Wall clock time and date at job start Tue Mar 31 2020 11:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.50708 * 109.47098 * 239.99945 * 2 1 3 5 5 H 1.07998 * 119.99786 * 239.99742 * 4 2 1 6 6 C 1.37880 * 119.99612 * 59.99966 * 4 2 1 7 7 N 1.31506 * 120.00223 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99713 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47117 * 59.99781 * 8 6 4 10 10 H 1.48492 * 109.47128 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46910 * 300.00049 * 8 6 4 12 12 C 1.52996 * 109.47100 * 120.00128 * 2 1 3 13 13 N 1.46496 * 109.47277 * 300.00208 * 12 2 1 14 14 C 1.34779 * 120.00403 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99643 * 5.04957 * 14 13 12 16 16 N 1.34777 * 120.00462 * 185.05539 * 14 13 12 17 17 C 1.46389 * 119.73115 * 175.04628 * 16 14 13 18 18 C 1.53828 * 114.95052 * 137.48103 * 17 16 14 19 19 S 1.79888 * 111.14270 * 316.92259 * 18 17 16 20 20 C 1.82224 * 103.24065 * 84.01483 * 19 18 17 21 21 C 1.52997 * 108.84370 * 165.23433 * 20 19 18 22 22 C 1.52994 * 108.76684 * 46.81284 * 20 19 18 23 23 C 1.45821 * 112.64407 * 286.04703 * 20 19 18 24 24 C 1.44677 * 119.72307 * 355.01781 * 16 14 13 25 25 H 1.08997 * 109.47125 * 299.99896 * 1 2 3 26 26 H 1.08999 * 109.46801 * 60.00125 * 1 2 3 27 27 H 1.09006 * 109.47150 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46495 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47202 * 299.99629 * 3 2 1 30 30 H 1.09000 * 109.46849 * 60.00559 * 3 2 1 31 31 H 0.97003 * 120.00383 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47568 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47000 * 60.00054 * 12 2 1 34 34 H 0.97000 * 120.00075 * 359.97438 * 13 12 2 35 35 H 1.08999 * 108.38152 * 258.90119 * 17 16 14 36 36 H 1.09002 * 108.38539 * 16.05923 * 17 16 14 37 37 H 1.09000 * 109.14563 * 77.38131 * 18 17 16 38 38 H 1.09004 * 109.13931 * 196.52133 * 18 17 16 39 39 H 1.09003 * 109.47268 * 183.12028 * 21 20 19 40 40 H 1.09001 * 109.47429 * 63.12306 * 21 20 19 41 41 H 1.08997 * 109.47499 * 303.12065 * 21 20 19 42 42 H 1.09001 * 109.46949 * 178.44625 * 22 20 19 43 43 H 1.09007 * 109.46630 * 298.43691 * 22 20 19 44 44 H 1.08998 * 109.47505 * 58.44039 * 22 20 19 45 45 H 1.09003 * 108.71920 * 186.10534 * 23 20 19 46 46 H 1.08999 * 108.72031 * 304.26499 * 23 20 19 47 47 H 1.09006 * 109.47396 * 158.51454 * 24 16 14 48 48 H 1.08997 * 109.48533 * 38.49856 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8281 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.6506 -1.4226 3.7827 16 7 1.3468 0.0816 4.7681 17 6 1.6184 -0.4903 6.0880 18 6 1.9250 0.5380 7.1902 19 16 3.0327 1.8219 6.5897 20 6 1.9049 2.9986 5.7749 21 6 2.6495 4.3143 5.5393 22 6 0.7164 3.2632 6.7012 23 6 1.4056 2.5046 4.4970 24 6 0.5137 1.2567 4.6332 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1618 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2491 34 1 0.9943 0.7581 2.3564 35 1 0.7509 -1.0747 6.3946 36 1 2.4695 -1.1658 6.0015 37 1 0.9929 0.9957 7.5214 38 1 2.3918 0.0294 8.0337 39 1 1.9680 5.0443 5.1024 40 1 3.4834 4.1431 4.8586 41 1 3.0275 4.6930 6.4889 42 1 0.0476 3.9875 6.2362 43 1 0.1779 2.3317 6.8762 44 1 1.0767 3.6586 7.6508 45 1 0.8294 3.2957 4.0171 46 1 2.2557 2.2571 3.8613 47 1 -0.1191 1.3567 5.5152 48 1 -0.1122 1.1588 3.7462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335590452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:10 Heat of formation + Delta-G solvation = -29.522481 kcal Electronic energy + Delta-G solvation = -26034.253669 eV Core-core repulsion = 22636.527850 eV Total energy + Delta-G solvation = -3397.725819 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.25705 -37.91460 -36.50341 -35.10211 -33.42466 -31.70795 -30.45074 -29.07540 -27.62677 -25.70993 -25.61920 -24.91833 -24.31087 -22.78181 -20.90792 -19.32133 -18.80449 -17.70633 -16.67138 -16.41552 -15.81670 -15.69234 -15.26268 -14.79846 -14.69254 -14.40355 -14.05940 -13.74438 -13.43363 -13.15553 -12.85831 -12.73627 -12.64914 -12.31050 -12.20754 -12.09587 -11.97528 -11.60837 -11.43253 -11.35336 -11.17006 -11.05591 -10.88316 -10.82254 -10.70675 -10.36265 -10.18305 -9.77741 -9.66374 -9.60760 -9.27883 -8.77814 -8.63995 -8.38143 -8.11241 -7.71657 -6.00159 -4.09815 1.54571 2.39198 2.98948 3.31913 3.35852 3.40165 3.62691 4.25991 4.36746 4.45507 4.47955 4.66539 4.67934 4.77292 4.96027 5.17880 5.20185 5.26678 5.26960 5.35236 5.46500 5.50365 5.52465 5.63675 5.68013 5.76562 5.82771 5.93449 6.11089 6.23139 6.39955 6.52543 6.67771 6.82708 6.83823 6.94162 7.05453 7.13988 7.27229 7.41625 7.57635 7.71577 8.02952 8.14209 8.39852 8.46575 8.89723 9.07217 9.55760 11.01247 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.003521 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.000450 B = 7950.782617 C = 8477.042289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.057 3.943 3 C -0.128 4.128 4 C -0.505 4.505 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.149 3.851 13 N -0.731 5.731 14 C 0.704 3.296 15 O -0.594 6.594 16 N -0.621 5.621 17 C 0.130 3.870 18 C -0.111 4.111 19 S -0.232 6.232 20 C -0.017 4.017 21 C -0.130 4.130 22 C -0.155 4.155 23 C -0.142 4.142 24 C 0.104 3.896 25 H 0.003 0.997 26 H 0.085 0.915 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.085 0.915 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.393 0.607 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.069 0.931 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.475 7.056 19.069 20.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.056 3.944 3 C -0.186 4.186 4 C -0.544 4.544 5 H 0.075 0.925 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.026 3.974 13 N -0.386 5.386 14 C 0.406 3.594 15 O -0.473 6.473 16 N -0.359 5.359 17 C 0.003 3.997 18 C -0.260 4.260 19 S -0.004 6.004 20 C -0.127 4.127 21 C -0.188 4.188 22 C -0.213 4.213 23 C -0.183 4.183 24 C -0.021 4.021 25 H 0.022 0.978 26 H 0.103 0.897 27 H 0.045 0.955 28 H 0.046 0.954 29 H 0.103 0.897 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.230 0.770 35 H 0.078 0.922 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.101 0.899 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.878 6.506 19.080 20.246 hybrid contribution -1.285 -0.130 -0.952 1.604 sum -3.163 6.376 18.129 19.476 Atomic orbital electron populations 1.21812 0.97864 0.99098 0.99845 1.18351 0.92701 0.92790 0.90561 1.21805 0.98612 0.98328 0.99846 1.20952 1.31439 1.12099 0.89866 0.92468 1.24864 0.94861 0.94918 0.98790 1.69789 1.36737 1.22740 1.23266 0.86638 0.79277 0.79789 0.82187 1.20296 1.21367 1.20273 1.21589 0.98066 0.95287 0.82468 1.45608 1.55548 1.32980 1.04486 1.15907 0.80509 0.82400 0.80592 1.90862 1.38839 1.31970 1.85599 1.46484 1.53270 1.30658 1.05456 1.21297 1.02567 0.94656 0.81136 1.23912 1.02188 0.98706 1.01204 1.86733 1.17539 1.23375 1.72753 1.21287 0.96959 0.96942 0.97495 1.21746 1.00508 0.93897 1.02669 1.22353 0.97118 1.02185 0.99644 1.21268 1.01633 0.98475 0.96909 1.21467 0.92837 0.84652 1.03162 0.97776 0.89651 0.95479 0.95437 0.89681 0.97702 0.93005 0.92859 0.93105 0.77046 0.92155 0.88620 0.89432 0.86857 0.91065 0.91642 0.91643 0.91190 0.91953 0.91477 0.89933 0.89955 0.90035 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.89 8.08 37.16 0.30 -2.59 16 2 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 3 C -0.13 -2.90 8.08 37.16 0.30 -2.60 16 4 C -0.50 -13.29 8.01 -34.44 -0.28 -13.56 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 7 N -0.89 -23.53 9.35 55.43 0.52 -23.01 16 8 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.15 3.26 4.51 -4.05 -0.02 3.24 16 13 N -0.73 -13.52 4.81 -65.23 -0.31 -13.83 16 14 C 0.70 13.02 7.91 -86.92 -0.69 12.33 16 15 O -0.59 -13.28 15.68 5.29 0.08 -13.20 16 16 N -0.62 -8.63 2.40 -179.81 -0.43 -9.06 16 17 C 0.13 1.55 6.02 -3.67 -0.02 1.53 16 18 C -0.11 -1.04 5.72 37.59 0.21 -0.83 16 19 S -0.23 -2.71 20.54 -107.50 -2.21 -4.92 16 20 C -0.02 -0.16 0.76 -94.02 -0.07 -0.24 16 21 C -0.13 -1.15 8.27 37.16 0.31 -0.84 16 22 C -0.15 -1.12 7.42 37.15 0.28 -0.84 16 23 C -0.14 -1.51 3.95 -29.61 -0.12 -1.63 16 24 C 0.10 1.12 4.88 -4.50 -0.02 1.10 16 25 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 26 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 2.11 6.07 -51.93 -0.32 1.80 16 30 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 31 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 32 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.05 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.39 6.59 3.91 -40.82 -0.16 6.43 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 1.38 6.92 -51.93 -0.36 1.03 16 37 H 0.09 0.67 5.42 -51.79 -0.28 0.39 16 38 H 0.11 0.91 8.14 -51.78 -0.42 0.48 16 39 H 0.07 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.43 3.94 -51.93 -0.20 0.23 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.08 0.75 8.04 -51.93 -0.42 0.33 16 46 H 0.08 1.13 7.81 -51.93 -0.41 0.72 16 47 H 0.08 0.70 5.29 -51.93 -0.27 0.43 16 48 H 0.08 0.89 6.65 -51.93 -0.35 0.54 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -29.56 362.33 -9.88 -39.44 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -7.98 Total: 5.36 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.01 Total: -2.01 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.23 Total: -45.91 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Atomic # 16 Polarization: -2.71 SS G_CDS: -2.21 Total: -4.92 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.56 -9.88 -39.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.920 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds