Wall clock time and date at job start Tue Mar 31 2020 10:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 119.99953 * 2 1 4 4 C 1.38205 * 119.99992 * 180.21271 * 3 2 1 5 5 C 1.38262 * 120.00144 * 359.85867 * 4 3 2 6 6 C 1.38207 * 119.99932 * 359.95311 * 5 4 3 7 7 C 1.38212 * 120.00352 * 179.81725 * 2 1 3 8 8 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.47070 * 355.63415 * 8 7 2 10 10 C 1.50704 * 109.46883 * 235.63992 * 8 7 2 11 11 N 1.29949 * 126.28724 * 300.01847 * 10 8 7 12 12 O 1.21295 * 110.25146 * 179.97438 * 11 10 8 13 13 C 1.33645 * 109.81332 * 0.02562 * 12 11 10 14 14 C 1.50697 * 126.55206 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46745 * 269.97021 * 14 13 12 16 16 C 1.50704 * 109.46994 * 179.97438 * 15 14 13 17 17 H 1.08003 * 120.00038 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00050 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99916 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00061 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47594 * 89.99716 * 20 18 16 22 22 H 1.48497 * 109.46934 * 209.99637 * 20 18 16 23 23 H 1.48500 * 109.47018 * 329.99685 * 20 18 16 24 24 N 1.31137 * 106.89492 * 359.76531 * 13 12 11 25 25 C 1.52999 * 109.47594 * 115.63840 * 8 7 2 26 26 C 1.53004 * 109.46903 * 299.99824 * 25 8 7 27 27 C 1.52993 * 109.47380 * 180.02562 * 25 8 7 28 28 H 1.09005 * 109.46512 * 263.94363 * 1 2 3 29 29 H 1.08997 * 109.47368 * 23.93726 * 1 2 3 30 30 H 1.08994 * 109.47471 * 143.94475 * 1 2 3 31 31 H 1.07999 * 119.99988 * 0.04256 * 3 2 1 32 32 H 1.08002 * 120.00327 * 179.83305 * 4 3 2 33 33 H 1.08000 * 120.00236 * 179.97438 * 5 4 3 34 34 H 1.07999 * 120.00543 * 179.97438 * 6 5 4 35 35 H 1.08990 * 109.47416 * 29.97156 * 14 13 12 36 36 H 1.08994 * 109.47447 * 149.97798 * 14 13 12 37 37 H 1.08997 * 109.47195 * 299.99820 * 15 14 13 38 38 H 1.09001 * 109.47156 * 60.00029 * 15 14 13 39 39 H 0.96995 * 119.99852 * 179.97438 * 19 18 16 40 40 H 1.08994 * 109.46719 * 59.99822 * 25 8 7 41 41 H 1.08994 * 109.47088 * 299.99984 * 26 25 8 42 42 H 1.08993 * 109.47152 * 179.97438 * 26 25 8 43 43 H 1.09004 * 109.46740 * 59.99669 * 26 25 8 44 44 H 1.09004 * 109.47313 * 180.02562 * 27 25 8 45 45 H 1.09005 * 109.47121 * 299.99749 * 27 25 8 46 46 H 1.09004 * 109.47230 * 59.99608 * 27 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5803 1.1974 -0.0044 5 6 4.2717 0.0001 -0.0059 6 6 3.5807 -1.1969 -0.0020 7 6 2.1981 -1.1969 0.0038 8 6 1.4447 -2.5020 0.0086 9 1 0.3756 -2.3041 0.0865 10 6 1.8885 -3.3339 1.1842 11 7 3.0956 -3.7555 1.4160 12 8 3.1253 -4.3996 2.4434 13 6 1.9028 -4.4522 2.9806 14 6 1.5124 -5.1531 4.2563 15 6 1.1036 -6.5936 3.9420 16 6 0.7138 -7.2949 5.2177 17 1 0.7532 -6.7659 6.1585 18 6 0.3068 -8.6118 5.1839 19 7 0.2583 -9.2558 4.0383 20 14 -0.1771 -9.4808 6.7651 21 1 -1.6308 -9.2968 7.0062 22 1 0.1254 -10.9297 6.6461 23 1 0.5894 -8.9066 7.8999 24 7 1.1089 -3.7724 2.1885 25 6 1.7296 -3.2603 -1.2894 26 6 1.2790 -2.4156 -2.4829 27 6 0.9642 -4.5849 -1.2848 28 1 -0.3632 -0.1084 1.0220 29 1 -0.3634 0.9392 -0.4169 30 1 -0.3634 -0.8308 -0.6048 31 1 1.6583 2.1327 0.0007 32 1 4.1204 2.1327 -0.0072 33 1 5.3517 0.0000 -0.0098 34 1 4.1206 -2.1322 -0.0036 35 1 2.3592 -5.1572 4.9424 36 1 0.6743 -4.6299 4.7165 37 1 0.2567 -6.5895 3.2558 38 1 1.9417 -7.1170 3.4817 39 1 -0.0277 -10.1824 4.0145 40 1 2.7986 -3.4582 -1.3673 41 1 0.2100 -2.2177 -2.4050 42 1 1.4824 -2.9556 -3.4076 43 1 1.8240 -1.4716 -2.4863 44 1 1.1676 -5.1254 -2.2093 45 1 1.2848 -5.1869 -0.4345 46 1 -0.1048 -4.3866 -1.2070 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291038824.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:53 Heat of formation + Delta-G solvation = 44.536808 kcal Electronic energy + Delta-G solvation = -26090.825669 eV Core-core repulsion = 22560.867351 eV Total energy + Delta-G solvation = -3529.958319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.55388 -40.98856 -38.04349 -36.78765 -35.80094 -34.24629 -33.79072 -32.52356 -31.64103 -28.75320 -28.13585 -27.75154 -27.42229 -24.88916 -24.01798 -23.22722 -22.51902 -21.92136 -20.39314 -19.14470 -18.66161 -18.28258 -17.47077 -16.66957 -16.50199 -16.12539 -15.96732 -15.66363 -15.41722 -15.07474 -14.76588 -14.39887 -14.29111 -14.05198 -13.87058 -13.55366 -13.42731 -13.33983 -13.09189 -13.06904 -12.96563 -12.84600 -12.78683 -12.54542 -12.29440 -12.13668 -12.09309 -12.02470 -11.97963 -11.85470 -11.56546 -11.50916 -11.34605 -10.72125 -10.57157 -9.75393 -9.53816 -8.20720 -6.32887 0.13029 0.35126 0.44913 1.25564 1.45699 1.46548 1.57734 1.88162 2.43032 2.55690 2.82148 3.10724 3.14595 3.57358 3.68993 3.80742 3.96471 4.02213 4.09314 4.18557 4.22431 4.35366 4.42328 4.49869 4.51987 4.54862 4.64145 4.68981 4.70597 4.77870 4.81832 4.87004 4.88781 4.92516 4.98226 4.99069 5.07160 5.15243 5.24664 5.28252 5.34933 5.42297 5.52198 5.55196 5.59315 5.69132 5.76969 6.08421 6.12667 6.82569 7.16545 7.37273 8.91729 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.020869 B = 0.002939 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.369749 B = 9525.200116 C = 9942.777502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.080 4.080 3 C -0.125 4.125 4 C -0.115 4.115 5 C -0.136 4.136 6 C -0.118 4.118 7 C -0.092 4.092 8 C 0.047 3.953 9 H 0.115 0.885 10 C 0.185 3.815 11 N -0.401 5.401 12 O 0.055 5.945 13 C 0.205 3.795 14 C -0.014 4.014 15 C 0.037 3.963 16 C -0.539 4.539 17 H 0.078 0.922 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.273 1.273 22 H -0.287 1.287 23 H -0.256 1.256 24 N -0.509 5.509 25 C -0.078 4.078 26 C -0.135 4.135 27 C -0.145 4.145 28 H 0.067 0.933 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.134 0.866 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.113 0.887 37 H -0.007 1.007 38 H -0.004 1.004 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.015 0.985 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.156 21.367 -11.209 24.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.080 4.080 3 C -0.142 4.142 4 C -0.133 4.133 5 C -0.154 4.154 6 C -0.136 4.136 7 C -0.092 4.092 8 C 0.027 3.973 9 H 0.133 0.867 10 C -0.089 4.089 11 N -0.113 5.113 12 O 0.002 5.998 13 C -0.014 4.014 14 C -0.053 4.053 15 C -0.002 4.002 16 C -0.577 4.577 17 H 0.096 0.904 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.794 3.206 21 H -0.199 1.199 22 H -0.213 1.213 23 H -0.180 1.180 24 N -0.243 5.243 25 C -0.097 4.097 26 C -0.192 4.192 27 C -0.202 4.202 28 H 0.086 0.914 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.166 0.834 32 H 0.165 0.835 33 H 0.152 0.848 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.012 0.988 38 H 0.014 0.986 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.034 0.966 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.418 21.544 -11.914 24.855 hybrid contribution -0.019 -1.376 0.837 1.611 sum 3.400 20.168 -11.077 23.259 Atomic orbital electron populations 1.20947 0.89936 1.04173 1.02719 1.20004 0.97112 0.92145 0.98753 1.21344 0.94526 0.97811 1.00547 1.21484 0.94604 0.98529 0.98695 1.21340 1.00747 0.92275 1.00994 1.21172 0.93968 0.98832 0.99668 1.19381 0.93660 0.93133 1.03073 1.18831 1.01145 0.89628 0.87680 0.86703 1.26016 0.85515 0.99361 0.97962 1.74455 1.22614 1.12717 1.01555 1.85251 1.33768 1.53068 1.27678 1.29496 0.79741 0.93538 0.98650 1.20498 1.03623 0.95147 0.86009 1.18917 0.95083 0.89313 0.96858 1.21563 1.44808 0.97057 0.94242 0.90415 1.26003 0.95370 0.98562 0.99859 1.70117 1.48456 1.11436 1.27443 0.85372 0.78780 0.77206 0.79251 1.19899 1.21267 1.18023 1.71923 1.31795 1.15763 1.04778 1.21134 1.00356 0.94989 0.93256 1.21760 1.02086 0.99324 0.96034 1.21835 1.00884 0.96412 1.01090 0.91440 0.89113 0.90821 0.83395 0.83457 0.84812 0.87147 0.86886 0.86921 0.98816 0.98591 0.92758 0.91764 0.91201 0.91065 0.92170 0.90622 0.96592 0.91490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.99 9.14 71.24 0.65 -1.34 16 2 C -0.08 -1.65 5.88 -19.86 -0.12 -1.76 16 3 C -0.12 -2.15 9.68 22.27 0.22 -1.93 16 4 C -0.12 -1.99 10.05 22.27 0.22 -1.77 16 5 C -0.14 -2.84 10.05 22.27 0.22 -2.61 16 6 C -0.12 -3.04 8.58 22.27 0.19 -2.85 16 7 C -0.09 -2.28 3.51 -19.87 -0.07 -2.35 16 8 C 0.05 1.28 1.85 -12.28 -0.02 1.26 16 9 H 0.12 2.97 5.70 -2.39 -0.01 2.96 16 10 C 0.18 6.49 5.33 138.46 0.74 7.23 16 11 N -0.40 -14.90 10.51 -60.32 -0.63 -15.53 16 12 O 0.05 2.15 11.31 74.83 0.85 3.00 16 13 C 0.21 8.09 7.77 88.38 0.69 8.78 16 14 C -0.01 -0.54 5.78 29.85 0.17 -0.37 16 15 C 0.04 1.87 4.96 29.85 0.15 2.01 16 16 C -0.54 -28.91 9.11 25.60 0.23 -28.68 16 17 H 0.08 3.83 7.74 -2.91 -0.02 3.81 16 18 C 0.00 0.01 5.46 84.65 0.46 0.47 16 19 N -0.93 -56.12 13.29 21.45 0.28 -55.83 16 20 Si 0.97 42.73 29.54 68.60 2.03 44.75 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 22 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.26 -10.56 7.11 99.48 0.71 -9.86 16 24 N -0.51 -19.92 11.55 -303.19 -3.50 -23.42 16 25 C -0.08 -1.91 2.36 -10.79 -0.03 -1.93 16 26 C -0.13 -2.42 8.95 71.98 0.64 -1.78 16 27 C -0.14 -3.89 8.95 71.98 0.64 -3.25 16 28 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.09 1.04 8.04 -2.39 -0.02 1.02 16 30 H 0.07 1.17 6.34 -2.39 -0.02 1.15 16 31 H 0.15 1.72 8.06 -2.91 -0.02 1.69 16 32 H 0.15 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.11 3.18 6.62 -2.91 -0.02 3.16 16 35 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 36 H 0.11 4.09 8.14 -2.39 -0.02 4.07 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 39 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 40 H 0.06 1.73 7.64 -2.39 -0.02 1.71 16 41 H 0.07 1.09 7.93 -2.39 -0.02 1.07 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.06 1.09 7.22 -2.38 -0.02 1.07 16 44 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.01 0.52 7.22 -2.38 -0.02 0.50 16 46 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -66.47 376.95 4.98 -61.49 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.96 Total: 16.43 kcal Atomic # 6 Polarization: -35.88 SS G_CDS: 5.00 Total: -30.89 kcal Atomic # 7 Polarization: -90.94 SS G_CDS: -3.85 Total: -94.79 kcal Atomic # 8 Polarization: 2.15 SS G_CDS: 0.85 Total: 3.00 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Total: -66.47 4.98 -61.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291038824.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.027 kcal (2) G-P(sol) polarization free energy of solvation -66.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds