Wall clock time and date at job start Tue Mar 31 2020 11:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53008 * 113.41094 * 2 1 4 4 C 1.53754 * 114.39361 * 226.79075 * 2 1 3 5 5 N 1.47070 * 87.88612 * 272.67193 * 4 2 1 6 6 C 1.34772 * 136.05442 * 152.96202 * 5 4 2 7 7 O 1.21584 * 119.99835 * 179.62985 * 6 5 4 8 8 N 1.34781 * 120.00344 * 359.63193 * 6 5 4 9 9 C 1.39949 * 119.99945 * 184.72530 * 8 6 5 10 10 C 1.39291 * 119.94791 * 213.61613 * 9 8 6 11 11 C 1.38486 * 120.43229 * 180.02562 * 10 9 8 12 12 C 1.37689 * 120.32016 * 359.67359 * 11 10 9 13 13 C 1.40745 * 119.88059 * 0.60597 * 12 11 10 14 14 C 1.41411 * 120.20740 * 179.69517 * 13 12 11 15 15 H 1.08005 * 119.99652 * 153.26534 * 14 13 12 16 16 C 1.39927 * 120.00187 * 333.26695 * 14 13 12 17 17 N 1.30828 * 119.99892 * 330.27566 * 16 14 13 18 18 Si 1.86800 * 119.99907 * 150.27566 * 16 14 13 19 19 H 1.48500 * 109.46931 * 179.97438 * 18 16 14 20 20 H 1.48497 * 109.46890 * 299.99759 * 18 16 14 21 21 H 1.48499 * 109.47415 * 59.99742 * 18 16 14 22 22 C 1.38239 * 119.94848 * 33.60147 * 9 8 6 23 23 C 1.47060 * 87.88547 * 332.70695 * 5 4 2 24 24 H 1.09001 * 113.47114 * 142.17765 * 23 5 4 25 25 C 1.53008 * 113.47111 * 272.56185 * 23 5 4 26 26 C 1.52999 * 117.49109 * 349.24274 * 25 23 5 27 27 C 1.52995 * 117.49281 * 280.58583 * 25 23 5 28 28 H 1.08999 * 109.47102 * 286.79841 * 1 2 3 29 29 H 1.09006 * 109.47159 * 46.79851 * 1 2 3 30 30 H 1.08997 * 109.47511 * 166.79899 * 1 2 3 31 31 H 1.09002 * 109.46674 * 193.20209 * 3 2 1 32 32 H 1.09000 * 109.47388 * 313.20331 * 3 2 1 33 33 H 1.08996 * 109.46934 * 73.20147 * 3 2 1 34 34 H 1.09005 * 113.46602 * 157.94178 * 4 2 1 35 35 H 1.08999 * 113.55339 * 27.42341 * 4 2 1 36 36 H 0.96996 * 119.99740 * 4.73043 * 8 6 5 37 37 H 1.07994 * 119.78125 * 359.97438 * 10 9 8 38 38 H 1.07997 * 119.84088 * 179.97438 * 11 10 9 39 39 H 1.07991 * 120.06277 * 180.29982 * 12 11 10 40 40 H 0.97003 * 120.00226 * 353.45947 * 17 16 14 41 41 H 1.07994 * 120.15911 * 0.03382 * 22 9 8 42 42 H 1.08993 * 115.55262 * 134.90897 * 25 23 5 43 43 H 1.08999 * 117.50751 * 359.97438 * 26 25 23 44 44 H 1.08998 * 117.49430 * 145.02721 * 26 25 23 45 45 H 1.09011 * 117.49298 * 214.97306 * 27 25 23 46 46 H 1.08999 * 117.50565 * 359.96697 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1379 1.4041 0.0000 4 6 2.1650 -0.9587 -1.0206 5 7 2.0802 -2.0143 -0.0001 6 6 1.9800 -3.3583 -0.0001 7 8 1.9353 -3.9646 1.0528 8 7 1.9293 -4.0303 -1.1674 9 6 1.7259 -5.4149 -1.1694 10 6 2.3261 -6.2045 -2.1474 11 6 2.1312 -7.5755 -2.1592 12 6 1.3467 -8.1744 -1.1992 13 6 0.7290 -7.3886 -0.2082 14 6 -0.0835 -7.9957 0.7772 15 1 -0.2019 -7.5271 1.7431 16 6 -0.7339 -9.2034 0.5010 17 7 -1.0944 -9.4869 -0.7242 18 14 -1.0874 -10.4109 1.8818 19 1 -1.7801 -11.6035 1.3311 20 1 0.1901 -10.8278 2.5138 21 1 -1.9536 -9.7612 2.8980 22 6 0.9299 -5.9969 -0.2005 23 6 2.1594 -0.9584 1.0205 24 1 1.5275 -1.1455 1.8887 25 6 3.5936 -0.5860 1.4021 26 6 4.7171 -1.4929 0.8960 27 6 4.3276 -1.5095 2.3763 28 1 -0.3633 0.2970 0.9838 29 1 -0.3634 0.7035 -0.7492 30 1 -0.3634 -1.0004 -0.2347 31 1 3.2004 1.3399 -0.2347 32 1 1.6367 2.0171 -0.7491 33 1 2.0097 1.8555 0.9838 34 1 3.1882 -0.6936 -1.2869 35 1 1.5371 -1.1457 -1.8918 36 1 2.0339 -3.5542 -2.0060 37 1 2.9468 -5.7443 -2.9019 38 1 2.6009 -8.1785 -2.9222 39 1 1.2014 -9.2444 -1.2095 40 1 -0.9975 -8.8225 -1.4244 41 1 0.4639 -5.3856 0.5580 42 1 3.8002 0.4821 1.4683 43 1 4.4347 -2.3550 0.2917 44 1 5.6631 -1.0214 0.6300 45 1 5.0176 -1.0488 3.0834 46 1 3.7888 -2.3819 2.7459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000333734583.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:11 Heat of formation + Delta-G solvation = 32.600570 kcal Electronic energy + Delta-G solvation = -26371.907421 eV Core-core repulsion = 22841.431508 eV Total energy + Delta-G solvation = -3530.475913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.41435 -40.68289 -38.97851 -37.12892 -36.40247 -34.94618 -33.45524 -31.67778 -30.16295 -28.53715 -27.56875 -27.31874 -27.07064 -23.51626 -23.34008 -22.90852 -22.12109 -21.16540 -20.09156 -19.21160 -18.78169 -17.77088 -17.34948 -16.86425 -16.50321 -16.35852 -15.99005 -15.67868 -15.43626 -15.11818 -14.87407 -14.69135 -14.48149 -14.11399 -13.83434 -13.46167 -13.38543 -13.08948 -12.99014 -12.81289 -12.71413 -12.51602 -12.43419 -12.37480 -12.11491 -11.96686 -11.95420 -11.65792 -11.59685 -11.29648 -11.19305 -10.92170 -10.86466 -10.73759 -9.80711 -9.64909 -9.27301 -8.83043 -6.50722 0.75818 0.89503 1.33351 1.45966 1.58093 1.77658 2.07837 2.29455 2.62155 2.74125 2.82952 3.14373 3.49607 3.57490 3.86251 3.92966 4.03508 4.13024 4.16332 4.25969 4.30682 4.50124 4.51732 4.55961 4.69404 4.70458 4.76221 4.79539 4.83222 4.91795 4.94255 5.00930 5.02260 5.09141 5.11268 5.13929 5.17932 5.21802 5.32012 5.50908 5.51720 5.63538 5.75036 5.80874 5.86323 6.20175 6.25738 6.38770 6.78804 6.85995 6.94260 7.50234 7.97122 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018526 B = 0.003260 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.062610 B = 8585.910703 C = 8788.603817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 C -0.128 4.128 4 C 0.103 3.897 5 N -0.657 5.657 6 C 0.723 3.277 7 O -0.622 6.622 8 N -0.669 5.669 9 C 0.190 3.810 10 C -0.261 4.261 11 C -0.066 4.066 12 C -0.248 4.248 13 C 0.085 3.915 14 C -0.569 4.569 15 H 0.054 0.946 16 C 0.013 3.987 17 N -0.804 5.804 18 Si 1.113 2.887 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.262 1.262 22 C -0.244 4.244 23 C 0.173 3.827 24 H 0.059 0.941 25 C -0.140 4.140 26 C -0.168 4.168 27 C -0.191 4.191 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.028 0.972 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.084 0.916 36 H 0.414 0.586 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.090 0.910 40 H 0.282 0.718 41 H 0.077 0.923 42 H 0.160 0.840 43 H 0.059 0.941 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.789 23.257 -2.655 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.072 4.072 3 C -0.186 4.186 4 C -0.019 4.019 5 N -0.395 5.395 6 C 0.427 3.573 7 O -0.501 6.501 8 N -0.316 5.316 9 C 0.096 3.904 10 C -0.283 4.283 11 C -0.085 4.085 12 C -0.268 4.268 13 C 0.082 3.918 14 C -0.597 4.597 15 H 0.072 0.928 16 C -0.204 4.204 17 N -0.426 5.426 18 Si 0.930 3.070 19 H -0.185 1.185 20 H -0.191 1.191 21 H -0.187 1.187 22 C -0.266 4.266 23 C 0.069 3.931 24 H 0.078 0.922 25 C -0.158 4.158 26 C -0.205 4.205 27 C -0.228 4.228 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.102 0.898 36 H 0.251 0.749 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.108 0.892 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.177 0.823 43 H 0.077 0.923 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.080 21.136 -1.657 22.352 hybrid contribution 0.424 1.040 -0.393 1.190 sum 7.504 22.176 -2.050 23.501 Atomic orbital electron populations 1.21541 0.92334 1.01276 1.03215 1.22150 0.95890 0.95395 0.93744 1.21720 1.01448 0.91775 1.03638 1.23571 1.02369 0.82971 0.92939 1.48802 1.75946 1.00938 1.13797 1.15511 0.77638 0.80570 0.83615 1.90945 1.59214 1.67496 1.32490 1.42305 1.75414 1.05923 1.07974 1.17381 0.94885 0.81478 0.96696 1.20396 1.10063 0.93356 1.04443 1.20776 0.96355 0.94370 0.96960 1.21075 1.06257 0.98039 1.01416 1.17819 0.90937 0.91163 0.91913 1.20638 1.29311 1.09154 1.00646 0.92765 1.28377 0.90669 0.99102 1.02271 1.70562 1.31027 1.37974 1.03019 0.83080 0.78225 0.73910 0.71791 1.18456 1.19084 1.18699 1.20889 1.07779 0.94456 1.03510 1.22242 0.95281 0.82848 0.92743 0.92243 1.22693 0.90444 0.99058 1.03625 1.22877 0.99707 1.01423 0.96500 1.22954 1.04371 1.01684 0.93748 0.91698 0.89348 0.95276 0.90426 0.90278 0.90890 0.87433 0.89786 0.74873 0.84787 0.85106 0.89179 0.90613 0.90447 0.82260 0.92256 0.86006 0.86326 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.07 9.24 71.98 0.67 -1.40 16 2 C -0.07 -1.04 1.50 -51.76 -0.08 -1.11 16 3 C -0.13 -0.90 8.01 71.98 0.58 -0.32 16 4 C 0.10 1.74 6.95 83.26 0.58 2.32 16 5 N -0.66 -18.61 2.20 -850.98 -1.87 -20.49 16 6 C 0.72 29.44 7.88 179.05 1.41 30.85 16 7 O -0.62 -32.84 14.79 -3.98 -0.06 -32.90 16 8 N -0.67 -25.80 5.35 -317.33 -1.70 -27.50 16 9 C 0.19 9.12 6.27 38.10 0.24 9.36 16 10 C -0.26 -11.35 9.97 22.58 0.23 -11.12 16 11 C -0.07 -3.05 10.02 22.20 0.22 -2.83 16 12 C -0.25 -13.61 8.15 22.75 0.19 -13.42 16 13 C 0.08 5.09 5.23 -21.31 -0.11 4.98 16 14 C -0.57 -34.76 8.93 23.46 0.21 -34.55 16 15 H 0.05 3.40 8.00 -2.91 -0.02 3.38 16 16 C 0.01 0.73 4.80 85.25 0.41 1.14 16 17 N -0.80 -45.61 12.41 21.82 0.27 -45.33 16 18 Si 1.11 47.01 30.02 68.60 2.06 49.07 16 19 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 20 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 22 C -0.24 -14.12 8.39 22.85 0.19 -13.92 16 23 C 0.17 3.94 4.16 41.79 0.17 4.12 16 24 H 0.06 1.69 8.12 -2.39 -0.02 1.67 16 25 C -0.14 -2.52 4.74 -10.79 -0.05 -2.57 16 26 C -0.17 -3.61 9.41 30.62 0.29 -3.32 16 27 C -0.19 -4.53 10.25 30.62 0.31 -4.21 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.09 1.00 8.13 -2.38 -0.02 0.98 16 30 H 0.03 0.66 7.93 -2.39 -0.02 0.64 16 31 H 0.08 0.39 6.83 -2.39 -0.02 0.37 16 32 H 0.08 0.37 8.13 -2.39 -0.02 0.35 16 33 H 0.07 0.44 8.13 -2.39 -0.02 0.42 16 34 H 0.11 1.37 7.40 -2.38 -0.02 1.35 16 35 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 36 H 0.41 12.14 8.54 -92.71 -0.79 11.35 16 37 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 38 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 39 H 0.09 5.08 6.76 -2.92 -0.02 5.06 16 40 H 0.28 16.61 7.16 -92.71 -0.66 15.95 16 41 H 0.08 4.86 6.40 -2.91 -0.02 4.84 16 42 H 0.16 1.65 6.46 -2.39 -0.02 1.64 16 43 H 0.06 1.72 6.69 -2.39 -0.02 1.71 16 44 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.12 2.15 8.14 -2.38 -0.02 2.14 16 46 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -79.69 371.49 4.45 -75.24 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: 0.30 Total: 37.94 kcal Atomic # 6 Polarization: -41.49 SS G_CDS: 5.45 Total: -36.04 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -3.30 Total: -93.32 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.06 Total: -32.90 kcal Atomic # 14 Polarization: 47.01 SS G_CDS: 2.06 Total: 49.07 kcal Total: -79.69 4.45 -75.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000333734583.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.841 kcal (2) G-P(sol) polarization free energy of solvation -79.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds