Wall clock time and date at job start Tue Mar 31 2020 10:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39403 * 120.15101 * 2 1 4 4 C 1.43195 * 120.07656 * 359.97438 * 3 2 1 5 5 N 3.48224 * 80.49859 * 359.97438 * 2 1 3 6 6 C 1.39708 * 119.83730 * 180.02562 * 3 2 1 7 7 C 1.38090 * 120.14437 * 0.02562 * 6 3 2 8 8 C 1.38056 * 120.30089 * 359.74474 * 7 6 3 9 9 C 1.39291 * 120.15084 * 180.02562 * 2 1 3 10 10 C 1.47862 * 120.06946 * 359.94998 * 9 2 1 11 11 O 1.21548 * 120.00483 * 307.43676 * 10 9 2 12 12 N 1.34776 * 119.99574 * 127.16035 * 10 9 2 13 13 C 1.46500 * 120.00161 * 5.10707 * 12 10 9 14 14 C 1.50693 * 109.47210 * 95.89809 * 13 12 10 15 15 H 1.08004 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99898 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00373 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99742 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47113 * 90.00202 * 18 16 14 20 20 H 1.48500 * 109.46995 * 210.00222 * 18 16 14 21 21 H 1.48505 * 109.47282 * 330.00257 * 18 16 14 22 22 C 1.46501 * 120.00160 * 185.10919 * 12 10 9 23 23 C 1.53004 * 109.47522 * 89.99643 * 22 12 10 24 24 C 1.52991 * 109.47229 * 180.02562 * 23 22 12 25 25 C 1.52996 * 109.47168 * 175.00154 * 24 23 22 26 26 C 1.53008 * 109.47113 * 295.00004 * 24 23 22 27 27 H 1.08998 * 109.47338 * 274.55531 * 1 2 3 28 28 H 1.08999 * 109.47132 * 34.55631 * 1 2 3 29 29 H 1.09004 * 109.47631 * 154.55414 * 1 2 3 30 30 H 1.08008 * 119.92824 * 180.02562 * 6 3 2 31 31 H 1.07992 * 119.84954 * 179.97438 * 7 6 3 32 32 H 1.07994 * 119.92233 * 180.28068 * 8 7 6 33 33 H 1.09007 * 109.47052 * 215.89649 * 13 12 10 34 34 H 1.08995 * 109.46935 * 335.89124 * 13 12 10 35 35 H 0.97001 * 120.00573 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47592 * 209.99916 * 22 12 10 37 37 H 1.09005 * 109.46880 * 330.00048 * 22 12 10 38 38 H 1.09000 * 109.46909 * 300.00690 * 23 22 12 39 39 H 1.08996 * 109.46730 * 60.00161 * 23 22 12 40 40 H 1.09000 * 109.47733 * 55.00091 * 24 23 22 41 41 H 1.09000 * 109.47557 * 59.99620 * 25 24 23 42 42 H 1.09003 * 109.47546 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.47022 * 299.99705 * 25 24 23 44 44 H 1.09000 * 109.46721 * 299.99834 * 26 24 23 45 45 H 1.08993 * 109.47091 * 60.00098 * 26 24 23 46 46 H 1.09004 * 109.46724 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2071 1.2054 0.0000 4 6 1.4961 2.4484 -0.0006 5 7 0.9321 3.4345 -0.0015 6 6 3.6042 1.1978 -0.0005 7 6 4.2911 -0.0002 -0.0016 8 6 3.6036 -1.1973 0.0032 9 6 2.2066 -1.2045 -0.0005 10 6 1.4722 -2.4878 0.0000 11 8 0.6156 -2.6976 0.8364 12 7 1.7488 -3.4228 -0.9304 13 6 2.8517 -3.2153 -1.8721 14 6 4.0882 -3.9059 -1.3575 15 1 4.0560 -4.4451 -0.4223 16 6 5.2608 -3.8495 -2.0807 17 7 5.3003 -3.1925 -3.2192 18 14 6.7939 -4.7050 -1.4423 19 1 6.8345 -6.0972 -1.9572 20 1 7.9992 -3.9709 -1.9046 21 1 6.7667 -4.7269 0.0423 22 6 0.9465 -4.6466 -1.0002 23 6 -0.2385 -4.4267 -1.9428 24 6 -1.0766 -5.7046 -2.0152 25 6 -2.3275 -5.4471 -2.8575 26 6 -0.2502 -6.8208 -2.6573 27 1 -0.3634 0.0816 1.0244 28 1 -0.3633 0.8463 -0.5829 29 1 -0.3634 -0.9280 -0.4415 30 1 4.1482 2.1309 -0.0001 31 1 5.3710 -0.0005 -0.0024 32 1 4.1470 -2.1306 0.0069 33 1 2.5823 -3.6290 -2.8440 34 1 3.0471 -2.1478 -1.9733 35 1 6.1253 -3.1525 -3.7278 36 1 1.5624 -5.4640 -1.3754 37 1 0.5778 -4.8966 -0.0053 38 1 -0.8543 -3.6094 -1.5676 39 1 0.1302 -4.1768 -2.9376 40 1 -1.3712 -6.0035 -1.0092 41 1 -2.0331 -5.1482 -3.8635 42 1 -2.9245 -6.3576 -2.9094 43 1 -2.9162 -4.6519 -2.4000 44 1 0.0442 -6.5220 -3.6634 45 1 0.6409 -7.0043 -2.0573 46 1 -0.8476 -7.7312 -2.7092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338118089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:59 Heat of formation + Delta-G solvation = -5.563807 kcal Electronic energy + Delta-G solvation = -26471.424197 eV Core-core repulsion = 22939.293353 eV Total energy + Delta-G solvation = -3532.130844 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.14494 -38.40733 -36.60835 -36.15246 -34.89857 -32.68851 -32.59002 -31.39383 -29.11072 -27.35510 -27.06176 -26.80264 -24.13065 -23.29957 -23.07031 -21.48246 -19.80047 -19.33874 -17.78401 -16.64105 -16.09413 -15.98622 -15.51722 -15.29162 -14.94459 -14.52638 -14.35891 -14.02368 -13.86198 -13.42783 -13.33248 -12.88852 -12.87440 -12.69267 -12.62320 -12.48930 -12.40984 -12.13326 -12.06320 -11.83071 -11.64329 -11.47350 -11.31147 -11.15066 -10.96449 -10.88821 -10.81067 -10.69488 -10.50254 -10.28407 -10.14857 -9.81801 -9.24537 -8.74960 -8.52988 -8.47628 -7.80493 -6.30087 -4.38771 1.00611 1.35577 2.76051 3.01602 3.14203 3.23161 3.25021 3.38434 3.74173 4.09369 4.11899 4.24013 4.88370 4.94717 5.00563 5.04321 5.10726 5.12816 5.28678 5.34752 5.59834 5.63372 5.71527 5.78494 5.81012 5.82496 5.87432 5.93807 5.98314 6.00658 6.01257 6.09585 6.23677 6.28175 6.32179 6.37185 6.45842 6.58861 6.64515 6.70208 6.71935 6.72818 7.07099 7.13003 7.44013 7.59390 7.63466 7.92690 8.21832 8.65770 8.86310 9.28767 10.75537 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008024 B = 0.006092 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.493058 B = 4594.889038 C = 7440.963334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.004 3.996 3 C -0.061 4.061 4 C 0.271 3.729 5 N -0.437 5.437 6 C -0.053 4.053 7 C -0.134 4.134 8 C -0.027 4.027 9 C -0.123 4.123 10 C 0.560 3.440 11 O -0.562 6.562 12 N -0.586 5.586 13 C 0.230 3.770 14 C -0.544 4.544 15 H 0.064 0.936 16 C 0.071 3.929 17 N -0.882 5.882 18 Si 0.891 3.109 19 H -0.279 1.279 20 H -0.284 1.284 21 H -0.271 1.271 22 C 0.119 3.881 23 C -0.128 4.128 24 C -0.093 4.093 25 C -0.145 4.145 26 C -0.150 4.150 27 H 0.081 0.919 28 H 0.062 0.938 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.135 0.865 32 H 0.168 0.832 33 H 0.035 0.965 34 H 0.046 0.954 35 H 0.267 0.733 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.050 0.950 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 -0.188 1.940 5.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 C -0.064 4.064 4 C -0.044 4.044 5 N -0.113 5.113 6 C -0.073 4.073 7 C -0.152 4.152 8 C -0.046 4.046 9 C -0.126 4.126 10 C 0.347 3.653 11 O -0.443 6.443 12 N -0.315 5.315 13 C 0.111 3.889 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.134 4.134 17 N -0.519 5.519 18 Si 0.718 3.282 19 H -0.204 1.204 20 H -0.210 1.210 21 H -0.196 1.196 22 C -0.004 4.004 23 C -0.166 4.166 24 C -0.112 4.112 25 C -0.202 4.202 26 C -0.207 4.207 27 H 0.099 0.901 28 H 0.080 0.920 29 H 0.096 0.904 30 H 0.147 0.853 31 H 0.153 0.847 32 H 0.185 0.815 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.078 0.922 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.072 0.928 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.582 1.268 2.172 7.047 hybrid contribution 1.366 -0.846 -0.003 1.607 sum -5.216 0.422 2.170 5.665 Atomic orbital electron populations 1.20885 0.90427 1.03058 1.03116 1.19789 0.95992 0.90343 0.93779 1.15647 0.92326 0.86022 1.12420 1.25635 0.93020 0.92667 0.93046 1.81197 1.08729 1.11261 1.10080 1.21228 0.91558 0.99073 0.95476 1.21057 1.00654 0.91385 1.02098 1.22422 0.92900 1.01022 0.88263 1.19716 0.94292 0.92789 1.05793 1.18136 0.82187 0.83652 0.81279 1.90699 1.34744 1.80205 1.38657 1.48177 1.32662 1.17745 1.32894 1.19607 0.82866 0.98472 0.88004 1.21448 0.94544 1.34519 1.07753 0.91815 1.24927 0.98870 0.94938 0.94638 1.69919 1.28026 1.40436 1.13480 0.86600 0.82306 0.79840 0.79444 1.20444 1.20955 1.19562 1.21393 0.91956 0.87323 0.99753 1.21992 0.96877 0.97201 1.00554 1.21037 0.95205 0.95492 0.99458 1.21824 0.97318 1.01043 1.00048 1.21905 1.00008 0.97617 1.01160 0.90058 0.91956 0.90410 0.85273 0.84668 0.81480 0.94699 0.93606 0.92328 0.89937 0.90942 0.92169 0.91690 0.91318 0.92788 0.93062 0.92926 0.92601 0.92043 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.77 8.74 36.00 0.31 -1.45 16 2 C 0.00 0.07 5.95 -103.80 -0.62 -0.55 16 3 C -0.06 -0.89 5.73 -106.99 -0.61 -1.50 16 4 C 0.27 4.03 13.87 -22.48 -0.31 3.72 16 5 N -0.44 -7.07 18.54 41.84 0.78 -6.29 16 6 C -0.05 -0.70 9.75 -39.09 -0.38 -1.08 16 7 C -0.13 -1.94 10.02 -39.70 -0.40 -2.33 16 8 C -0.03 -0.47 7.63 -39.10 -0.30 -0.77 16 9 C -0.12 -2.20 4.77 -105.02 -0.50 -2.70 16 10 C 0.56 10.94 6.15 -12.32 -0.08 10.86 16 11 O -0.56 -11.80 15.39 5.32 0.08 -11.71 16 12 N -0.59 -11.36 2.46 -176.17 -0.43 -11.79 16 13 C 0.23 4.97 4.67 -5.20 -0.02 4.94 16 14 C -0.54 -12.55 7.01 -34.44 -0.24 -12.79 16 15 H 0.06 1.50 7.81 -52.48 -0.41 1.09 16 16 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 17 N -0.88 -22.16 13.29 55.43 0.74 -21.42 16 18 Si 0.89 18.69 29.54 -169.99 -5.02 13.67 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 22 C 0.12 2.03 5.22 -4.04 -0.02 2.01 16 23 C -0.13 -1.89 5.01 -26.73 -0.13 -2.03 16 24 C -0.09 -1.15 2.92 -90.62 -0.26 -1.41 16 25 C -0.14 -1.58 9.19 37.16 0.34 -1.24 16 26 C -0.15 -1.78 8.95 37.16 0.33 -1.45 16 27 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.85 7.26 -51.93 -0.38 0.48 16 29 H 0.08 1.24 6.55 -51.93 -0.34 0.90 16 30 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 31 H 0.14 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.17 3.22 5.28 -52.49 -0.28 2.95 16 33 H 0.03 0.81 8.12 -51.93 -0.42 0.39 16 34 H 0.05 1.03 5.59 -51.93 -0.29 0.74 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.08 1.41 6.50 -51.93 -0.34 1.07 16 37 H 0.07 1.26 7.36 -51.93 -0.38 0.88 16 38 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.77 6.56 -51.93 -0.34 0.42 16 46 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 380.29 15.07 5.73 5.73 Total: -1.00 -26.05 380.29 -8.08 -34.13 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -6.96 Total: 3.87 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -2.99 Total: -6.18 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 1.08 Total: -39.50 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: 0.08 Total: -11.71 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -26.05 -8.08 -34.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338118089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.567 kcal (2) G-P(sol) polarization free energy of solvation -26.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds