Wall clock time and date at job start Tue Mar 31 2020 10:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31694 * 119.71601 * 2 1 4 4 C 1.31928 * 121.87567 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.45457 * 180.02562 * 4 3 2 6 6 C 1.53005 * 117.49556 * 163.72204 * 5 4 3 7 7 C 1.53001 * 117.49714 * 95.06836 * 5 4 3 8 8 C 1.38347 * 121.08318 * 359.97438 * 4 3 2 9 9 C 1.38351 * 119.30075 * 0.02562 * 8 4 3 10 10 C 1.39519 * 119.71406 * 179.97438 * 2 1 3 11 11 C 1.47840 * 120.56020 * 0.02562 * 10 2 1 12 12 O 1.21555 * 119.99656 * 48.31479 * 11 10 2 13 13 N 1.34774 * 120.00212 * 228.30843 * 11 10 2 14 14 C 1.46935 * 120.63018 * 5.49094 * 13 11 10 15 15 C 1.53621 * 108.53980 * 126.36579 * 14 13 11 16 16 C 1.53040 * 109.24378 * 54.85909 * 15 14 13 17 17 C 1.50695 * 109.45126 * 178.49104 * 16 15 14 18 18 H 1.08003 * 119.99879 * 120.06147 * 17 16 15 19 19 C 1.37874 * 120.00460 * 300.06315 * 17 16 15 20 20 N 1.31519 * 120.00091 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99749 * 359.97438 * 19 17 16 22 22 H 1.48503 * 109.46741 * 90.00036 * 21 19 17 23 23 H 1.48500 * 109.47058 * 209.99745 * 21 19 17 24 24 H 1.48495 * 109.47211 * 330.00178 * 21 19 17 25 25 C 1.53041 * 109.53617 * 298.50736 * 16 15 14 26 26 C 1.46926 * 120.63064 * 185.76842 * 13 11 10 27 27 H 1.08999 * 109.46548 * 95.43451 * 1 2 3 28 28 H 1.08993 * 109.47092 * 215.43307 * 1 2 3 29 29 H 1.09001 * 109.47045 * 335.44109 * 1 2 3 30 30 H 1.08995 * 115.55451 * 309.39422 * 5 4 3 31 31 H 1.09000 * 117.49994 * 0.02562 * 6 5 4 32 32 H 1.09005 * 117.49342 * 145.02092 * 6 5 4 33 33 H 1.08999 * 117.50010 * 214.97409 * 7 5 4 34 34 H 1.08995 * 117.50039 * 359.97438 * 7 5 4 35 35 H 1.07997 * 120.34600 * 179.72414 * 8 4 3 36 36 H 1.08008 * 120.85303 * 179.97438 * 9 8 4 37 37 H 1.08992 * 109.58583 * 246.20190 * 14 13 11 38 38 H 1.09004 * 109.58245 * 6.62547 * 14 13 11 39 39 H 1.08999 * 109.64016 * 294.86615 * 15 14 13 40 40 H 1.09003 * 109.43248 * 174.72381 * 15 14 13 41 41 H 1.09006 * 109.46279 * 58.52597 * 16 15 14 42 42 H 0.97002 * 119.99380 * 180.02562 * 20 19 17 43 43 H 1.08991 * 109.50171 * 301.41151 * 25 16 15 44 44 H 1.09010 * 109.52156 * 181.32875 * 25 16 15 45 45 H 1.09000 * 109.58724 * 353.38018 * 26 13 11 46 46 H 1.09007 * 109.58301 * 113.65894 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1599 1.1437 0.0000 4 6 3.4782 1.1935 0.0005 5 6 4.1693 2.5327 0.0011 6 6 5.6509 2.5629 0.3820 7 6 4.5993 3.1052 1.3532 8 6 4.2366 0.0364 0.0016 9 6 3.5987 -1.1913 0.0016 10 6 2.1986 -1.2117 0.0005 11 6 1.4656 -2.4956 0.0005 12 8 0.5566 -2.6764 -0.7860 13 7 1.8052 -3.4656 0.8725 14 6 2.8191 -3.2205 1.9073 15 6 2.2183 -3.5801 3.2747 16 6 1.6971 -5.0184 3.2341 17 6 1.1401 -5.3886 4.5845 18 1 0.1037 -5.6772 4.6805 19 6 1.9533 -5.3589 5.6975 20 7 1.4669 -5.6815 6.8761 21 14 3.7459 -4.8604 5.5314 22 1 3.8694 -3.3911 5.7084 23 1 4.5506 -5.5534 6.5693 24 1 4.2425 -5.2402 4.1844 25 6 0.5948 -5.1337 2.1787 26 6 1.1731 -4.7900 0.8024 27 1 -0.3632 -0.0973 -1.0231 28 1 -0.3633 -0.8373 0.5958 29 1 -0.3633 0.9347 0.4271 30 1 3.8306 3.2369 -0.7588 31 1 6.1258 1.6141 0.6318 32 1 6.2867 3.2873 -0.1271 33 1 4.5438 4.1860 1.4828 34 1 4.3820 2.5134 2.2424 35 1 5.3152 0.0910 -0.0025 36 1 4.1661 -2.1103 0.0020 37 1 3.6946 -3.8407 1.7152 38 1 3.1046 -2.1685 1.8972 39 1 1.3964 -2.9017 3.5035 40 1 2.9869 -3.4932 4.0427 41 1 2.5144 -5.6939 2.9808 42 1 2.0390 -5.6602 7.6591 43 1 -0.2118 -4.4408 2.4178 44 1 0.2074 -6.1526 2.1664 45 1 0.3723 -4.7741 0.0631 46 1 1.9166 -5.5353 0.5196 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336202921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:50 Heat of formation + Delta-G solvation = 7.172708 kcal Electronic energy + Delta-G solvation = -26538.672921 eV Core-core repulsion = 23007.094373 eV Total energy + Delta-G solvation = -3531.578548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.11843 -40.67856 -38.68129 -37.87338 -35.46897 -34.23064 -33.54879 -33.05436 -31.91739 -29.05774 -28.21115 -26.39469 -24.46184 -24.39669 -23.71456 -22.89043 -22.23541 -21.35620 -20.23428 -18.90702 -18.45135 -18.01760 -17.30837 -17.15003 -16.67230 -16.22294 -15.78051 -15.47369 -15.32651 -15.15400 -15.06611 -14.85873 -14.43164 -14.35308 -14.04124 -13.76485 -13.64278 -13.60063 -13.41225 -13.20835 -12.83362 -12.74368 -12.32854 -12.30628 -12.12906 -11.88350 -11.63225 -11.52016 -11.38666 -11.25343 -11.10334 -11.04584 -10.80680 -10.64664 -10.48307 -9.86929 -9.63032 -8.28637 -6.33877 -0.35165 0.12376 1.30767 1.37507 1.47598 1.52075 1.90906 2.34039 2.51135 2.77817 3.06206 3.12485 3.34104 3.56654 3.66645 3.91123 3.92650 3.95333 4.04425 4.11448 4.14585 4.18877 4.24665 4.39961 4.43226 4.50165 4.52188 4.55793 4.60925 4.67714 4.77481 4.79323 4.85831 4.92218 4.97355 4.99066 5.03493 5.07300 5.09598 5.21674 5.26740 5.35544 5.51563 5.55101 5.66387 5.71893 6.28790 6.31235 6.73487 6.85099 6.98152 7.31649 8.88594 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013543 B = 0.004215 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.987065 B = 6642.049200 C = 7936.514130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.167 3.833 3 N -0.502 5.502 4 C 0.172 3.828 5 C -0.129 4.129 6 C -0.150 4.150 7 C -0.165 4.165 8 C -0.175 4.175 9 C -0.035 4.035 10 C -0.202 4.202 11 C 0.567 3.433 12 O -0.567 6.567 13 N -0.596 5.596 14 C 0.106 3.894 15 C -0.132 4.132 16 C 0.016 3.984 17 C -0.522 4.522 18 H 0.026 0.974 19 C 0.005 3.995 20 N -0.955 5.955 21 Si 0.950 3.050 22 H -0.265 1.265 23 H -0.302 1.302 24 H -0.229 1.229 25 C -0.107 4.107 26 C 0.117 3.883 27 H 0.086 0.914 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.177 0.823 36 H 0.165 0.835 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.054 0.946 41 H 0.039 0.961 42 H 0.265 0.735 43 H 0.038 0.962 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.306 15.398 -16.179 25.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.029 3.971 3 N -0.212 5.212 4 C 0.035 3.965 5 C -0.148 4.148 6 C -0.187 4.187 7 C -0.203 4.203 8 C -0.194 4.194 9 C -0.060 4.060 10 C -0.207 4.207 11 C 0.355 3.645 12 O -0.447 6.447 13 N -0.327 5.327 14 C -0.016 4.016 15 C -0.170 4.170 16 C -0.003 4.003 17 C -0.560 4.560 18 H 0.044 0.956 19 C -0.191 4.191 20 N -0.595 5.595 21 Si 0.775 3.225 22 H -0.191 1.191 23 H -0.230 1.230 24 H -0.152 1.152 25 C -0.145 4.145 26 C -0.005 4.005 27 H 0.105 0.895 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.143 0.857 31 H 0.129 0.871 32 H 0.141 0.859 33 H 0.131 0.869 34 H 0.103 0.897 35 H 0.194 0.806 36 H 0.183 0.817 37 H 0.114 0.886 38 H 0.112 0.888 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.088 0.912 45 H 0.104 0.896 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.363 16.019 -16.420 25.600 hybrid contribution 0.248 -0.946 0.906 1.333 sum 11.611 15.072 -15.514 24.550 Atomic orbital electron populations 1.20702 0.88116 1.03166 1.03623 1.21418 0.97468 0.86853 0.91404 1.67314 1.10593 1.28395 1.14862 1.21048 0.88597 0.95561 0.91339 1.20872 0.98196 0.93864 1.01842 1.23271 0.89592 1.04270 1.01586 1.23049 1.03063 1.01966 0.92214 1.22214 1.03290 0.91122 1.02769 1.22057 0.91802 1.00442 0.91742 1.20715 0.95931 0.93884 1.10145 1.18311 0.82477 0.83379 0.80301 1.90733 1.31204 1.81236 1.41563 1.48109 1.40836 1.12730 1.31027 1.22185 0.90662 1.02688 0.86103 1.22306 0.99709 0.99320 0.95706 1.19092 0.95324 0.92688 0.93210 1.21388 0.96904 1.44904 0.92779 0.95603 1.26022 1.03806 0.94734 0.94532 1.70082 1.38424 1.50899 1.00094 0.85832 0.79040 0.78339 0.79260 1.19074 1.23039 1.15166 1.21707 0.98054 1.00982 0.93800 1.21730 0.98453 0.82760 0.97532 0.89514 0.91959 0.89545 0.85713 0.87147 0.85937 0.86858 0.89715 0.80595 0.81732 0.88627 0.88767 0.93551 0.92821 0.94307 0.92664 0.94326 0.91222 0.89615 0.89188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.70 9.01 71.24 0.64 -2.06 16 2 C 0.17 4.74 6.82 42.89 0.29 5.03 16 3 N -0.50 -13.40 10.17 -171.05 -1.74 -15.14 16 4 C 0.17 3.62 6.46 42.57 0.28 3.90 16 5 C -0.13 -1.96 6.21 -11.54 -0.07 -2.03 16 6 C -0.15 -1.38 9.79 30.62 0.30 -1.08 16 7 C -0.17 -2.15 10.24 30.62 0.31 -1.84 16 8 C -0.17 -3.02 9.34 22.32 0.21 -2.81 16 9 C -0.03 -0.71 7.69 22.73 0.17 -0.53 16 10 C -0.20 -5.51 4.84 -19.99 -0.10 -5.60 16 11 C 0.57 17.90 6.37 86.79 0.55 18.45 16 12 O -0.57 -20.93 15.18 -3.89 -0.06 -20.99 16 13 N -0.60 -18.10 2.97 -821.46 -2.44 -20.54 16 14 C 0.11 2.99 5.33 86.51 0.46 3.45 16 15 C -0.13 -5.04 4.86 30.82 0.15 -4.89 16 16 C 0.02 0.67 1.65 -11.51 -0.02 0.65 16 17 C -0.52 -29.01 9.14 25.60 0.23 -28.78 16 18 H 0.03 1.62 7.99 -2.91 -0.02 1.60 16 19 C 0.01 0.31 5.45 84.65 0.46 0.77 16 20 N -0.95 -59.29 13.96 21.45 0.30 -58.99 16 21 Si 0.95 41.87 24.38 68.60 1.67 43.55 16 22 H -0.26 -11.02 6.86 99.48 0.68 -10.34 16 23 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 24 H -0.23 -8.70 6.53 99.48 0.65 -8.05 16 25 C -0.11 -4.06 5.30 30.67 0.16 -3.90 16 26 C 0.12 3.61 6.44 86.36 0.56 4.17 16 27 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 28 H 0.06 1.88 7.05 -2.39 -0.02 1.86 16 29 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.11 0.81 6.38 -2.39 -0.02 0.79 16 32 H 0.12 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.18 1.74 6.23 -2.91 -0.02 1.72 16 36 H 0.17 2.52 7.38 -2.91 -0.02 2.50 16 37 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 38 H 0.09 2.35 5.12 -2.38 -0.01 2.34 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.05 2.10 3.24 -2.39 -0.01 2.09 16 41 H 0.04 1.61 7.20 -2.38 -0.02 1.59 16 42 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 43 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.07 2.60 8.14 -2.38 -0.02 2.58 16 45 H 0.09 2.69 7.00 -2.39 -0.02 2.67 16 46 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 Total: -1.00 -72.02 357.54 3.24 -68.78 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.91 Total: 20.43 kcal Atomic # 6 Polarization: -21.70 SS G_CDS: 4.60 Total: -17.11 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -3.88 Total: -94.67 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.06 Total: -20.99 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.67 Total: 43.55 kcal Total: -72.02 3.24 -68.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336202921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.951 kcal (2) G-P(sol) polarization free energy of solvation -72.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds