Wall clock time and date at job start Tue Mar 31 2020 11:30:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 113.41094 * 2 1 4 4 C 1.53754 * 114.39361 * 226.79075 * 2 1 3 5 5 N 1.47070 * 87.88612 * 272.67193 * 4 2 1 6 6 C 1.34772 * 136.05442 * 152.96202 * 5 4 2 7 7 O 1.21584 * 119.99835 * 179.62985 * 6 5 4 8 8 N 1.34781 * 120.00344 * 359.63193 * 6 5 4 9 9 C 1.39949 * 119.99945 * 184.72530 * 8 6 5 10 10 C 1.39291 * 119.94791 * 213.61613 * 9 8 6 11 11 C 1.38486 * 120.43229 * 180.02562 * 10 9 8 12 12 C 1.37689 * 120.32016 * 359.67359 * 11 10 9 13 13 C 1.40745 * 119.88059 * 0.60597 * 12 11 10 14 14 C 1.41411 * 120.20740 * 179.69517 * 13 12 11 15 15 H 1.08005 * 119.99652 * 153.26534 * 14 13 12 16 16 C 1.39927 * 120.00187 * 333.26695 * 14 13 12 17 17 N 1.30828 * 119.99892 * 330.27566 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 150.27566 * 16 14 13 19 19 H 1.48500 * 109.46931 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.46890 * 299.99759 * 18 16 14 21 21 H 1.48499 * 109.47415 * 59.99742 * 18 16 14 22 22 C 1.38239 * 119.94848 * 33.60147 * 9 8 6 23 23 C 1.47060 * 87.88547 * 332.70695 * 5 4 2 24 24 H 1.09001 * 113.47114 * 142.17765 * 23 5 4 25 25 C 1.53008 * 113.47111 * 272.56185 * 23 5 4 26 26 C 1.52999 * 117.49109 * 349.24274 * 25 23 5 27 27 C 1.52995 * 117.49281 * 280.58583 * 25 23 5 28 28 H 1.08999 * 109.47102 * 286.79841 * 1 2 3 29 29 H 1.09006 * 109.47159 * 46.79851 * 1 2 3 30 30 H 1.08997 * 109.47511 * 166.79899 * 1 2 3 31 31 H 1.09002 * 109.46674 * 193.20209 * 3 2 1 32 32 H 1.09000 * 109.47388 * 313.20331 * 3 2 1 33 33 H 1.08996 * 109.46934 * 73.20147 * 3 2 1 34 34 H 1.09005 * 113.46602 * 157.94178 * 4 2 1 35 35 H 1.08999 * 113.55339 * 27.42341 * 4 2 1 36 36 H 0.96996 * 119.99740 * 4.73043 * 8 6 5 37 37 H 1.07994 * 119.78125 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.84088 * 179.97438 * 11 10 9 39 39 H 1.07991 * 120.06277 * 180.29982 * 12 11 10 40 40 H 0.97003 * 120.00226 * 353.45947 * 17 16 14 41 41 H 1.07994 * 120.15911 * 0.03382 * 22 9 8 42 42 H 1.08993 * 115.55262 * 134.90897 * 25 23 5 43 43 H 1.08999 * 117.50751 * 359.97438 * 26 25 23 44 44 H 1.08998 * 117.49430 * 145.02721 * 26 25 23 45 45 H 1.09011 * 117.49298 * 214.97306 * 27 25 23 46 46 H 1.08999 * 117.50565 * 359.96697 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1650 -0.9587 -1.0206 5 7 2.0802 -2.0143 -0.0001 6 6 1.9800 -3.3583 -0.0001 7 8 1.9353 -3.9646 1.0528 8 7 1.9293 -4.0303 -1.1674 9 6 1.7259 -5.4149 -1.1694 10 6 2.3261 -6.2045 -2.1474 11 6 2.1312 -7.5755 -2.1592 12 6 1.3467 -8.1744 -1.1992 13 6 0.7290 -7.3886 -0.2082 14 6 -0.0835 -7.9957 0.7772 15 1 -0.2019 -7.5271 1.7431 16 6 -0.7339 -9.2034 0.5010 17 7 -1.0944 -9.4869 -0.7242 18 14 -1.0874 -10.4109 1.8818 19 1 -1.7801 -11.6035 1.3311 20 1 0.1901 -10.8278 2.5138 21 1 -1.9536 -9.7612 2.8980 22 6 0.9299 -5.9969 -0.2005 23 6 2.1594 -0.9584 1.0205 24 1 1.5275 -1.1455 1.8887 25 6 3.5936 -0.5860 1.4021 26 6 4.7171 -1.4929 0.8960 27 6 4.3276 -1.5095 2.3763 28 1 -0.3633 0.2970 0.9838 29 1 -0.3634 0.7035 -0.7492 30 1 -0.3634 -1.0004 -0.2347 31 1 3.2004 1.3399 -0.2347 32 1 1.6367 2.0171 -0.7491 33 1 2.0097 1.8555 0.9838 34 1 3.1882 -0.6936 -1.2869 35 1 1.5371 -1.1457 -1.8918 36 1 2.0339 -3.5542 -2.0060 37 1 2.9468 -5.7443 -2.9019 38 1 2.6009 -8.1785 -2.9222 39 1 1.2014 -9.2444 -1.2095 40 1 -0.9975 -8.8225 -1.4244 41 1 0.4639 -5.3856 0.5580 42 1 3.8002 0.4821 1.4683 43 1 4.4347 -2.3550 0.2917 44 1 5.6631 -1.0214 0.6300 45 1 5.0176 -1.0488 3.0834 46 1 3.7888 -2.3819 2.7459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000333734583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:13 Heat of formation + Delta-G solvation = 50.485227 kcal Electronic energy + Delta-G solvation = -26371.131884 eV Core-core repulsion = 22841.431508 eV Total energy + Delta-G solvation = -3529.700376 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -41.33360 -39.08406 -37.12715 -36.20920 -34.52003 -33.13422 -32.37670 -29.65276 -28.47709 -27.83534 -26.56851 -26.20413 -25.01404 -22.38939 -21.88883 -21.21602 -20.78404 -19.65742 -18.30064 -18.04772 -17.50648 -16.34464 -16.03096 -15.53137 -15.16338 -14.71329 -14.35127 -14.16554 -14.03156 -13.96514 -13.64953 -13.48940 -12.77841 -12.53629 -12.49169 -12.24275 -12.10708 -11.90535 -11.78790 -11.54325 -11.48602 -11.48103 -11.21100 -11.02157 -10.85602 -10.50003 -10.38266 -10.35858 -10.23963 -9.85201 -9.66911 -9.46411 -9.08766 -8.85685 -8.58305 -7.58813 -7.18566 -6.92811 -4.34871 2.57167 2.75592 2.89859 3.21903 3.31269 3.43283 3.63712 3.68567 3.92844 4.08696 4.18311 4.47112 4.61697 4.67685 4.84412 4.86049 4.91027 4.99947 5.10395 5.29927 5.37276 5.47901 5.53897 5.58771 5.61493 5.65263 5.69619 5.73705 5.78184 5.84826 5.90600 6.10294 6.14413 6.16411 6.18051 6.36389 6.71030 6.88898 6.95702 7.02635 7.39559 7.56730 7.78298 7.83211 7.88283 7.96127 8.28735 8.33866 8.43557 8.87001 8.94437 9.04625 10.10236 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.003260 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.062610 B = 8585.910703 C = 8788.603817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.093 4.093 3 C -0.133 4.133 4 C 0.105 3.895 5 N -0.658 5.658 6 C 0.729 3.271 7 O -0.561 6.561 8 N -0.679 5.679 9 C 0.182 3.818 10 C -0.278 4.278 11 C -0.070 4.070 12 C -0.230 4.230 13 C 0.111 3.889 14 C -0.525 4.525 15 H 0.076 0.924 16 C 0.044 3.956 17 N -0.793 5.793 18 Si 1.062 2.938 19 H -0.275 1.275 20 H -0.274 1.274 21 H -0.276 1.276 22 C -0.215 4.215 23 C 0.190 3.810 24 H 0.088 0.912 25 C -0.165 4.165 26 C -0.169 4.169 27 C -0.172 4.172 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.393 0.607 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.297 0.703 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.948 20.198 -0.762 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.094 4.094 3 C -0.191 4.191 4 C -0.018 4.018 5 N -0.398 5.398 6 C 0.433 3.567 7 O -0.436 6.436 8 N -0.324 5.324 9 C 0.090 3.910 10 C -0.300 4.300 11 C -0.089 4.089 12 C -0.249 4.249 13 C 0.107 3.893 14 C -0.553 4.553 15 H 0.094 0.906 16 C -0.178 4.178 17 N -0.415 5.415 18 Si 0.885 3.115 19 H -0.199 1.199 20 H -0.199 1.199 21 H -0.201 1.201 22 C -0.236 4.236 23 C 0.085 3.915 24 H 0.106 0.894 25 C -0.184 4.184 26 C -0.207 4.207 27 C -0.209 4.209 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.226 0.774 37 H 0.107 0.893 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.110 0.890 41 H 0.126 0.874 42 H 0.136 0.864 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.225 17.967 0.293 18.713 hybrid contribution 0.916 1.771 -0.911 2.192 sum 6.141 19.737 -0.618 20.680 Atomic orbital electron populations 1.21506 0.91878 1.02589 1.02233 1.22214 0.96347 0.94203 0.96640 1.21698 1.00719 0.94347 1.02308 1.23175 1.00466 0.85020 0.93165 1.48750 1.78033 1.02302 1.10699 1.15281 0.77901 0.78889 0.84595 1.90985 1.56688 1.65408 1.30474 1.42545 1.75641 1.07412 1.06836 1.17283 0.96576 0.79227 0.97924 1.19922 1.11520 0.93782 1.04760 1.20349 0.97778 0.93383 0.97372 1.21091 1.04827 0.98639 1.00391 1.17516 0.90322 0.90387 0.91052 1.20517 1.26760 1.07027 1.00962 0.90604 1.26977 0.92105 0.98125 1.00629 1.70448 1.29712 1.38515 1.02815 0.83702 0.77693 0.75669 0.74410 1.19941 1.19942 1.20146 1.20982 1.05521 0.94728 1.02412 1.21817 0.93882 0.82779 0.93015 0.89427 1.22593 0.92298 0.97533 1.05994 1.22903 0.97924 1.02031 0.97795 1.22990 1.03134 1.02116 0.92628 0.91907 0.91938 0.91946 0.91847 0.92068 0.91875 0.89974 0.90946 0.77361 0.89279 0.88925 0.87967 0.88981 0.87396 0.86356 0.88801 0.89081 0.88915 0.88192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.24 37.16 0.34 -0.77 16 2 C -0.09 -0.81 1.50 -153.86 -0.23 -1.04 16 3 C -0.13 -0.80 8.01 37.16 0.30 -0.51 16 4 C 0.11 1.03 6.95 -8.37 -0.06 0.98 16 5 N -0.66 -9.29 2.20 -182.95 -0.40 -9.70 16 6 C 0.73 14.21 7.88 -86.92 -0.69 13.52 16 7 O -0.56 -13.63 14.79 5.29 0.08 -13.55 16 8 N -0.68 -13.03 5.35 -14.27 -0.08 -13.11 16 9 C 0.18 4.31 6.27 -83.76 -0.53 3.79 16 10 C -0.28 -6.31 9.97 -39.10 -0.39 -6.70 16 11 C -0.07 -1.66 10.02 -39.69 -0.40 -2.05 16 12 C -0.23 -6.11 8.15 -38.84 -0.32 -6.43 16 13 C 0.11 3.12 5.23 -106.85 -0.56 2.56 16 14 C -0.52 -14.89 8.93 -37.74 -0.34 -15.23 16 15 H 0.08 2.16 8.00 -52.48 -0.42 1.74 16 16 C 0.04 1.17 4.80 -17.35 -0.08 1.08 16 17 N -0.79 -21.62 12.41 55.55 0.69 -20.93 16 18 Si 1.06 22.61 30.02 -169.99 -5.10 17.50 16 19 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.61 7.11 56.52 0.40 -5.20 16 22 C -0.21 -5.81 8.39 -38.69 -0.32 -6.13 16 23 C 0.19 2.22 4.16 -72.40 -0.30 1.91 16 24 H 0.09 1.17 8.12 -51.93 -0.42 0.75 16 25 C -0.16 -1.67 4.74 -90.62 -0.43 -2.10 16 26 C -0.17 -1.96 9.41 -26.69 -0.25 -2.22 16 27 C -0.17 -2.05 10.25 -26.69 -0.27 -2.32 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.06 0.71 7.93 -51.93 -0.41 0.30 16 31 H 0.06 0.36 6.83 -51.93 -0.35 0.00 16 32 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 33 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 34 H 0.08 0.71 7.40 -51.93 -0.38 0.32 16 35 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 36 H 0.39 6.10 8.54 -40.82 -0.35 5.75 16 37 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.09 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.10 2.77 6.76 -52.49 -0.36 2.42 16 40 H 0.30 8.31 7.16 -40.82 -0.29 8.02 16 41 H 0.11 3.07 6.40 -52.49 -0.34 2.74 16 42 H 0.12 0.92 6.46 -51.93 -0.34 0.58 16 43 H 0.09 1.38 6.69 -51.93 -0.35 1.03 16 44 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.91 8.14 -51.92 -0.42 0.49 16 46 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -32.15 371.49 -10.77 -42.92 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -7.03 Total: 12.91 kcal Atomic # 6 Polarization: -17.13 SS G_CDS: -4.52 Total: -21.65 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: 0.21 Total: -43.73 kcal Atomic # 8 Polarization: -13.63 SS G_CDS: 0.08 Total: -13.55 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.10 Total: 17.50 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.15 -10.77 -42.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333734583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.405 kcal (2) G-P(sol) polarization free energy of solvation -32.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.919 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds