Wall clock time and date at job start Tue Mar 31 2020 11:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50702 * 115.56397 * 2 1 4 4 C 1.38231 * 120.00308 * 145.41223 * 3 2 1 5 5 C 1.38237 * 119.99704 * 179.74722 * 4 3 2 6 6 C 1.38238 * 120.00135 * 0.55165 * 5 4 3 7 7 C 1.38235 * 119.99896 * 359.70311 * 6 5 4 8 8 C 1.38235 * 120.00154 * 0.02562 * 7 6 5 9 9 C 1.53076 * 117.51594 * 214.29465 * 2 1 3 10 10 C 1.52996 * 59.98497 * 252.52184 * 9 2 1 11 11 H 1.08994 * 117.49890 * 252.49704 * 10 9 2 12 12 C 1.50699 * 117.49599 * 107.50260 * 10 9 2 13 13 O 1.21287 * 119.99936 * 291.24863 * 12 10 9 14 14 N 1.34774 * 119.99948 * 111.25478 * 12 10 9 15 15 C 1.46966 * 120.58877 * 179.97438 * 14 12 10 16 16 C 1.53370 * 108.63152 * 235.19817 * 15 14 12 17 17 N 1.46958 * 108.63971 * 310.57945 * 16 15 14 18 18 C 1.36942 * 120.59619 * 235.25204 * 17 16 15 19 19 H 1.07996 * 120.00227 * 28.13419 * 18 17 16 20 20 C 1.38818 * 119.99719 * 208.14915 * 18 17 16 21 21 N 1.31620 * 120.00074 * 17.56274 * 20 18 17 22 22 Si 1.86804 * 119.99712 * 197.56727 * 20 18 17 23 23 H 1.48494 * 109.46993 * 89.99435 * 22 20 18 24 24 H 1.48494 * 109.46917 * 209.99535 * 22 20 18 25 25 H 1.48503 * 109.46905 * 329.99669 * 22 20 18 26 26 C 1.46966 * 118.81395 * 55.22510 * 17 16 15 27 27 C 1.46966 * 120.59804 * 359.97210 * 14 12 10 28 28 H 1.08997 * 109.47767 * 274.30804 * 1 2 3 29 29 H 1.09003 * 109.47290 * 34.31206 * 1 2 3 30 30 H 1.09009 * 109.47350 * 154.31007 * 1 2 3 31 31 H 1.07997 * 120.00097 * 0.02562 * 4 3 2 32 32 H 1.08003 * 119.99805 * 180.27627 * 5 4 3 33 33 H 1.07997 * 119.99864 * 179.73062 * 6 5 4 34 34 H 1.07997 * 119.99841 * 179.97438 * 7 6 5 35 35 H 1.07994 * 120.00151 * 179.97438 * 8 7 6 36 36 H 1.09004 * 117.49055 * 145.03107 * 9 2 1 37 37 H 1.09001 * 117.53108 * 359.97438 * 9 2 1 38 38 H 1.08991 * 109.61637 * 354.94715 * 15 14 12 39 39 H 1.09006 * 109.61003 * 115.46085 * 15 14 12 40 40 H 1.09006 * 109.60639 * 70.32658 * 16 15 14 41 41 H 1.09004 * 109.61104 * 190.83065 * 16 15 14 42 42 H 0.97005 * 119.99467 * 180.02562 * 21 20 18 43 43 H 1.08999 * 109.61591 * 185.03288 * 26 17 16 44 44 H 1.08999 * 109.74855 * 64.60230 * 26 17 16 45 45 H 1.09000 * 109.60778 * 244.54659 * 27 14 12 46 46 H 1.08997 * 109.60345 * 4.88012 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.1802 1.3595 0.0000 4 6 3.3675 1.5578 0.6795 5 6 3.9667 2.8036 0.6751 6 6 3.3726 3.8539 0.0006 7 6 2.1825 3.6568 -0.6745 8 6 1.5863 2.4097 -0.6748 9 6 2.2371 -1.1216 -0.7649 10 6 2.2364 -1.1209 0.7650 11 1 3.1713 -0.8750 1.2686 12 6 1.3720 -2.1406 1.4608 13 8 0.1638 -2.0524 1.4025 14 7 1.9416 -3.1505 2.1479 15 6 1.1111 -4.1517 2.8318 16 6 1.5203 -4.2015 4.3090 17 7 2.9829 -4.3215 4.3874 18 6 3.5616 -5.3482 5.0848 19 1 3.0415 -6.2886 5.1924 20 6 4.8167 -5.1801 5.6536 21 7 5.3021 -3.9696 5.8310 22 14 5.8167 -6.6720 6.1673 23 1 6.6644 -7.1147 5.0313 24 1 6.6813 -6.3151 7.3206 25 1 4.8991 -7.7722 6.5583 26 6 3.8135 -3.3203 3.7036 27 6 3.4043 -3.2703 2.2267 28 1 -0.3634 0.0772 1.0247 29 1 -0.3634 0.8488 -0.5793 30 1 -0.3634 -0.9261 -0.4455 31 1 3.8294 0.7383 1.2102 32 1 4.8966 2.9574 1.2023 33 1 3.8384 4.8282 0.0009 34 1 1.7182 4.4775 -1.2011 35 1 0.6563 2.2559 -1.2019 36 1 3.1724 -0.8756 -1.2680 37 1 1.6127 -1.8599 -1.2680 38 1 0.0607 -3.8718 2.7524 39 1 1.2671 -5.1295 2.3759 40 1 1.2011 -3.2865 4.8081 41 1 1.0563 -5.0635 4.7884 42 1 6.1793 -3.8523 6.2281 43 1 4.8639 -3.6003 3.7829 44 1 3.6603 -2.3418 4.1587 45 1 3.7238 -4.1851 1.7276 46 1 3.8682 -2.4096 1.7450 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336226420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:11:34 Heat of formation + Delta-G solvation = 36.244209 kcal Electronic energy + Delta-G solvation = -26340.076543 eV Core-core repulsion = 22809.758631 eV Total energy + Delta-G solvation = -3530.317913 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.70600 -40.24903 -38.73528 -37.40312 -35.60602 -33.30670 -32.11807 -31.88054 -31.43104 -29.50706 -28.66904 -26.11537 -25.00365 -24.07806 -24.01369 -23.26427 -21.88326 -20.67300 -19.75535 -18.91073 -18.21287 -17.43097 -16.97380 -16.60646 -16.34991 -15.87459 -15.69744 -15.50591 -15.28129 -15.24370 -14.97267 -14.76249 -14.39205 -14.21944 -14.04696 -13.73851 -13.37085 -13.31183 -13.20315 -13.05937 -12.85133 -12.66927 -12.48444 -12.23237 -12.03744 -12.02409 -11.91511 -11.83145 -11.66950 -11.31649 -11.01702 -10.66609 -10.52449 -9.81238 -9.79530 -9.46405 -8.67651 -7.89957 -5.38306 0.41985 0.52758 1.47788 1.50008 1.51031 1.58662 2.00656 2.50504 2.65405 3.05854 3.24451 3.36805 3.54017 3.59896 3.73354 3.90617 3.98152 4.15980 4.22397 4.25888 4.28623 4.33833 4.36149 4.51217 4.59193 4.64027 4.66662 4.71621 4.75025 4.79900 4.88780 4.94409 4.96940 5.01712 5.05119 5.17026 5.21120 5.22177 5.41920 5.51732 5.60031 5.63699 5.65590 5.66120 5.73555 6.13967 6.33957 6.50009 7.09260 7.19561 7.76711 8.30528 9.15182 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018452 B = 0.003305 C = 0.002930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.112255 B = 8470.241632 C = 9553.453698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C -0.056 4.056 3 C -0.057 4.057 4 C -0.135 4.135 5 C -0.126 4.126 6 C -0.130 4.130 7 C -0.121 4.121 8 C -0.120 4.120 9 C -0.114 4.114 10 C -0.194 4.194 11 H 0.132 0.868 12 C 0.538 3.462 13 O -0.574 6.574 14 N -0.599 5.599 15 C 0.107 3.893 16 C 0.132 3.868 17 N -0.609 5.609 18 C -0.267 4.267 19 H 0.069 0.931 20 C -0.045 4.045 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.281 1.281 24 H -0.297 1.297 25 H -0.271 1.271 26 C 0.163 3.837 27 C 0.098 3.902 28 H 0.043 0.957 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.120 0.880 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.146 0.854 35 H 0.136 0.864 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.006 0.994 41 H 0.073 0.927 42 H 0.252 0.748 43 H 0.076 0.924 44 H -0.004 1.004 45 H 0.069 0.931 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.628 12.303 -16.187 20.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.057 4.057 3 C -0.057 4.057 4 C -0.153 4.153 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.139 4.139 8 C -0.138 4.138 9 C -0.151 4.151 10 C -0.215 4.215 11 H 0.150 0.850 12 C 0.327 3.673 13 O -0.455 6.455 14 N -0.331 5.331 15 C -0.017 4.017 16 C 0.006 3.994 17 N -0.332 5.332 18 C -0.396 4.396 19 H 0.087 0.913 20 C -0.241 4.241 21 N -0.578 5.578 22 Si 0.798 3.202 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.196 1.196 26 C 0.037 3.963 27 C -0.026 4.026 28 H 0.062 0.938 29 H 0.090 0.910 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.153 0.847 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.154 0.846 36 H 0.143 0.857 37 H 0.123 0.877 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.024 0.976 41 H 0.091 0.909 42 H 0.061 0.939 43 H 0.094 0.906 44 H 0.015 0.985 45 H 0.087 0.913 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -4.120 12.351 -16.110 20.714 hybrid contribution 0.749 -0.865 1.136 1.612 sum -3.371 11.486 -14.974 19.171 Atomic orbital electron populations 1.21254 0.90503 1.01750 1.01473 1.20211 0.95276 0.87623 1.02578 1.19102 0.95029 0.93177 0.98393 1.21236 0.95930 0.98358 0.99811 1.21402 1.00608 0.92812 0.99548 1.21492 0.96107 0.99678 0.97459 1.21456 0.95825 0.97266 0.99332 1.21205 1.00573 0.92548 0.99492 1.23269 1.03290 0.99138 0.89426 1.22419 1.01997 1.00027 0.97019 0.85004 1.20053 0.87859 0.81132 0.78208 1.90625 1.15597 1.75651 1.63617 1.48072 1.07943 1.26701 1.50341 1.21999 0.95226 0.91325 0.93179 1.21359 0.85209 0.98776 0.94079 1.44258 1.00368 1.30011 1.58581 1.19526 1.01283 0.91796 1.27043 0.91329 1.25797 1.00929 0.98706 0.98670 1.70170 1.18594 1.21476 1.47528 0.85241 0.78531 0.79353 0.77124 1.20777 1.22326 1.19591 1.21001 0.96638 0.90165 0.88498 1.22446 0.78848 1.02707 0.98627 0.93796 0.90998 0.92403 0.86223 0.84690 0.83903 0.83607 0.84606 0.85737 0.87715 0.89515 0.91105 0.97601 0.90902 0.93877 0.90605 0.98539 0.91261 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 7.97 71.98 0.57 -1.80 16 2 C -0.06 -1.35 2.55 -52.90 -0.14 -1.49 16 3 C -0.06 -1.28 5.45 -19.86 -0.11 -1.39 16 4 C -0.14 -3.03 9.39 22.27 0.21 -2.82 16 5 C -0.13 -2.42 10.05 22.27 0.22 -2.20 16 6 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 7 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 8 C -0.12 -2.30 9.27 22.27 0.21 -2.09 16 9 C -0.11 -2.41 9.58 30.62 0.29 -2.12 16 10 C -0.19 -5.20 4.44 -11.54 -0.05 -5.25 16 11 H 0.13 3.37 4.53 -2.39 -0.01 3.36 16 12 C 0.54 18.31 7.46 87.66 0.65 18.96 16 13 O -0.57 -21.90 12.51 -3.05 -0.04 -21.94 16 14 N -0.60 -21.39 2.95 -818.09 -2.41 -23.80 16 15 C 0.11 3.91 6.59 86.41 0.57 4.48 16 16 C 0.13 5.63 6.67 86.42 0.58 6.21 16 17 N -0.61 -30.06 2.97 -698.28 -2.07 -32.13 16 18 C -0.27 -14.25 9.58 84.03 0.80 -13.45 16 19 H 0.07 3.58 7.89 -2.91 -0.02 3.55 16 20 C -0.05 -2.44 4.90 84.86 0.42 -2.02 16 21 N -0.93 -53.20 11.20 21.65 0.24 -52.96 16 22 Si 0.97 43.40 29.59 68.60 2.03 45.43 16 23 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 24 H -0.30 -13.46 7.11 99.48 0.71 -12.75 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C 0.16 7.51 5.51 86.40 0.48 7.99 16 27 C 0.10 3.43 6.51 86.40 0.56 3.99 16 28 H 0.04 1.34 7.25 -2.39 -0.02 1.32 16 29 H 0.07 1.45 6.14 -2.39 -0.01 1.43 16 30 H 0.06 1.57 7.02 -2.38 -0.02 1.56 16 31 H 0.12 2.68 5.93 -2.91 -0.02 2.66 16 32 H 0.14 2.14 8.06 -2.91 -0.02 2.12 16 33 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 34 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 35 H 0.14 2.16 6.45 -2.91 -0.02 2.14 16 36 H 0.12 2.13 8.14 -2.38 -0.02 2.11 16 37 H 0.10 2.20 8.05 -2.39 -0.02 2.18 16 38 H 0.09 3.10 6.99 -2.39 -0.02 3.08 16 39 H 0.07 2.47 8.14 -2.38 -0.02 2.45 16 40 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 41 H 0.07 2.95 7.93 -2.38 -0.02 2.93 16 42 H 0.25 13.92 8.31 -92.70 -0.77 13.15 16 43 H 0.08 3.86 5.99 -2.39 -0.01 3.84 16 44 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.10 2.96 5.51 -2.39 -0.01 2.95 16 Total: -1.00 -65.39 359.42 4.45 -60.94 By element: Atomic # 1 Polarization: 20.13 SS G_CDS: 0.98 Total: 21.11 kcal Atomic # 6 Polarization: -2.36 SS G_CDS: 5.72 Total: 3.36 kcal Atomic # 7 Polarization: -104.65 SS G_CDS: -4.24 Total: -108.90 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: -0.04 Total: -21.94 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -65.39 4.45 -60.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336226420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.180 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds