Wall clock time and date at job start Tue Mar 31 2020 11:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 113.40986 * 2 1 4 4 C 1.53498 * 114.20502 * 133.19343 * 2 1 3 5 5 N 1.47071 * 87.98150 * 87.52248 * 4 2 1 6 6 C 1.34779 * 136.05738 * 207.08183 * 5 4 2 7 7 O 1.21582 * 120.00032 * 185.31953 * 6 5 4 8 8 N 1.34779 * 119.99941 * 5.32102 * 6 5 4 9 9 C 1.39239 * 120.00048 * 175.34892 * 8 6 5 10 10 C 1.39476 * 119.83501 * 215.91846 * 9 8 6 11 11 C 1.36373 * 120.17320 * 179.97438 * 10 9 8 12 12 C 1.40872 * 119.82247 * 359.97438 * 11 10 9 13 13 C 1.41161 * 120.16305 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99765 * 332.81754 * 13 12 11 15 15 C 1.39894 * 120.00350 * 152.54596 * 13 12 11 16 16 N 1.30882 * 119.99854 * 348.07782 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 168.07707 * 15 13 12 18 18 H 1.48492 * 109.47029 * 89.99814 * 17 15 13 19 19 H 1.48500 * 109.47138 * 209.99935 * 17 15 13 20 20 H 1.48502 * 109.47058 * 330.00063 * 17 15 13 21 21 C 1.40872 * 119.67498 * 0.25316 * 12 11 10 22 22 C 1.36366 * 119.82648 * 359.50750 * 21 12 11 23 23 C 1.47071 * 87.88599 * 27.34027 * 5 4 2 24 24 H 1.08997 * 113.46843 * 87.43505 * 23 5 4 25 25 C 1.52996 * 113.46843 * 217.87819 * 23 5 4 26 26 C 1.52996 * 117.49778 * 250.76579 * 25 23 5 27 27 C 1.52997 * 117.49930 * 182.14144 * 25 23 5 28 28 H 1.09009 * 109.47202 * 306.30506 * 1 2 3 29 29 H 1.08996 * 109.47180 * 66.30557 * 1 2 3 30 30 H 1.09000 * 109.46948 * 186.30549 * 1 2 3 31 31 H 1.09003 * 109.46785 * 173.69378 * 3 2 1 32 32 H 1.08997 * 109.47203 * 293.69360 * 3 2 1 33 33 H 1.08997 * 109.47345 * 53.69690 * 3 2 1 34 34 H 1.09001 * 113.47108 * 332.74518 * 4 2 1 35 35 H 1.09001 * 113.51979 * 202.30768 * 4 2 1 36 36 H 0.97000 * 119.99886 * 355.35179 * 8 6 5 37 37 H 1.07997 * 119.91731 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.09051 * 179.97438 * 11 10 9 39 39 H 0.96994 * 119.99930 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.08210 * 179.74548 * 21 12 11 41 41 H 1.08004 * 119.91965 * 180.25475 * 22 21 12 42 42 H 1.08999 * 115.54724 * 36.47368 * 25 23 5 43 43 H 1.09000 * 117.50255 * 0.02562 * 26 25 23 44 44 H 1.09004 * 117.49990 * 145.02240 * 26 25 23 45 45 H 1.08998 * 117.50279 * 214.97904 * 27 25 23 46 46 H 1.09003 * 117.49811 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4040 0.0000 4 6 2.1593 -0.9583 1.0207 5 7 2.0802 -2.0143 0.0002 6 6 1.9800 -3.3584 0.0002 7 8 2.0316 -3.9719 -1.0482 8 7 1.8224 -4.0223 1.1625 9 6 1.6219 -5.4002 1.1555 10 6 0.7698 -5.9821 2.0939 11 6 0.5680 -7.3309 2.0931 12 6 1.2224 -8.1365 1.1406 13 6 1.0191 -9.5334 1.1335 14 1 0.7539 -10.0452 2.0469 15 6 1.1557 -10.2541 -0.0577 16 7 1.2393 -9.6206 -1.1999 17 14 1.2186 -12.1207 -0.0181 18 1 -0.1578 -12.6650 -0.1371 19 1 2.0449 -12.6122 -1.1499 20 1 1.8189 -12.5686 1.2642 21 6 2.0853 -7.5421 0.1991 22 6 2.2733 -6.1915 0.2093 23 6 2.1650 -0.9588 -1.0205 24 1 3.1882 -0.6937 -1.2867 25 6 1.2838 -1.2214 -2.2433 26 6 1.9845 -1.5823 -3.5546 27 6 1.3396 -0.2051 -3.3856 28 1 -0.3634 0.6085 0.8282 29 1 -0.3633 0.4130 -0.9410 30 1 -0.3633 -1.0215 0.1129 31 1 3.2196 1.3316 0.1129 32 1 1.9033 1.9015 -0.9410 33 1 1.7239 1.9792 0.8282 34 1 1.5267 -1.1449 1.8884 35 1 3.1811 -0.6938 1.2932 36 1 1.8487 -3.5403 2.0038 37 1 0.2685 -5.3631 2.8232 38 1 -0.0917 -7.7801 2.8205 39 1 1.3336 -10.1203 -2.0258 40 1 2.5936 -8.1540 -0.5315 41 1 2.9313 -5.7336 -0.5145 42 1 0.3241 -1.6956 -2.0380 43 1 3.0733 -1.6331 -3.5461 44 1 1.4858 -2.2942 -4.2124 45 1 0.4168 -0.0110 -3.9322 46 1 2.0046 0.6503 -3.2662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000289658909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:59 Heat of formation + Delta-G solvation = 56.447484 kcal Electronic energy + Delta-G solvation = -26067.489894 eV Core-core repulsion = 22538.048061 eV Total energy + Delta-G solvation = -3529.441833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.03196 -38.91040 -37.00999 -36.40909 -34.28728 -32.93642 -32.25395 -29.43256 -28.96773 -27.75009 -26.74820 -26.47666 -24.44674 -22.30534 -21.37857 -21.16291 -20.71184 -19.54431 -18.53503 -17.67470 -17.22827 -16.40204 -15.80517 -15.56001 -15.06811 -14.84561 -14.33012 -14.18253 -13.94281 -13.71283 -13.62886 -13.02303 -12.69455 -12.59950 -12.42350 -12.17903 -11.98764 -11.81332 -11.71488 -11.58017 -11.49006 -11.40026 -11.19261 -11.06854 -10.88952 -10.72379 -10.44836 -10.29864 -9.89867 -9.82907 -9.73117 -9.41481 -9.07705 -8.62311 -8.47860 -7.44227 -6.87766 -6.62287 -4.23292 2.64499 2.84567 3.11561 3.13375 3.16575 3.21908 3.73149 3.80334 3.99858 4.09048 4.34602 4.60002 4.74208 4.75101 4.84217 4.90707 5.00149 5.06712 5.24384 5.31936 5.38752 5.43912 5.53029 5.58643 5.69983 5.74851 5.76636 5.79439 5.88788 5.97119 5.98683 6.12931 6.17521 6.21246 6.33078 6.47562 6.91693 7.05709 7.13069 7.22332 7.38158 7.56382 7.71306 7.95135 8.11668 8.14523 8.34943 8.58804 8.72155 8.96959 9.01649 9.24938 10.30438 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002984 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.654821 B = 9379.661533 C =10186.221690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.094 4.094 3 C -0.133 4.133 4 C 0.102 3.898 5 N -0.662 5.662 6 C 0.724 3.276 7 O -0.563 6.563 8 N -0.666 5.666 9 C 0.017 3.983 10 C -0.109 4.109 11 C -0.213 4.213 12 C 0.104 3.896 13 C -0.461 4.461 14 H 0.076 0.924 15 C 0.072 3.928 16 N -0.797 5.797 17 Si 0.909 3.091 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.151 4.151 22 C -0.088 4.088 23 C 0.194 3.806 24 H 0.084 0.916 25 C -0.146 4.146 26 C -0.164 4.164 27 C -0.177 4.177 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.388 0.612 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.279 0.721 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.413 20.683 1.175 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.095 4.095 3 C -0.191 4.191 4 C -0.022 4.022 5 N -0.403 5.403 6 C 0.428 3.572 7 O -0.439 6.439 8 N -0.311 5.311 9 C -0.075 4.075 10 C -0.130 4.130 11 C -0.233 4.233 12 C 0.101 3.899 13 C -0.491 4.491 14 H 0.094 0.906 15 C -0.145 4.145 16 N -0.423 5.423 17 Si 0.734 3.266 18 H -0.196 1.196 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.171 4.171 22 C -0.108 4.108 23 C 0.090 3.910 24 H 0.102 0.898 25 C -0.165 4.165 26 C -0.201 4.201 27 C -0.214 4.214 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.221 0.779 37 H 0.106 0.894 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.442 19.891 0.131 19.943 hybrid contribution -0.002 -0.685 0.374 0.781 sum 1.440 19.205 0.505 19.266 Atomic orbital electron populations 1.21454 0.91933 1.02434 1.01952 1.22310 0.96817 0.94077 0.96281 1.21640 1.00415 0.94611 1.02405 1.23051 1.00344 0.85415 0.93387 1.48768 1.79036 1.02497 1.10008 1.15368 0.78373 0.78687 0.84727 1.90942 1.57234 1.64762 1.30928 1.42030 1.75661 1.07196 1.06246 1.17026 1.06605 0.79635 1.04245 1.20026 0.98287 0.95288 0.99388 1.20557 1.05507 0.92422 1.04791 1.17672 0.88730 0.93214 0.90300 1.19507 1.41921 0.92488 0.95200 0.90592 1.25912 0.92578 1.00986 0.95021 1.69844 1.35846 1.37889 0.98676 0.86299 0.78967 0.82395 0.78928 1.19605 1.20190 1.18590 1.21064 1.00839 0.92971 1.02186 1.20585 0.99011 0.93726 0.97506 1.22110 0.97366 0.83132 0.88389 0.89835 1.22266 1.01285 1.03677 0.89243 1.22845 0.99936 0.97437 0.99871 1.22901 1.03010 0.93357 1.02157 0.92322 0.91760 0.92062 0.92272 0.91896 0.91945 0.90800 0.90292 0.77915 0.89409 0.88703 0.90965 0.86049 0.87539 0.87522 0.89048 0.88803 0.88892 0.88987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 8.07 37.16 0.30 -0.78 16 2 C -0.09 -0.82 1.44 -153.86 -0.22 -1.04 16 3 C -0.13 -0.82 9.25 37.16 0.34 -0.47 16 4 C 0.10 1.00 7.43 -8.49 -0.06 0.94 16 5 N -0.66 -9.55 3.33 -182.91 -0.61 -10.16 16 6 C 0.72 14.20 8.50 -86.91 -0.74 13.46 16 7 O -0.56 -13.54 14.11 5.29 0.07 -13.46 16 8 N -0.67 -12.76 5.31 -14.10 -0.07 -12.84 16 9 C 0.02 0.41 6.30 -83.57 -0.53 -0.12 16 10 C -0.11 -2.49 9.90 -39.79 -0.39 -2.89 16 11 C -0.21 -5.31 9.74 -39.26 -0.38 -5.69 16 12 C 0.10 2.85 5.56 -106.80 -0.59 2.26 16 13 C -0.46 -12.56 9.05 -37.85 -0.34 -12.90 16 14 H 0.08 1.97 7.87 -52.48 -0.41 1.55 16 15 C 0.07 1.87 5.23 -17.34 -0.09 1.78 16 16 N -0.80 -21.69 10.82 55.55 0.60 -21.09 16 17 Si 0.91 19.29 29.58 -169.99 -5.03 14.26 16 18 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 19 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 20 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 21 C -0.15 -4.18 8.61 -39.26 -0.34 -4.51 16 22 C -0.09 -2.30 8.61 -39.79 -0.34 -2.64 16 23 C 0.19 2.29 3.63 -72.25 -0.26 2.02 16 24 H 0.08 0.93 8.09 -51.93 -0.42 0.51 16 25 C -0.15 -1.85 3.93 -90.63 -0.36 -2.20 16 26 C -0.16 -2.09 10.24 -26.73 -0.27 -2.36 16 27 C -0.18 -1.72 10.25 -26.73 -0.27 -2.00 16 28 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 29 H 0.06 0.54 7.77 -51.93 -0.40 0.14 16 30 H 0.06 0.70 7.87 -51.93 -0.41 0.29 16 31 H 0.06 0.34 8.04 -51.93 -0.42 -0.08 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 35 H 0.08 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.39 6.02 8.54 -40.82 -0.35 5.67 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.28 6.96 8.30 -40.82 -0.34 6.62 16 40 H 0.12 3.50 6.17 -52.48 -0.32 3.17 16 41 H 0.11 2.83 6.25 -52.48 -0.33 2.51 16 42 H 0.11 1.59 7.74 -51.93 -0.40 1.19 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 44 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -31.98 376.12 -11.17 -43.15 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -7.24 Total: 11.62 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: -4.56 Total: -17.14 kcal Atomic # 7 Polarization: -44.01 SS G_CDS: -0.08 Total: -44.09 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.07 Total: -13.46 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.98 -11.17 -43.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289658909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.597 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds