Wall clock time and date at job start Tue Mar 31 2020 11:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47079 * 2 1 4 4 C 1.50708 * 109.47098 * 239.99945 * 2 1 3 5 5 H 1.07998 * 119.99786 * 239.99742 * 4 2 1 6 6 C 1.37880 * 119.99612 * 59.99966 * 4 2 1 7 7 N 1.31506 * 120.00223 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99713 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47117 * 59.99781 * 8 6 4 10 10 H 1.48492 * 109.47128 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46910 * 300.00049 * 8 6 4 12 12 C 1.52996 * 109.47100 * 120.00128 * 2 1 3 13 13 N 1.46496 * 109.47277 * 300.00208 * 12 2 1 14 14 C 1.34779 * 120.00403 * 180.02562 * 13 12 2 15 15 O 1.21585 * 119.99643 * 5.04957 * 14 13 12 16 16 N 1.34777 * 120.00462 * 185.05539 * 14 13 12 17 17 C 1.46389 * 119.73115 * 175.04628 * 16 14 13 18 18 C 1.53828 * 114.95052 * 137.48103 * 17 16 14 19 19 S 1.79888 * 111.14270 * 316.92259 * 18 17 16 20 20 C 1.82224 * 103.24065 * 84.01483 * 19 18 17 21 21 C 1.52997 * 108.84370 * 165.23433 * 20 19 18 22 22 C 1.52994 * 108.76684 * 46.81284 * 20 19 18 23 23 C 1.45821 * 112.64407 * 286.04703 * 20 19 18 24 24 C 1.44677 * 119.72307 * 355.01781 * 16 14 13 25 25 H 1.08997 * 109.47125 * 299.99896 * 1 2 3 26 26 H 1.08999 * 109.46801 * 60.00125 * 1 2 3 27 27 H 1.09006 * 109.47150 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46495 * 179.97438 * 3 2 1 29 29 H 1.08999 * 109.47202 * 299.99629 * 3 2 1 30 30 H 1.09000 * 109.46849 * 60.00559 * 3 2 1 31 31 H 0.97003 * 120.00383 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47568 * 179.97438 * 12 2 1 33 33 H 1.09006 * 109.47000 * 60.00054 * 12 2 1 34 34 H 0.97000 * 120.00075 * 359.97438 * 13 12 2 35 35 H 1.08999 * 108.38152 * 258.90119 * 17 16 14 36 36 H 1.09002 * 108.38539 * 16.05923 * 17 16 14 37 37 H 1.09000 * 109.14563 * 77.38131 * 18 17 16 38 38 H 1.09004 * 109.13931 * 196.52133 * 18 17 16 39 39 H 1.09003 * 109.47268 * 183.12028 * 21 20 19 40 40 H 1.09001 * 109.47429 * 63.12306 * 21 20 19 41 41 H 1.08997 * 109.47499 * 303.12065 * 21 20 19 42 42 H 1.09001 * 109.46949 * 178.44625 * 22 20 19 43 43 H 1.09007 * 109.46630 * 298.43691 * 22 20 19 44 44 H 1.08998 * 109.47505 * 58.44039 * 22 20 19 45 45 H 1.09003 * 108.71920 * 186.10534 * 23 20 19 46 46 H 1.08999 * 108.72031 * 304.26499 * 23 20 19 47 47 H 1.09006 * 109.47396 * 158.51454 * 24 16 14 48 48 H 1.08997 * 109.48533 * 38.49856 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9436 0.8302 -2.6034 8 14 2.3224 -1.1195 -4.0080 9 1 1.8281 -2.5198 -4.0082 10 1 1.8279 -0.4192 -5.2204 11 1 3.8075 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5516 -0.0308 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.6506 -1.4226 3.7827 16 7 1.3468 0.0816 4.7681 17 6 1.6184 -0.4903 6.0880 18 6 1.9250 0.5380 7.1902 19 16 3.0327 1.8219 6.5897 20 6 1.9049 2.9986 5.7749 21 6 2.6495 4.3143 5.5393 22 6 0.7164 3.2632 6.7012 23 6 1.4056 2.5046 4.4970 24 6 0.5137 1.2567 4.6332 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 0.7095 1.1618 -3.4844 32 1 3.1300 -0.7217 1.2490 33 1 1.6766 -1.7490 1.2491 34 1 0.9943 0.7581 2.3564 35 1 0.7509 -1.0747 6.3946 36 1 2.4695 -1.1658 6.0015 37 1 0.9929 0.9957 7.5214 38 1 2.3918 0.0294 8.0337 39 1 1.9680 5.0443 5.1024 40 1 3.4834 4.1431 4.8586 41 1 3.0275 4.6930 6.4889 42 1 0.0476 3.9875 6.2362 43 1 0.1779 2.3317 6.8762 44 1 1.0767 3.6586 7.6508 45 1 0.8294 3.2957 4.0171 46 1 2.2557 2.2571 3.8613 47 1 -0.1191 1.3567 5.5152 48 1 -0.1122 1.1588 3.7462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335590452.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:10 Heat of formation + Delta-G solvation = -45.374256 kcal Electronic energy + Delta-G solvation = -26034.941054 eV Core-core repulsion = 22636.527850 eV Total energy + Delta-G solvation = -3398.413204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.55285 -39.00933 -38.16051 -36.23407 -35.09793 -33.11338 -31.90545 -29.99160 -28.27752 -27.56245 -27.45977 -26.70281 -25.17300 -23.93660 -21.84137 -20.67556 -20.57306 -18.95022 -17.85767 -17.64631 -17.37495 -16.67270 -16.63968 -16.28789 -15.87539 -15.51846 -15.26561 -15.13793 -14.79141 -14.43342 -14.18907 -14.10800 -13.91386 -13.39970 -13.19701 -13.12521 -13.04342 -12.90153 -12.72677 -12.67785 -12.61800 -12.44300 -12.24373 -12.23103 -12.11775 -11.89103 -11.63831 -11.48223 -11.27766 -11.06873 -10.70919 -10.55723 -10.38637 -10.07439 -9.46034 -8.61876 -8.01245 -6.16551 0.76142 1.44930 1.45928 1.52276 1.58213 1.79768 2.17993 2.46922 3.10687 3.22386 3.53344 3.68873 3.81545 3.93847 4.01344 4.20677 4.37039 4.42962 4.50750 4.53051 4.55074 4.63362 4.70401 4.74024 4.78637 4.79828 4.85814 4.90453 4.94765 5.00310 5.05297 5.10256 5.14818 5.20044 5.24575 5.36852 5.39140 5.61168 5.66311 5.67674 5.68368 5.95185 6.15577 6.22119 6.44755 6.86604 7.04657 7.50807 7.61874 8.97611 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022908 B = 0.003521 C = 0.003302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.000450 B = 7950.782617 C = 8477.042289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.053 3.947 3 C -0.116 4.116 4 C -0.530 4.530 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.944 3.056 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.279 1.279 12 C 0.167 3.833 13 N -0.723 5.723 14 C 0.700 3.300 15 O -0.640 6.640 16 N -0.611 5.611 17 C 0.125 3.875 18 C -0.091 4.091 19 S -0.301 6.301 20 C -0.007 4.007 21 C -0.129 4.129 22 C -0.149 4.149 23 C -0.139 4.139 24 C 0.097 3.903 25 H 0.035 0.965 26 H 0.064 0.936 27 H 0.018 0.982 28 H 0.013 0.987 29 H 0.064 0.936 30 H 0.033 0.967 31 H 0.261 0.739 32 H 0.030 0.970 33 H 0.035 0.965 34 H 0.404 0.596 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.128 0.872 39 H 0.090 0.910 40 H 0.042 0.958 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.106 0.894 46 H 0.046 0.954 47 H 0.115 0.885 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.525 8.440 20.627 22.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.053 3.947 3 C -0.174 4.174 4 C -0.569 4.569 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.536 5.536 8 Si 0.770 3.230 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.205 1.205 12 C 0.042 3.958 13 N -0.380 5.380 14 C 0.402 3.598 15 O -0.522 6.522 16 N -0.347 5.347 17 C -0.001 4.001 18 C -0.240 4.240 19 S -0.073 6.073 20 C -0.116 4.116 21 C -0.187 4.187 22 C -0.207 4.207 23 C -0.179 4.179 24 C -0.026 4.026 25 H 0.053 0.947 26 H 0.083 0.917 27 H 0.037 0.963 28 H 0.033 0.967 29 H 0.083 0.917 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.242 0.758 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.133 0.867 38 H 0.146 0.854 39 H 0.109 0.891 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.106 0.894 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.124 0.876 46 H 0.065 0.935 47 H 0.133 0.867 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.961 7.936 20.675 22.497 hybrid contribution -0.633 -0.537 -1.391 1.620 sum -4.594 7.399 19.284 21.159 Atomic orbital electron populations 1.21633 0.96878 0.98644 1.00279 1.18344 0.93394 0.92957 0.90041 1.21629 0.97667 0.97873 1.00215 1.21228 1.31847 1.12231 0.91596 0.93915 1.25407 0.95092 0.95576 1.00793 1.69883 1.36887 1.23141 1.23671 0.85843 0.78563 0.78875 0.79676 1.20260 1.20653 1.20464 1.21124 0.96529 0.94665 0.83458 1.45286 1.55752 1.33118 1.03800 1.16084 0.80245 0.82112 0.81396 1.90831 1.40894 1.34125 1.86336 1.46489 1.52433 1.30978 1.04777 1.21484 1.02378 0.95339 0.80853 1.23880 1.02776 0.97147 1.00155 1.87052 1.20977 1.25721 1.73536 1.21329 0.97163 0.95901 0.97249 1.21755 1.00242 0.94147 1.02543 1.22322 0.96035 1.03055 0.99313 1.21241 1.00514 0.99040 0.97098 1.21766 0.92680 0.83227 1.04940 0.94651 0.91737 0.96327 0.96739 0.91684 0.94763 0.92976 0.95175 0.94693 0.75816 0.89678 0.91796 0.86663 0.85395 0.89086 0.93832 0.91201 0.89353 0.91217 0.90996 0.87590 0.93526 0.86676 0.89985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.15 8.08 71.98 0.58 -4.57 16 2 C 0.05 2.50 0.50 -52.93 -0.03 2.48 16 3 C -0.12 -5.22 8.08 71.98 0.58 -4.64 16 4 C -0.53 -28.44 8.01 25.60 0.21 -28.23 16 5 H 0.04 2.35 7.74 -2.91 -0.02 2.33 16 6 C 0.03 1.65 5.15 84.66 0.44 2.09 16 7 N -0.90 -47.57 9.35 21.45 0.20 -47.37 16 8 Si 0.94 42.83 29.54 68.60 2.03 44.85 16 9 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 12 C 0.17 7.46 4.51 86.38 0.39 7.85 16 13 N -0.72 -26.53 4.81 -478.54 -2.30 -28.84 16 14 C 0.70 25.91 7.91 179.05 1.42 27.32 16 15 O -0.64 -29.50 15.68 -3.98 -0.06 -29.56 16 16 N -0.61 -16.06 2.40 -841.05 -2.02 -18.09 16 17 C 0.13 2.78 6.02 86.68 0.52 3.31 16 18 C -0.09 -1.47 5.72 72.26 0.41 -1.06 16 19 S -0.30 -6.69 20.54 -56.49 -1.16 -7.85 16 20 C -0.01 -0.12 0.76 -13.00 -0.01 -0.13 16 21 C -0.13 -2.04 8.27 71.98 0.60 -1.44 16 22 C -0.15 -1.50 7.42 71.98 0.53 -0.97 16 23 C -0.14 -2.59 3.95 28.73 0.11 -2.48 16 24 C 0.10 1.80 4.88 87.06 0.42 2.23 16 25 H 0.03 1.29 6.86 -2.39 -0.02 1.28 16 26 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 27 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 28 H 0.01 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 3.21 6.07 -2.39 -0.01 3.20 16 30 H 0.03 1.29 6.86 -2.39 -0.02 1.27 16 31 H 0.26 13.33 8.31 -92.71 -0.77 12.56 16 32 H 0.03 1.46 8.14 -2.39 -0.02 1.45 16 33 H 0.03 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.40 12.87 3.91 -92.71 -0.36 12.51 16 35 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.06 1.86 6.92 -2.39 -0.02 1.85 16 37 H 0.12 1.24 5.42 -2.47 -0.01 1.23 16 38 H 0.13 1.74 8.14 -2.48 -0.02 1.72 16 39 H 0.09 1.07 8.11 -2.39 -0.02 1.05 16 40 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.60 3.94 -2.38 -0.01 0.59 16 44 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.11 1.52 8.04 -2.39 -0.02 1.50 16 46 H 0.05 1.23 7.81 -2.39 -0.02 1.21 16 47 H 0.12 1.42 5.29 -2.38 -0.01 1.40 16 48 H 0.08 1.53 6.65 -2.39 -0.02 1.51 16 Total: -1.00 -66.47 362.33 3.44 -63.02 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.58 Total: 22.07 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.18 Total: 1.75 kcal Atomic # 7 Polarization: -90.16 SS G_CDS: -4.12 Total: -94.29 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.06 Total: -29.56 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 16 Polarization: -6.69 SS G_CDS: -1.16 Total: -7.85 kcal Total: -66.47 3.44 -63.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590452.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.650 kcal (2) G-P(sol) polarization free energy of solvation -66.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds