Wall clock time and date at job start Tue Mar 31 2020 11:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 115.56397 * 2 1 4 4 C 1.38231 * 120.00308 * 145.41223 * 3 2 1 5 5 C 1.38237 * 119.99704 * 179.74722 * 4 3 2 6 6 C 1.38238 * 120.00135 * 0.55165 * 5 4 3 7 7 C 1.38235 * 119.99896 * 359.70311 * 6 5 4 8 8 C 1.38235 * 120.00154 * 0.02562 * 7 6 5 9 9 C 1.53076 * 117.51594 * 214.29465 * 2 1 3 10 10 C 1.52996 * 59.98497 * 252.52184 * 9 2 1 11 11 H 1.08994 * 117.49890 * 252.49704 * 10 9 2 12 12 C 1.50699 * 117.49599 * 107.50260 * 10 9 2 13 13 O 1.21287 * 119.99936 * 291.24863 * 12 10 9 14 14 N 1.34774 * 119.99948 * 111.25478 * 12 10 9 15 15 C 1.46966 * 120.58877 * 179.97438 * 14 12 10 16 16 C 1.53370 * 108.63152 * 235.19817 * 15 14 12 17 17 N 1.46958 * 108.63971 * 310.57945 * 16 15 14 18 18 C 1.36942 * 120.59619 * 235.25204 * 17 16 15 19 19 H 1.07996 * 120.00227 * 28.13419 * 18 17 16 20 20 C 1.38818 * 119.99719 * 208.14915 * 18 17 16 21 21 N 1.31620 * 120.00074 * 17.56274 * 20 18 17 22 22 Si 1.86804 * 119.99712 * 197.56727 * 20 18 17 23 23 H 1.48494 * 109.46993 * 89.99435 * 22 20 18 24 24 H 1.48494 * 109.46917 * 209.99535 * 22 20 18 25 25 H 1.48503 * 109.46905 * 329.99669 * 22 20 18 26 26 C 1.46966 * 118.81395 * 55.22510 * 17 16 15 27 27 C 1.46966 * 120.59804 * 359.97210 * 14 12 10 28 28 H 1.08997 * 109.47767 * 274.30804 * 1 2 3 29 29 H 1.09003 * 109.47290 * 34.31206 * 1 2 3 30 30 H 1.09009 * 109.47350 * 154.31007 * 1 2 3 31 31 H 1.07997 * 120.00097 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.99805 * 180.27627 * 5 4 3 33 33 H 1.07997 * 119.99864 * 179.73062 * 6 5 4 34 34 H 1.07997 * 119.99841 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.00151 * 179.97438 * 8 7 6 36 36 H 1.09004 * 117.49055 * 145.03107 * 9 2 1 37 37 H 1.09001 * 117.53108 * 359.97438 * 9 2 1 38 38 H 1.08991 * 109.61637 * 354.94715 * 15 14 12 39 39 H 1.09006 * 109.61003 * 115.46085 * 15 14 12 40 40 H 1.09006 * 109.60639 * 70.32658 * 16 15 14 41 41 H 1.09004 * 109.61104 * 190.83065 * 16 15 14 42 42 H 0.97005 * 119.99467 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.61591 * 185.03288 * 26 17 16 44 44 H 1.08999 * 109.74855 * 64.60230 * 26 17 16 45 45 H 1.09000 * 109.60778 * 244.54659 * 27 14 12 46 46 H 1.08997 * 109.60345 * 4.88012 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 3.3675 1.5578 0.6795 5 6 3.9667 2.8036 0.6751 6 6 3.3726 3.8539 0.0006 7 6 2.1825 3.6568 -0.6745 8 6 1.5863 2.4097 -0.6748 9 6 2.2371 -1.1216 -0.7649 10 6 2.2364 -1.1209 0.7650 11 1 3.1713 -0.8750 1.2686 12 6 1.3720 -2.1406 1.4608 13 8 0.1638 -2.0524 1.4025 14 7 1.9416 -3.1505 2.1479 15 6 1.1111 -4.1517 2.8318 16 6 1.5203 -4.2015 4.3090 17 7 2.9829 -4.3215 4.3874 18 6 3.5616 -5.3482 5.0848 19 1 3.0415 -6.2886 5.1924 20 6 4.8167 -5.1801 5.6536 21 7 5.3021 -3.9696 5.8310 22 14 5.8167 -6.6720 6.1673 23 1 6.6644 -7.1147 5.0313 24 1 6.6813 -6.3151 7.3206 25 1 4.8991 -7.7722 6.5583 26 6 3.8135 -3.3203 3.7036 27 6 3.4043 -3.2703 2.2267 28 1 -0.3634 0.0772 1.0247 29 1 -0.3634 0.8488 -0.5793 30 1 -0.3634 -0.9261 -0.4455 31 1 3.8294 0.7383 1.2102 32 1 4.8966 2.9574 1.2023 33 1 3.8384 4.8282 0.0009 34 1 1.7182 4.4775 -1.2011 35 1 0.6563 2.2559 -1.2019 36 1 3.1724 -0.8756 -1.2680 37 1 1.6127 -1.8599 -1.2680 38 1 0.0607 -3.8718 2.7524 39 1 1.2671 -5.1295 2.3759 40 1 1.2011 -3.2865 4.8081 41 1 1.0563 -5.0635 4.7884 42 1 6.1793 -3.8523 6.2281 43 1 4.8639 -3.6003 3.7829 44 1 3.6603 -2.3418 4.1587 45 1 3.7238 -4.1851 1.7276 46 1 3.8682 -2.4096 1.7450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336226420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:35 Heat of formation + Delta-G solvation = 50.809348 kcal Electronic energy + Delta-G solvation = -26339.444952 eV Core-core repulsion = 22809.758631 eV Total energy + Delta-G solvation = -3529.686321 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.55417 -39.16292 -37.35613 -36.14450 -33.87182 -31.58589 -31.15902 -30.66090 -30.16878 -28.41762 -27.01219 -24.60499 -23.38915 -23.19025 -22.65217 -22.27911 -20.41529 -19.53838 -18.29509 -17.70938 -16.82963 -16.01077 -15.56447 -15.29872 -14.95242 -14.71998 -14.61977 -14.17382 -13.75154 -13.70574 -13.58715 -13.44112 -13.29504 -13.11046 -12.82902 -12.41136 -12.26013 -12.19207 -11.91205 -11.65474 -11.33433 -11.21223 -11.02417 -10.85969 -10.75820 -10.50843 -10.34177 -10.23723 -10.14287 -9.92171 -9.85597 -9.22159 -9.02125 -8.63382 -8.60299 -8.23352 -6.74111 -5.88235 -3.32502 1.21437 1.30180 2.79265 3.32458 3.36115 3.40275 3.41510 3.57554 3.99975 4.40580 4.45499 4.57628 4.76300 4.80439 4.89084 4.98493 5.04107 5.16939 5.27797 5.34957 5.36352 5.44314 5.58832 5.74923 5.79411 5.83381 5.84830 5.88832 5.93798 5.99042 6.02561 6.11785 6.13482 6.19679 6.33578 6.35288 6.41926 6.42998 6.51008 6.59652 6.76842 6.89499 6.92052 7.19507 7.43103 7.69991 7.92731 8.33123 8.58897 9.09417 9.71987 10.29026 11.19446 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.003305 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.112255 B = 8470.241632 C = 9553.453698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.059 4.059 3 C -0.041 4.041 4 C -0.118 4.118 5 C -0.116 4.116 6 C -0.128 4.128 7 C -0.120 4.120 8 C -0.112 4.112 9 C -0.135 4.135 10 C -0.178 4.178 11 H 0.127 0.873 12 C 0.540 3.460 13 O -0.553 6.553 14 N -0.592 5.592 15 C 0.096 3.904 16 C 0.132 3.868 17 N -0.591 5.591 18 C -0.255 4.255 19 H 0.068 0.932 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.157 3.843 27 C 0.080 3.920 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.120 0.880 35 H 0.124 0.876 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.023 0.977 41 H 0.066 0.934 42 H 0.255 0.745 43 H 0.100 0.900 44 H 0.023 0.977 45 H 0.063 0.937 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.884 11.576 -14.236 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.059 4.059 3 C -0.041 4.041 4 C -0.136 4.136 5 C -0.134 4.134 6 C -0.146 4.146 7 C -0.138 4.138 8 C -0.130 4.130 9 C -0.173 4.173 10 C -0.199 4.199 11 H 0.145 0.855 12 C 0.328 3.672 13 O -0.433 6.433 14 N -0.323 5.323 15 C -0.028 4.028 16 C 0.005 3.995 17 N -0.314 5.314 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.734 3.266 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.030 3.970 27 C -0.044 4.044 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.086 0.914 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.041 0.959 41 H 0.085 0.915 42 H 0.065 0.935 43 H 0.118 0.882 44 H 0.041 0.959 45 H 0.082 0.918 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.355 11.623 -14.137 18.813 hybrid contribution 0.905 -0.731 0.499 1.266 sum -3.450 10.892 -13.638 17.791 Atomic orbital electron populations 1.21346 0.89935 1.01294 1.02928 1.20185 0.95675 0.87043 1.03041 1.19074 0.94580 0.93244 0.97208 1.21149 0.95507 0.97722 0.99206 1.21156 0.99989 0.92952 0.99264 1.21145 0.96145 0.98920 0.98366 1.21113 0.95961 0.96990 0.99750 1.20993 1.00079 0.92404 0.99550 1.23171 1.02623 1.00109 0.91388 1.22469 1.02010 0.99845 0.95568 0.85537 1.19497 0.87727 0.81259 0.78715 1.90633 1.14477 1.75275 1.62927 1.47999 1.08034 1.26339 1.49947 1.22200 0.94954 0.90537 0.95082 1.21301 0.86744 0.99359 0.92136 1.43985 0.99006 1.30117 1.58294 1.19224 1.00924 0.91168 1.27165 0.91430 1.25069 0.99972 0.96311 0.98203 1.70023 1.18506 1.19658 1.46424 0.86254 0.80165 0.82345 0.77799 1.21350 1.21723 1.20382 1.21171 0.97997 0.92042 0.85778 1.22688 0.78703 1.00968 1.02011 0.91135 0.93312 0.91352 0.85755 0.85934 0.86266 0.86158 0.85782 0.87867 0.87928 0.89988 0.92007 0.95889 0.91544 0.93492 0.88200 0.95929 0.91843 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 7.97 37.15 0.30 -0.99 16 2 C -0.06 -0.75 2.55 -155.62 -0.40 -1.14 16 3 C -0.04 -0.49 5.45 -104.62 -0.57 -1.06 16 4 C -0.12 -1.38 9.39 -39.58 -0.37 -1.76 16 5 C -0.12 -1.21 10.05 -39.58 -0.40 -1.61 16 6 C -0.13 -1.22 10.05 -39.58 -0.40 -1.62 16 7 C -0.12 -1.15 10.05 -39.58 -0.40 -1.54 16 8 C -0.11 -1.20 9.27 -39.58 -0.37 -1.56 16 9 C -0.14 -1.58 9.58 -26.69 -0.26 -1.83 16 10 C -0.18 -2.48 4.44 -91.77 -0.41 -2.89 16 11 H 0.13 1.68 4.53 -51.93 -0.24 1.44 16 12 C 0.54 9.33 7.46 -10.99 -0.08 9.25 16 13 O -0.55 -10.58 12.51 5.55 0.07 -10.51 16 14 N -0.59 -10.71 2.95 -172.51 -0.51 -11.22 16 15 C 0.10 1.78 6.59 -3.60 -0.02 1.75 16 16 C 0.13 2.77 6.67 -3.60 -0.02 2.74 16 17 N -0.59 -14.37 2.97 -172.06 -0.51 -14.88 16 18 C -0.26 -6.76 9.58 -15.05 -0.14 -6.91 16 19 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 20 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 21 N -0.90 -25.19 11.20 55.49 0.62 -24.57 16 22 Si 0.90 20.99 29.59 -169.99 -5.03 15.96 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.16 3.53 5.51 -3.62 -0.02 3.51 16 27 C 0.08 1.44 6.51 -3.62 -0.02 1.41 16 28 H 0.07 1.07 7.25 -51.93 -0.38 0.70 16 29 H 0.05 0.53 6.14 -51.93 -0.32 0.21 16 30 H 0.07 0.95 7.02 -51.92 -0.36 0.59 16 31 H 0.12 1.42 5.93 -52.49 -0.31 1.11 16 32 H 0.12 1.07 8.06 -52.48 -0.42 0.64 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.12 1.15 6.45 -52.49 -0.34 0.81 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 37 H 0.10 1.19 8.05 -51.93 -0.42 0.77 16 38 H 0.08 1.47 6.99 -51.93 -0.36 1.11 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.07 1.33 7.93 -51.93 -0.41 0.92 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.10 2.47 5.99 -51.93 -0.31 2.16 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 46 H 0.07 1.08 5.51 -51.93 -0.29 0.80 16 LS Contribution 359.42 15.07 5.42 5.42 Total: -1.00 -30.12 359.42 -10.28 -40.39 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -6.67 Total: 3.65 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -3.67 Total: -4.25 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: -0.40 Total: -50.66 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.07 Total: -10.51 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.12 -10.28 -40.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336226420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.203 kcal (2) G-P(sol) polarization free energy of solvation -30.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds