Wall clock time and date at job start Tue Mar 31 2020 10:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31694 * 119.71601 * 2 1 4 4 C 1.31928 * 121.87567 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.45457 * 180.02562 * 4 3 2 6 6 C 1.53005 * 117.49556 * 163.72204 * 5 4 3 7 7 C 1.53001 * 117.49714 * 95.06836 * 5 4 3 8 8 C 1.38347 * 121.08318 * 359.97438 * 4 3 2 9 9 C 1.38351 * 119.30075 * 0.02562 * 8 4 3 10 10 C 1.39519 * 119.71406 * 179.97438 * 2 1 3 11 11 C 1.47840 * 120.56020 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99656 * 48.31479 * 11 10 2 13 13 N 1.34774 * 120.00212 * 228.30843 * 11 10 2 14 14 C 1.46935 * 120.63018 * 5.49094 * 13 11 10 15 15 C 1.53621 * 108.53980 * 126.36579 * 14 13 11 16 16 C 1.53040 * 109.24378 * 54.85909 * 15 14 13 17 17 C 1.50695 * 109.45126 * 178.49104 * 16 15 14 18 18 H 1.08003 * 119.99879 * 120.06147 * 17 16 15 19 19 C 1.37874 * 120.00460 * 300.06315 * 17 16 15 20 20 N 1.31519 * 120.00091 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99749 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46741 * 90.00036 * 21 19 17 23 23 H 1.48500 * 109.47058 * 209.99745 * 21 19 17 24 24 H 1.48495 * 109.47211 * 330.00178 * 21 19 17 25 25 C 1.53041 * 109.53617 * 298.50736 * 16 15 14 26 26 C 1.46926 * 120.63064 * 185.76842 * 13 11 10 27 27 H 1.08999 * 109.46548 * 95.43451 * 1 2 3 28 28 H 1.08993 * 109.47092 * 215.43307 * 1 2 3 29 29 H 1.09001 * 109.47045 * 335.44109 * 1 2 3 30 30 H 1.08995 * 115.55451 * 309.39422 * 5 4 3 31 31 H 1.09000 * 117.49994 * 0.02562 * 6 5 4 32 32 H 1.09005 * 117.49342 * 145.02092 * 6 5 4 33 33 H 1.08999 * 117.50010 * 214.97409 * 7 5 4 34 34 H 1.08995 * 117.50039 * 359.97438 * 7 5 4 35 35 H 1.07997 * 120.34600 * 179.72414 * 8 4 3 36 36 H 1.08008 * 120.85303 * 179.97438 * 9 8 4 37 37 H 1.08992 * 109.58583 * 246.20190 * 14 13 11 38 38 H 1.09004 * 109.58245 * 6.62547 * 14 13 11 39 39 H 1.08999 * 109.64016 * 294.86615 * 15 14 13 40 40 H 1.09003 * 109.43248 * 174.72381 * 15 14 13 41 41 H 1.09006 * 109.46279 * 58.52597 * 16 15 14 42 42 H 0.97002 * 119.99380 * 180.02562 * 20 19 17 43 43 H 1.08991 * 109.50171 * 301.41151 * 25 16 15 44 44 H 1.09010 * 109.52156 * 181.32875 * 25 16 15 45 45 H 1.09000 * 109.58724 * 353.38018 * 26 13 11 46 46 H 1.09007 * 109.58301 * 113.65894 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 0.0005 5 6 4.1693 2.5327 0.0011 6 6 5.6509 2.5629 0.3820 7 6 4.5993 3.1052 1.3532 8 6 4.2366 0.0364 0.0016 9 6 3.5987 -1.1913 0.0016 10 6 2.1986 -1.2117 0.0005 11 6 1.4656 -2.4956 0.0005 12 8 0.5566 -2.6764 -0.7860 13 7 1.8052 -3.4656 0.8725 14 6 2.8191 -3.2205 1.9073 15 6 2.2183 -3.5801 3.2747 16 6 1.6971 -5.0184 3.2341 17 6 1.1401 -5.3886 4.5845 18 1 0.1037 -5.6772 4.6805 19 6 1.9533 -5.3589 5.6975 20 7 1.4669 -5.6815 6.8761 21 14 3.7459 -4.8604 5.5314 22 1 3.8694 -3.3911 5.7084 23 1 4.5506 -5.5534 6.5693 24 1 4.2425 -5.2402 4.1844 25 6 0.5948 -5.1337 2.1787 26 6 1.1731 -4.7900 0.8024 27 1 -0.3632 -0.0973 -1.0231 28 1 -0.3633 -0.8373 0.5958 29 1 -0.3633 0.9347 0.4271 30 1 3.8306 3.2369 -0.7588 31 1 6.1258 1.6141 0.6318 32 1 6.2867 3.2873 -0.1271 33 1 4.5438 4.1860 1.4828 34 1 4.3820 2.5134 2.2424 35 1 5.3152 0.0910 -0.0025 36 1 4.1661 -2.1103 0.0020 37 1 3.6946 -3.8407 1.7152 38 1 3.1046 -2.1685 1.8972 39 1 1.3964 -2.9017 3.5035 40 1 2.9869 -3.4932 4.0427 41 1 2.5144 -5.6939 2.9808 42 1 2.0390 -5.6602 7.6591 43 1 -0.2118 -4.4408 2.4178 44 1 0.2074 -6.1526 2.1664 45 1 0.3723 -4.7741 0.0631 46 1 1.9166 -5.5353 0.5196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336202921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:50 Heat of formation + Delta-G solvation = 25.798465 kcal Electronic energy + Delta-G solvation = -26537.865248 eV Core-core repulsion = 23007.094373 eV Total energy + Delta-G solvation = -3530.770874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.07761 -39.52101 -37.45820 -36.94106 -33.87697 -33.00344 -32.44810 -31.40260 -30.53679 -27.95050 -26.68551 -25.29473 -23.21241 -23.00715 -22.70663 -22.10781 -21.12489 -20.15033 -18.87568 -17.36075 -17.10717 -16.76331 -16.35837 -15.94701 -15.41803 -14.92084 -14.53187 -14.47770 -14.26693 -14.03184 -13.54283 -13.39862 -13.18536 -12.90190 -12.68500 -12.57276 -12.51808 -12.15438 -12.10930 -12.06942 -11.90552 -11.73813 -11.10445 -10.94378 -10.81189 -10.80118 -10.28243 -10.25260 -10.02709 -9.86072 -9.78673 -9.49797 -9.36208 -9.14218 -8.90738 -8.61881 -8.28332 -6.14286 -4.13741 0.61519 1.03659 2.71428 3.09939 3.16909 3.25975 3.31327 3.31848 3.61819 3.87606 4.31779 4.40005 4.45223 4.52507 4.57187 4.66266 4.79042 4.91068 5.10744 5.20632 5.27592 5.29942 5.39471 5.45131 5.52932 5.53861 5.58409 5.66211 5.71782 5.74020 5.76224 5.77361 5.85105 5.91051 6.00456 6.03797 6.11020 6.22742 6.43800 6.54641 6.57941 6.68928 6.82462 7.11479 7.41436 7.55731 7.68022 7.79394 8.23642 8.45115 8.90320 9.47445 10.99141 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004215 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.987065 B = 6642.049200 C = 7936.514130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.185 3.815 3 N -0.482 5.482 4 C 0.179 3.821 5 C -0.110 4.110 6 C -0.173 4.173 7 C -0.160 4.160 8 C -0.184 4.184 9 C -0.037 4.037 10 C -0.180 4.180 11 C 0.564 3.436 12 O -0.539 6.539 13 N -0.593 5.593 14 C 0.097 3.903 15 C -0.134 4.134 16 C 0.015 3.985 17 C -0.514 4.514 18 H 0.074 0.926 19 C 0.069 3.931 20 N -0.899 5.899 21 Si 0.884 3.116 22 H -0.279 1.279 23 H -0.296 1.296 24 H -0.265 1.265 25 C -0.113 4.113 26 C 0.109 3.891 27 H 0.087 0.913 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.123 0.877 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.141 0.859 36 H 0.141 0.859 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.028 0.972 42 H 0.264 0.736 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.160 13.933 -14.226 21.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.046 3.954 3 N -0.191 5.191 4 C 0.041 3.959 5 C -0.129 4.129 6 C -0.210 4.210 7 C -0.197 4.197 8 C -0.204 4.204 9 C -0.063 4.063 10 C -0.185 4.185 11 C 0.351 3.649 12 O -0.417 6.417 13 N -0.325 5.325 14 C -0.026 4.026 15 C -0.172 4.172 16 C -0.004 4.004 17 C -0.551 4.551 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.538 5.538 21 Si 0.715 3.285 22 H -0.206 1.206 23 H -0.224 1.224 24 H -0.190 1.190 25 C -0.151 4.151 26 C -0.013 4.013 27 H 0.106 0.894 28 H 0.098 0.902 29 H 0.096 0.904 30 H 0.141 0.859 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.115 0.885 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.084 0.916 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.223 14.546 -14.438 21.730 hybrid contribution 1.663 -0.525 0.262 1.763 sum 8.886 14.021 -14.176 21.829 Atomic orbital electron populations 1.20780 0.87795 1.03505 1.03969 1.21343 0.97225 0.86310 0.90509 1.67290 1.09145 1.28671 1.13967 1.20469 0.89095 0.93679 0.92674 1.20795 0.96280 0.94877 1.00956 1.23124 0.90896 1.03538 1.03475 1.22994 1.02260 1.01365 0.93109 1.21838 1.01645 0.92244 1.04663 1.21759 0.92964 0.98851 0.92741 1.20805 0.94673 0.95208 1.07821 1.18025 0.82974 0.82971 0.80926 1.90754 1.29905 1.80700 1.40351 1.48077 1.40697 1.12821 1.30913 1.22190 0.90526 1.00813 0.89029 1.22460 1.00308 1.01460 0.92975 1.19134 0.94482 0.91176 0.95601 1.21039 0.98784 1.45555 0.89763 0.90766 1.25042 0.98221 0.94749 0.95254 1.69898 1.36259 1.48669 0.98924 0.86890 0.85798 0.78106 0.77734 1.20584 1.22370 1.19005 1.21824 0.99297 1.01411 0.92564 1.21833 0.97696 0.81888 0.99866 0.89405 0.90230 0.90422 0.85915 0.88153 0.87940 0.88010 0.88471 0.84121 0.84080 0.91578 0.90713 0.91564 0.92380 0.95362 0.92617 0.92172 0.91160 0.89585 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 9.01 36.01 0.32 -1.06 16 2 C 0.18 2.69 6.82 -82.17 -0.56 2.13 16 3 N -0.48 -6.72 10.17 -5.42 -0.06 -6.77 16 4 C 0.18 2.11 6.46 -82.51 -0.53 1.58 16 5 C -0.11 -1.00 6.21 -91.77 -0.57 -1.57 16 6 C -0.17 -1.17 9.79 -26.69 -0.26 -1.43 16 7 C -0.16 -1.27 10.24 -26.69 -0.27 -1.54 16 8 C -0.18 -1.97 9.34 -39.50 -0.37 -2.34 16 9 C -0.04 -0.45 7.69 -38.87 -0.30 -0.75 16 10 C -0.18 -2.63 4.84 -104.82 -0.51 -3.13 16 11 C 0.56 9.29 6.37 -12.33 -0.08 9.21 16 12 O -0.54 -10.02 15.18 5.32 0.08 -9.94 16 13 N -0.59 -9.69 2.97 -173.61 -0.51 -10.21 16 14 C 0.10 1.55 5.33 -3.48 -0.02 1.54 16 15 C -0.13 -2.68 4.86 -26.39 -0.13 -2.81 16 16 C 0.01 0.33 1.65 -91.73 -0.15 0.18 16 17 C -0.51 -13.83 9.14 -34.44 -0.31 -14.14 16 18 H 0.07 2.19 7.99 -52.48 -0.42 1.77 16 19 C 0.07 1.92 5.45 -17.82 -0.10 1.82 16 20 N -0.90 -26.91 13.96 55.43 0.77 -26.14 16 21 Si 0.88 20.81 24.38 -169.99 -4.14 16.67 16 22 H -0.28 -6.36 6.86 56.52 0.39 -5.97 16 23 H -0.30 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.27 -5.81 6.53 56.52 0.37 -5.44 16 25 C -0.11 -2.13 5.30 -26.61 -0.14 -2.27 16 26 C 0.11 1.78 6.44 -3.71 -0.02 1.75 16 27 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.08 1.15 7.05 -51.93 -0.37 0.78 16 29 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.10 0.64 6.38 -51.93 -0.33 0.31 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.14 1.11 6.23 -52.49 -0.33 0.78 16 36 H 0.14 1.46 7.38 -52.48 -0.39 1.07 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 1.09 5.12 -51.93 -0.27 0.82 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.06 1.23 3.24 -51.93 -0.17 1.06 16 41 H 0.03 0.63 7.20 -51.93 -0.37 0.25 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 44 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 45 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 46 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -31.38 357.54 -9.31 -40.69 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -6.83 Total: 3.15 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -4.00 Total: -12.84 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.20 Total: -43.12 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.08 Total: -9.94 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.14 Total: 16.67 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.38 -9.31 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.488 kcal (2) G-P(sol) polarization free energy of solvation -31.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.690 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds