Wall clock time and date at job start Tue Mar 31 2020 10:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.99953 * 2 1 4 4 C 1.38205 * 119.99992 * 180.21271 * 3 2 1 5 5 C 1.38262 * 120.00144 * 359.85867 * 4 3 2 6 6 C 1.38207 * 119.99932 * 359.95311 * 5 4 3 7 7 C 1.38212 * 120.00352 * 179.81725 * 2 1 3 8 8 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47070 * 355.63415 * 8 7 2 10 10 C 1.50704 * 109.46883 * 235.63992 * 8 7 2 11 11 N 1.29949 * 126.28724 * 300.01847 * 10 8 7 12 12 O 1.21295 * 110.25146 * 179.97438 * 11 10 8 13 13 C 1.33645 * 109.81332 * 0.02562 * 12 11 10 14 14 C 1.50697 * 126.55206 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46745 * 269.97021 * 14 13 12 16 16 C 1.50704 * 109.46994 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00050 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47594 * 89.99716 * 20 18 16 22 22 H 1.48497 * 109.46934 * 209.99637 * 20 18 16 23 23 H 1.48500 * 109.47018 * 329.99685 * 20 18 16 24 24 N 1.31137 * 106.89492 * 359.76531 * 13 12 11 25 25 C 1.52999 * 109.47594 * 115.63840 * 8 7 2 26 26 C 1.53004 * 109.46903 * 299.99824 * 25 8 7 27 27 C 1.52993 * 109.47380 * 180.02562 * 25 8 7 28 28 H 1.09005 * 109.46512 * 263.94363 * 1 2 3 29 29 H 1.08997 * 109.47368 * 23.93726 * 1 2 3 30 30 H 1.08994 * 109.47471 * 143.94475 * 1 2 3 31 31 H 1.07999 * 119.99988 * 0.04256 * 3 2 1 32 32 H 1.08002 * 120.00327 * 179.83305 * 4 3 2 33 33 H 1.08000 * 120.00236 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.00543 * 179.97438 * 6 5 4 35 35 H 1.08990 * 109.47416 * 29.97156 * 14 13 12 36 36 H 1.08994 * 109.47447 * 149.97798 * 14 13 12 37 37 H 1.08997 * 109.47195 * 299.99820 * 15 14 13 38 38 H 1.09001 * 109.47156 * 60.00029 * 15 14 13 39 39 H 0.96995 * 119.99852 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.46719 * 59.99822 * 25 8 7 41 41 H 1.08994 * 109.47088 * 299.99984 * 26 25 8 42 42 H 1.08993 * 109.47152 * 179.97438 * 26 25 8 43 43 H 1.09004 * 109.46740 * 59.99669 * 26 25 8 44 44 H 1.09004 * 109.47313 * 180.02562 * 27 25 8 45 45 H 1.09005 * 109.47121 * 299.99749 * 27 25 8 46 46 H 1.09004 * 109.47230 * 59.99608 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0059 6 6 3.5807 -1.1969 -0.0020 7 6 2.1981 -1.1969 0.0038 8 6 1.4447 -2.5020 0.0086 9 1 0.3756 -2.3041 0.0865 10 6 1.8885 -3.3339 1.1842 11 7 3.0956 -3.7555 1.4160 12 8 3.1253 -4.3996 2.4434 13 6 1.9028 -4.4522 2.9806 14 6 1.5124 -5.1531 4.2563 15 6 1.1036 -6.5936 3.9420 16 6 0.7138 -7.2949 5.2177 17 1 0.7532 -6.7659 6.1585 18 6 0.3068 -8.6118 5.1839 19 7 0.2583 -9.2558 4.0383 20 14 -0.1771 -9.4808 6.7651 21 1 -1.6308 -9.2968 7.0062 22 1 0.1254 -10.9297 6.6461 23 1 0.5894 -8.9066 7.8999 24 7 1.1089 -3.7724 2.1885 25 6 1.7296 -3.2603 -1.2894 26 6 1.2790 -2.4156 -2.4829 27 6 0.9642 -4.5849 -1.2848 28 1 -0.3632 -0.1084 1.0220 29 1 -0.3634 0.9392 -0.4169 30 1 -0.3634 -0.8308 -0.6048 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1327 -0.0072 33 1 5.3517 0.0000 -0.0098 34 1 4.1206 -2.1322 -0.0036 35 1 2.3592 -5.1572 4.9424 36 1 0.6743 -4.6299 4.7165 37 1 0.2567 -6.5895 3.2558 38 1 1.9417 -7.1170 3.4817 39 1 -0.0277 -10.1824 4.0145 40 1 2.7986 -3.4582 -1.3673 41 1 0.2100 -2.2177 -2.4050 42 1 1.4824 -2.9556 -3.4076 43 1 1.8240 -1.4716 -2.4863 44 1 1.1676 -5.1254 -2.2093 45 1 1.2848 -5.1869 -0.4345 46 1 -0.1048 -4.3866 -1.2070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291038824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:54 Heat of formation + Delta-G solvation = 60.082942 kcal Electronic energy + Delta-G solvation = -26090.151538 eV Core-core repulsion = 22560.867351 eV Total energy + Delta-G solvation = -3529.284188 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -45.09536 -40.09173 -37.00257 -35.22654 -34.14841 -32.99552 -32.49046 -31.42255 -30.05517 -27.78507 -27.22089 -26.55565 -25.83309 -23.42927 -22.48604 -22.19582 -21.11079 -20.93093 -19.26274 -17.63923 -17.16629 -16.60058 -16.34875 -15.65605 -15.10660 -15.02754 -14.55195 -14.48925 -14.03993 -13.91188 -13.59499 -13.27185 -13.21306 -12.78346 -12.64704 -12.41985 -12.28848 -12.22051 -12.12696 -11.90489 -11.60409 -11.50308 -11.29519 -11.16234 -11.06991 -11.00203 -10.83758 -10.66458 -10.55785 -10.48252 -10.12054 -9.97339 -9.32902 -9.14678 -8.89099 -8.70036 -8.45393 -6.09807 -4.14419 1.18126 1.28902 1.65834 2.68278 3.28520 3.34344 3.36575 3.40478 3.58236 3.93910 4.32913 4.39462 4.65031 4.68898 4.77765 4.84283 4.85807 4.99907 5.11004 5.17242 5.25347 5.26877 5.41221 5.50643 5.55154 5.56708 5.61704 5.67333 5.71315 5.81342 5.84589 5.92629 5.99070 6.04333 6.04887 6.15975 6.20318 6.24941 6.30607 6.37169 6.41236 6.49102 6.55777 6.63579 6.90085 7.48936 7.56288 7.85841 8.21462 8.64029 8.90811 9.50496 11.01438 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020869 B = 0.002939 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.369749 B = 9525.200116 C = 9942.777502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.073 4.073 3 C -0.124 4.124 4 C -0.118 4.118 5 C -0.127 4.127 6 C -0.098 4.098 7 C -0.076 4.076 8 C 0.046 3.954 9 H 0.110 0.890 10 C 0.179 3.821 11 N -0.395 5.395 12 O 0.066 5.934 13 C 0.213 3.787 14 C -0.029 4.029 15 C 0.029 3.971 16 C -0.526 4.526 17 H 0.061 0.939 18 C 0.060 3.940 19 N -0.891 5.891 20 Si 0.897 3.103 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.272 1.272 24 N -0.494 5.494 25 C -0.083 4.083 26 C -0.144 4.144 27 C -0.147 4.147 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.121 0.879 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.130 0.870 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.026 0.974 38 H 0.023 0.977 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.594 19.017 -11.491 22.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.073 4.073 3 C -0.142 4.142 4 C -0.136 4.136 5 C -0.145 4.145 6 C -0.116 4.116 7 C -0.077 4.077 8 C 0.026 3.974 9 H 0.128 0.872 10 C -0.094 4.094 11 N -0.106 5.106 12 O 0.011 5.989 13 C -0.006 4.006 14 C -0.068 4.068 15 C -0.009 4.009 16 C -0.564 4.564 17 H 0.079 0.921 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.724 3.276 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.197 1.197 24 N -0.227 5.227 25 C -0.102 4.102 26 C -0.201 4.201 27 C -0.205 4.205 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.108 0.892 36 H 0.117 0.883 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.840 19.183 -12.213 23.062 hybrid contribution -0.185 -0.707 1.004 1.242 sum 3.655 18.476 -11.209 21.917 Atomic orbital electron populations 1.20907 0.91185 1.02767 1.02925 1.19746 0.96063 0.92346 0.99190 1.20972 0.94240 0.97195 1.01805 1.21123 0.94323 0.97945 1.00200 1.21112 0.99849 0.92394 1.01173 1.21195 0.93659 0.98736 0.98048 1.19422 0.93712 0.93166 1.01427 1.18640 1.00806 0.89292 0.88650 0.87193 1.25348 0.86159 1.00171 0.97749 1.74446 1.22031 1.12331 1.01799 1.85266 1.33796 1.52645 1.27236 1.29578 0.79385 0.93090 0.98547 1.20737 1.02218 0.98378 0.85436 1.19145 0.97432 0.86178 0.98174 1.21074 1.45568 0.96623 0.93124 0.92057 1.25008 0.95364 0.97484 0.96369 1.69965 1.47081 1.11049 1.24857 0.86514 0.78900 0.78772 0.83365 1.20552 1.21179 1.19693 1.71921 1.31281 1.15399 1.04142 1.21167 1.01253 0.95216 0.92598 1.21828 1.01423 0.99790 0.97071 1.21843 1.00441 0.96159 1.02030 0.90745 0.91474 0.90968 0.86106 0.86250 0.86174 0.85259 0.89193 0.88299 0.95543 0.95839 0.92760 0.90466 0.92417 0.92274 0.92299 0.92209 0.92728 0.92156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.13 9.14 36.00 0.33 -0.80 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.12 -1.25 9.68 -39.58 -0.38 -1.64 16 4 C -0.12 -1.18 10.05 -39.58 -0.40 -1.57 16 5 C -0.13 -1.41 10.05 -39.58 -0.40 -1.81 16 6 C -0.10 -1.27 8.58 -39.59 -0.34 -1.61 16 7 C -0.08 -0.97 3.51 -104.62 -0.37 -1.34 16 8 C 0.05 0.62 1.85 -92.92 -0.17 0.45 16 9 H 0.11 1.44 5.70 -51.93 -0.30 1.14 16 10 C 0.18 3.06 5.33 -156.37 -0.83 2.22 16 11 N -0.39 -7.06 10.51 30.90 0.32 -6.73 16 12 O 0.07 1.24 11.31 18.10 0.20 1.45 16 13 C 0.21 4.09 7.77 -13.06 -0.10 3.99 16 14 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 15 C 0.03 0.71 4.96 -27.88 -0.14 0.57 16 16 C -0.53 -14.03 9.11 -34.44 -0.31 -14.35 16 17 H 0.06 1.55 7.74 -52.48 -0.41 1.14 16 18 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 19 N -0.89 -26.05 13.29 55.43 0.74 -25.32 16 20 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 24 N -0.49 -9.43 11.55 -9.87 -0.11 -9.54 16 25 C -0.08 -1.01 2.36 -90.62 -0.21 -1.23 16 26 C -0.14 -1.40 8.95 37.16 0.33 -1.06 16 27 C -0.15 -1.94 8.95 37.15 0.33 -1.60 16 28 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 30 H 0.07 0.64 6.34 -51.93 -0.33 0.31 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 32 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 33 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.78 6.62 -52.49 -0.35 1.43 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 36 H 0.10 1.82 8.14 -51.93 -0.42 1.40 16 37 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.08 1.00 7.64 -51.93 -0.40 0.61 16 41 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.58 7.22 -51.93 -0.37 0.20 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.88 7.22 -51.93 -0.37 0.51 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 376.95 15.07 5.68 5.68 Total: -1.00 -30.00 376.95 -8.87 -38.86 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.14 Total: 0.10 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -3.54 Total: -20.36 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.95 Total: -41.59 kcal Atomic # 8 Polarization: 1.24 SS G_CDS: 0.20 Total: 1.45 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.00 -8.87 -38.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291038824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.947 kcal (2) G-P(sol) polarization free energy of solvation -29.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds