 -0.02 0.89 16 35 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.12 2.34 8.14 -2.38 -0.02 2.32 16 37 H 0.42 5.95 8.72 -92.71 -0.81 5.14 16 38 H 0.05 1.79 7.13 -2.39 -0.02 1.78 16 39 H 0.05 1.52 6.29 -2.39 -0.02 1.51 16 40 H 0.08 1.81 8.13 -2.39 -0.02 1.79 16 41 H 0.13 2.57 8.06 -2.91 -0.02 2.55 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 43 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 44 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.06 0.96 7.46 -2.39 -0.02 0.94 16 46 H 0.08 0.98 8.09 -2.39 -0.02 0.96 16 Total: -1.00 -77.19 380.35 6.11 -71.08 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.16 Total: 24.50 kcal Atomic # 6 Polarization: -25.25 SS G_CDS: 6.71 Total: -18.54 kcal Atomic # 7 Polarization: -98.53 SS G_CDS: -2.74 Total: -101.27 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: -0.04 Total: -23.57 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -77.19 6.11 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281260145.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.099 kcal (2) G-P(sol) polarization free energy of solvation -77.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds