Wall clock time and date at job start Tue Mar 31 2020 11:29:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 113.40986 * 2 1 4 4 C 1.53498 * 114.20502 * 133.19343 * 2 1 3 5 5 N 1.47071 * 87.98150 * 87.52248 * 4 2 1 6 6 C 1.34779 * 136.05738 * 207.08183 * 5 4 2 7 7 O 1.21582 * 120.00032 * 185.31953 * 6 5 4 8 8 N 1.34779 * 119.99941 * 5.32102 * 6 5 4 9 9 C 1.39239 * 120.00048 * 175.34892 * 8 6 5 10 10 C 1.39476 * 119.83501 * 215.91846 * 9 8 6 11 11 C 1.36373 * 120.17320 * 179.97438 * 10 9 8 12 12 C 1.40872 * 119.82247 * 359.97438 * 11 10 9 13 13 C 1.41161 * 120.16305 * 179.97438 * 12 11 10 14 14 H 1.08006 * 119.99765 * 332.81754 * 13 12 11 15 15 C 1.39894 * 120.00350 * 152.54596 * 13 12 11 16 16 N 1.30882 * 119.99854 * 348.07782 * 15 13 12 17 17 Si 1.86800 * 120.00240 * 168.07707 * 15 13 12 18 18 H 1.48492 * 109.47029 * 89.99814 * 17 15 13 19 19 H 1.48500 * 109.47138 * 209.99935 * 17 15 13 20 20 H 1.48502 * 109.47058 * 330.00063 * 17 15 13 21 21 C 1.40872 * 119.67498 * 0.25316 * 12 11 10 22 22 C 1.36366 * 119.82648 * 359.50750 * 21 12 11 23 23 C 1.47071 * 87.88599 * 27.34027 * 5 4 2 24 24 H 1.08997 * 113.46843 * 87.43505 * 23 5 4 25 25 C 1.52996 * 113.46843 * 217.87819 * 23 5 4 26 26 C 1.52996 * 117.49778 * 250.76579 * 25 23 5 27 27 C 1.52997 * 117.49930 * 182.14144 * 25 23 5 28 28 H 1.09009 * 109.47202 * 306.30506 * 1 2 3 29 29 H 1.08996 * 109.47180 * 66.30557 * 1 2 3 30 30 H 1.09000 * 109.46948 * 186.30549 * 1 2 3 31 31 H 1.09003 * 109.46785 * 173.69378 * 3 2 1 32 32 H 1.08997 * 109.47203 * 293.69360 * 3 2 1 33 33 H 1.08997 * 109.47345 * 53.69690 * 3 2 1 34 34 H 1.09001 * 113.47108 * 332.74518 * 4 2 1 35 35 H 1.09001 * 113.51979 * 202.30768 * 4 2 1 36 36 H 0.97000 * 119.99886 * 355.35179 * 8 6 5 37 37 H 1.07997 * 119.91731 * 359.97438 * 10 9 8 38 38 H 1.07996 * 120.09051 * 179.97438 * 11 10 9 39 39 H 0.96994 * 119.99930 * 180.02562 * 16 15 13 40 40 H 1.08005 * 120.08210 * 179.74548 * 21 12 11 41 41 H 1.08004 * 119.91965 * 180.25475 * 22 21 12 42 42 H 1.08999 * 115.54724 * 36.47368 * 25 23 5 43 43 H 1.09000 * 117.50255 * 0.02562 * 26 25 23 44 44 H 1.09004 * 117.49990 * 145.02240 * 26 25 23 45 45 H 1.08998 * 117.50279 * 214.97904 * 27 25 23 46 46 H 1.09003 * 117.49811 * 0.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4040 0.0000 4 6 2.1593 -0.9583 1.0207 5 7 2.0802 -2.0143 0.0002 6 6 1.9800 -3.3584 0.0002 7 8 2.0316 -3.9719 -1.0482 8 7 1.8224 -4.0223 1.1625 9 6 1.6219 -5.4002 1.1555 10 6 0.7698 -5.9821 2.0939 11 6 0.5680 -7.3309 2.0931 12 6 1.2224 -8.1365 1.1406 13 6 1.0191 -9.5334 1.1335 14 1 0.7539 -10.0452 2.0469 15 6 1.1557 -10.2541 -0.0577 16 7 1.2393 -9.6206 -1.1999 17 14 1.2186 -12.1207 -0.0181 18 1 -0.1578 -12.6650 -0.1371 19 1 2.0449 -12.6122 -1.1499 20 1 1.8189 -12.5686 1.2642 21 6 2.0853 -7.5421 0.1991 22 6 2.2733 -6.1915 0.2093 23 6 2.1650 -0.9588 -1.0205 24 1 3.1882 -0.6937 -1.2867 25 6 1.2838 -1.2214 -2.2433 26 6 1.9845 -1.5823 -3.5546 27 6 1.3396 -0.2051 -3.3856 28 1 -0.3634 0.6085 0.8282 29 1 -0.3633 0.4130 -0.9410 30 1 -0.3633 -1.0215 0.1129 31 1 3.2196 1.3316 0.1129 32 1 1.9033 1.9015 -0.9410 33 1 1.7239 1.9792 0.8282 34 1 1.5267 -1.1449 1.8884 35 1 3.1811 -0.6938 1.2932 36 1 1.8487 -3.5403 2.0038 37 1 0.2685 -5.3631 2.8232 38 1 -0.0917 -7.7801 2.8205 39 1 1.3336 -10.1203 -2.0258 40 1 2.5936 -8.1540 -0.5315 41 1 2.9313 -5.7336 -0.5145 42 1 0.3241 -1.6956 -2.0380 43 1 3.0733 -1.6331 -3.5461 44 1 1.4858 -2.2942 -4.2124 45 1 0.4168 -0.0110 -3.9322 46 1 2.0046 0.6503 -3.2662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000289658909.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:57 Heat of formation + Delta-G solvation = 38.717449 kcal Electronic energy + Delta-G solvation = -26068.258726 eV Core-core repulsion = 22538.048061 eV Total energy + Delta-G solvation = -3530.210665 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.10304 -40.48021 -38.80589 -37.37750 -36.12171 -34.70995 -33.31073 -31.42117 -30.81161 -28.39289 -28.00657 -27.38056 -26.20351 -23.27962 -23.18533 -22.80219 -21.91171 -21.01742 -19.46392 -19.25120 -18.98526 -18.01231 -17.17181 -16.85582 -16.56575 -15.84564 -15.78692 -15.60295 -15.37847 -14.87712 -14.59051 -14.51416 -14.46165 -13.97505 -13.67225 -13.57503 -13.35639 -12.95769 -12.91874 -12.78916 -12.68611 -12.62760 -12.38168 -12.34968 -12.25879 -11.98194 -11.75833 -11.69411 -11.60887 -11.30811 -11.21796 -10.86890 -10.60944 -10.46187 -9.68471 -9.45229 -8.79015 -8.56839 -6.28100 0.85977 1.13548 1.37223 1.43833 1.52689 1.56312 2.19708 2.23298 2.77148 2.82720 3.14801 3.25975 3.69306 3.73453 3.86729 4.01720 4.07765 4.15187 4.23849 4.34012 4.42120 4.48536 4.53822 4.57967 4.75281 4.82434 4.90993 4.92637 4.98108 4.99641 5.08803 5.11042 5.13383 5.17137 5.19406 5.22685 5.28152 5.32112 5.39764 5.45203 5.55697 5.68904 5.87231 6.09367 6.12748 6.34544 6.42378 6.69505 6.93871 7.02174 7.13047 7.71976 8.37832 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.023238 B = 0.002984 C = 0.002748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1204.654821 B = 9379.661533 C =10186.221690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.072 4.072 3 C -0.128 4.128 4 C 0.098 3.902 5 N -0.665 5.665 6 C 0.718 3.282 7 O -0.619 6.619 8 N -0.658 5.658 9 C 0.031 3.969 10 C -0.103 4.103 11 C -0.218 4.218 12 C 0.071 3.929 13 C -0.494 4.494 14 H 0.082 0.918 15 C 0.025 3.975 16 N -0.838 5.838 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.271 1.271 20 H -0.254 1.254 21 C -0.174 4.174 22 C -0.102 4.102 23 C 0.183 3.817 24 H 0.095 0.905 25 C -0.161 4.161 26 C -0.192 4.192 27 C -0.134 4.134 28 H 0.081 0.919 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.409 0.591 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.284 0.716 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.104 0.896 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.101 23.641 3.003 23.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.073 4.073 3 C -0.185 4.185 4 C -0.023 4.023 5 N -0.404 5.404 6 C 0.422 3.578 7 O -0.499 6.499 8 N -0.306 5.306 9 C -0.063 4.063 10 C -0.123 4.123 11 C -0.238 4.238 12 C 0.069 3.931 13 C -0.524 4.524 14 H 0.101 0.899 15 C -0.188 4.188 16 N -0.465 5.465 17 Si 0.809 3.191 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.177 1.177 21 C -0.195 4.195 22 C -0.123 4.123 23 C 0.080 3.920 24 H 0.113 0.887 25 C -0.180 4.180 26 C -0.230 4.230 27 C -0.171 4.171 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.047 0.953 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.246 0.754 37 H 0.150 0.850 38 H 0.131 0.869 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.107 0.893 44 H 0.091 0.909 45 H 0.123 0.877 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.133 22.954 2.007 23.069 hybrid contribution 0.085 -1.380 -0.206 1.398 sum 1.218 21.573 1.800 21.683 Atomic orbital electron populations 1.21456 0.92154 1.00882 1.03170 1.22226 0.96466 0.95045 0.93574 1.21640 1.00864 0.92316 1.03691 1.23455 1.02276 0.83367 0.93244 1.48838 1.77042 1.01286 1.13274 1.15578 0.78093 0.80367 0.83812 1.90907 1.59497 1.66780 1.32747 1.41794 1.75656 1.05663 1.07440 1.17080 1.05003 0.81481 1.02775 1.20366 0.97415 0.94975 0.99555 1.20847 1.05237 0.93350 1.04344 1.18012 0.89557 0.94243 0.91331 1.19813 1.43566 0.92954 0.96080 0.89945 1.26889 0.91418 1.06348 0.94110 1.69950 1.36900 1.40108 0.99524 0.85116 0.79347 0.75447 0.79217 1.18589 1.19575 1.17737 1.20936 1.02148 0.93544 1.02830 1.20569 0.99765 0.93547 0.98395 1.22530 0.98169 0.82915 0.88382 0.88730 1.22208 1.00101 1.05537 0.90158 1.22842 0.99766 0.99960 1.00389 1.22994 1.03145 0.92261 0.98722 0.90061 0.91328 0.95254 0.91344 0.90980 0.90231 0.89442 0.87865 0.75437 0.85004 0.86914 0.90528 0.88505 0.89106 0.90603 0.89329 0.90904 0.87738 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.83 8.07 71.98 0.58 -1.25 16 2 C -0.07 -1.02 1.44 -51.76 -0.07 -1.09 16 3 C -0.13 -0.94 9.25 71.98 0.67 -0.28 16 4 C 0.10 1.61 7.43 83.19 0.62 2.23 16 5 N -0.67 -18.60 3.33 -850.88 -2.84 -21.44 16 6 C 0.72 28.58 8.50 179.05 1.52 30.10 16 7 O -0.62 -31.45 14.11 -3.97 -0.06 -31.50 16 8 N -0.66 -24.88 5.31 -316.78 -1.68 -26.57 16 9 C 0.03 1.44 6.30 38.56 0.24 1.68 16 10 C -0.10 -4.57 9.90 22.13 0.22 -4.35 16 11 C -0.22 -10.88 9.74 22.48 0.22 -10.66 16 12 C 0.07 4.07 5.56 -21.27 -0.12 3.95 16 13 C -0.49 -27.80 9.05 23.39 0.21 -27.59 16 14 H 0.08 4.35 7.87 -2.91 -0.02 4.33 16 15 C 0.03 1.36 5.23 85.24 0.45 1.80 16 16 N -0.84 -48.00 10.82 21.82 0.24 -47.76 16 17 Si 0.99 40.38 29.58 68.60 2.03 42.41 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 20 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 21 C -0.17 -10.29 8.61 22.48 0.19 -10.09 16 22 C -0.10 -5.63 8.61 22.13 0.19 -5.44 16 23 C 0.18 4.04 3.63 41.88 0.15 4.19 16 24 H 0.10 1.90 8.09 -2.39 -0.02 1.88 16 25 C -0.16 -4.08 3.93 -10.80 -0.04 -4.12 16 26 C -0.19 -5.09 10.24 30.59 0.31 -4.77 16 27 C -0.13 -2.36 10.25 30.59 0.31 -2.05 16 28 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.07 1.00 7.77 -2.39 -0.02 0.98 16 30 H 0.03 0.64 7.87 -2.39 -0.02 0.62 16 31 H 0.07 0.43 8.04 -2.39 -0.02 0.41 16 32 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 34 H 0.09 1.24 8.12 -2.39 -0.02 1.22 16 35 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 36 H 0.41 11.83 8.54 -92.71 -0.79 11.03 16 37 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 38 H 0.11 5.12 8.06 -2.91 -0.02 5.10 16 39 H 0.28 14.87 8.30 -92.71 -0.77 14.10 16 40 H 0.10 6.06 6.17 -2.91 -0.02 6.04 16 41 H 0.09 5.21 6.25 -2.91 -0.02 5.19 16 42 H 0.08 2.39 7.74 -2.39 -0.02 2.37 16 43 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 44 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 45 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -76.43 376.12 3.53 -72.90 By element: Atomic # 1 Polarization: 39.51 SS G_CDS: 0.18 Total: 39.70 kcal Atomic # 6 Polarization: -33.39 SS G_CDS: 5.65 Total: -27.74 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -4.28 Total: -95.76 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -0.06 Total: -31.50 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -76.43 3.53 -72.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000289658909.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.617 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds