Wall clock time and date at job start Tue Mar 31 2020 10:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.39403 * 120.15101 * 2 1 4 4 C 1.43195 * 120.07656 * 359.97438 * 3 2 1 5 5 N 3.48224 * 80.49859 * 359.97438 * 2 1 3 6 6 C 1.39708 * 119.83730 * 180.02562 * 3 2 1 7 7 C 1.38090 * 120.14437 * 0.02562 * 6 3 2 8 8 C 1.38056 * 120.30089 * 359.74474 * 7 6 3 9 9 C 1.39291 * 120.15084 * 180.02562 * 2 1 3 10 10 C 1.47862 * 120.06946 * 359.94998 * 9 2 1 11 11 O 1.21548 * 120.00483 * 307.43676 * 10 9 2 12 12 N 1.34776 * 119.99574 * 127.16035 * 10 9 2 13 13 C 1.46500 * 120.00161 * 5.10707 * 12 10 9 14 14 C 1.50693 * 109.47210 * 95.89809 * 13 12 10 15 15 H 1.08004 * 119.99935 * 359.97438 * 14 13 12 16 16 C 1.37880 * 119.99898 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00373 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 119.99742 * 179.97438 * 16 14 13 19 19 H 1.48492 * 109.47113 * 90.00202 * 18 16 14 20 20 H 1.48500 * 109.46995 * 210.00222 * 18 16 14 21 21 H 1.48505 * 109.47282 * 330.00257 * 18 16 14 22 22 C 1.46501 * 120.00160 * 185.10919 * 12 10 9 23 23 C 1.53004 * 109.47522 * 89.99643 * 22 12 10 24 24 C 1.52991 * 109.47229 * 180.02562 * 23 22 12 25 25 C 1.52996 * 109.47168 * 175.00154 * 24 23 22 26 26 C 1.53008 * 109.47113 * 295.00004 * 24 23 22 27 27 H 1.08998 * 109.47338 * 274.55531 * 1 2 3 28 28 H 1.08999 * 109.47132 * 34.55631 * 1 2 3 29 29 H 1.09004 * 109.47631 * 154.55414 * 1 2 3 30 30 H 1.08008 * 119.92824 * 180.02562 * 6 3 2 31 31 H 1.07992 * 119.84954 * 179.97438 * 7 6 3 32 32 H 1.07994 * 119.92233 * 180.28068 * 8 7 6 33 33 H 1.09007 * 109.47052 * 215.89649 * 13 12 10 34 34 H 1.08995 * 109.46935 * 335.89124 * 13 12 10 35 35 H 0.97001 * 120.00573 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.47592 * 209.99916 * 22 12 10 37 37 H 1.09005 * 109.46880 * 330.00048 * 22 12 10 38 38 H 1.09000 * 109.46909 * 300.00690 * 23 22 12 39 39 H 1.08996 * 109.46730 * 60.00161 * 23 22 12 40 40 H 1.09000 * 109.47733 * 55.00091 * 24 23 22 41 41 H 1.09000 * 109.47557 * 59.99620 * 25 24 23 42 42 H 1.09003 * 109.47546 * 179.97438 * 25 24 23 43 43 H 1.09000 * 109.47022 * 299.99705 * 25 24 23 44 44 H 1.09000 * 109.46721 * 299.99834 * 26 24 23 45 45 H 1.08993 * 109.47091 * 60.00098 * 26 24 23 46 46 H 1.09004 * 109.46724 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2071 1.2054 0.0000 4 6 1.4961 2.4484 -0.0006 5 7 0.9321 3.4345 -0.0015 6 6 3.6042 1.1978 -0.0005 7 6 4.2911 -0.0002 -0.0016 8 6 3.6036 -1.1973 0.0032 9 6 2.2066 -1.2045 -0.0005 10 6 1.4722 -2.4878 0.0000 11 8 0.6156 -2.6976 0.8364 12 7 1.7488 -3.4228 -0.9304 13 6 2.8517 -3.2153 -1.8721 14 6 4.0882 -3.9059 -1.3575 15 1 4.0560 -4.4451 -0.4223 16 6 5.2608 -3.8495 -2.0807 17 7 5.3003 -3.1925 -3.2192 18 14 6.7939 -4.7050 -1.4423 19 1 6.8345 -6.0972 -1.9572 20 1 7.9992 -3.9709 -1.9046 21 1 6.7667 -4.7269 0.0423 22 6 0.9465 -4.6466 -1.0002 23 6 -0.2385 -4.4267 -1.9428 24 6 -1.0766 -5.7046 -2.0152 25 6 -2.3275 -5.4471 -2.8575 26 6 -0.2502 -6.8208 -2.6573 27 1 -0.3634 0.0816 1.0244 28 1 -0.3633 0.8463 -0.5829 29 1 -0.3634 -0.9280 -0.4415 30 1 4.1482 2.1309 -0.0001 31 1 5.3710 -0.0005 -0.0024 32 1 4.1470 -2.1306 0.0069 33 1 2.5823 -3.6290 -2.8440 34 1 3.0471 -2.1478 -1.9733 35 1 6.1253 -3.1525 -3.7278 36 1 1.5624 -5.4640 -1.3754 37 1 0.5778 -4.8966 -0.0053 38 1 -0.8543 -3.6094 -1.5676 39 1 0.1302 -4.1768 -2.9376 40 1 -1.3712 -6.0035 -1.0092 41 1 -2.0331 -5.1482 -3.8635 42 1 -2.9245 -6.3576 -2.9094 43 1 -2.9162 -4.6519 -2.4000 44 1 0.0442 -6.5220 -3.6634 45 1 0.6409 -7.0043 -2.0573 46 1 -0.8476 -7.7312 -2.7092 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338118089.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:59 Heat of formation + Delta-G solvation = -15.480254 kcal Electronic energy + Delta-G solvation = -26471.854206 eV Core-core repulsion = 22939.293353 eV Total energy + Delta-G solvation = -3532.560854 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.54524 -39.76392 -37.83808 -37.42894 -36.40661 -34.44638 -33.82353 -32.67717 -30.47081 -28.96352 -28.17381 -27.95526 -25.42125 -24.93276 -24.47033 -22.76797 -20.90055 -20.65143 -19.26273 -18.43275 -17.53085 -17.43438 -16.81416 -16.64737 -16.24432 -16.04848 -15.65631 -15.27136 -15.11969 -14.60840 -14.54647 -14.29093 -14.15628 -14.10446 -13.98443 -13.82121 -13.66103 -13.47915 -13.30002 -13.08934 -12.89791 -12.83521 -12.68060 -12.55716 -12.51066 -12.21002 -12.13818 -12.01127 -11.81910 -11.57608 -11.52632 -11.37259 -10.78273 -10.54556 -9.83806 -9.73681 -9.41464 -8.14029 -6.27789 -0.22678 0.10513 1.46428 1.51336 1.54467 1.58343 1.68701 2.00333 2.28751 2.48529 2.84273 2.87906 3.15981 3.61456 3.70058 3.94489 3.96323 4.02620 4.10171 4.18378 4.35565 4.45345 4.58702 4.60177 4.62039 4.71574 4.72768 4.75333 4.79262 4.85726 4.93223 4.97611 5.06401 5.08238 5.15477 5.18291 5.26141 5.27920 5.35413 5.43620 5.48661 5.49624 5.54277 5.71305 5.83180 5.86928 6.10556 6.39654 6.57824 6.84863 7.26989 7.44045 8.91124 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008024 B = 0.006092 C = 0.003762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3488.493058 B = 4594.889038 C = 7440.963334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.001 4.001 3 C -0.058 4.058 4 C 0.288 3.712 5 N -0.455 5.455 6 C -0.032 4.032 7 C -0.130 4.130 8 C -0.042 4.042 9 C -0.146 4.146 10 C 0.558 3.442 11 O -0.582 6.582 12 N -0.590 5.590 13 C 0.248 3.752 14 C -0.542 4.542 15 H 0.055 0.945 16 C 0.036 3.964 17 N -0.910 5.910 18 Si 0.946 3.054 19 H -0.282 1.282 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.117 3.883 23 C -0.117 4.117 24 C -0.090 4.090 25 C -0.142 4.142 26 C -0.148 4.148 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.145 0.855 33 H 0.014 0.986 34 H 0.038 0.962 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.050 0.950 39 H 0.055 0.945 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 0.461 2.195 5.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.004 4.004 3 C -0.061 4.061 4 C -0.027 4.027 5 N -0.131 5.131 6 C -0.052 4.052 7 C -0.148 4.148 8 C -0.061 4.061 9 C -0.149 4.149 10 C 0.347 3.653 11 O -0.464 6.464 12 N -0.318 5.318 13 C 0.128 3.872 14 C -0.580 4.580 15 H 0.073 0.927 16 C -0.166 4.166 17 N -0.549 5.549 18 Si 0.771 3.229 19 H -0.208 1.208 20 H -0.206 1.206 21 H -0.192 1.192 22 C -0.005 4.005 23 C -0.155 4.155 24 C -0.109 4.109 25 C -0.199 4.199 26 C -0.205 4.205 27 H 0.104 0.896 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.186 0.814 31 H 0.177 0.823 32 H 0.162 0.838 33 H 0.032 0.968 34 H 0.056 0.944 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -6.174 1.908 2.433 6.905 hybrid contribution 1.221 -1.028 -0.056 1.597 sum -4.953 0.880 2.377 5.564 Atomic orbital electron populations 1.20844 0.89957 1.02755 1.03452 1.19879 0.96470 0.90332 0.93726 1.15669 0.92986 0.85246 1.12218 1.25476 0.92497 0.92269 0.92410 1.81229 1.09193 1.11923 1.10742 1.21595 0.90911 1.00113 0.92626 1.21294 1.01803 0.90629 1.01059 1.22263 0.92670 1.01399 0.89795 1.19640 0.94637 0.92499 1.08100 1.18443 0.81948 0.84214 0.80718 1.90668 1.35739 1.80757 1.39272 1.48199 1.32493 1.18566 1.32580 1.19243 0.83055 0.97592 0.87351 1.21514 0.95177 1.34058 1.07233 0.92653 1.25477 1.01049 0.95393 0.94694 1.70004 1.28658 1.41723 1.14480 0.85744 0.79505 0.78588 0.79016 1.20769 1.20609 1.19150 1.21499 0.92440 0.86508 1.00064 1.21886 0.96099 0.98448 0.99108 1.21027 0.95510 0.94139 1.00179 1.21793 0.96595 1.01968 0.99539 1.21884 0.99839 0.98250 1.00504 0.89612 0.90745 0.91894 0.81446 0.82336 0.83792 0.96753 0.94372 0.92290 0.90257 0.91357 0.93093 0.92654 0.90974 0.92873 0.91270 0.92913 0.93108 0.93078 0.91264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.36 8.74 71.23 0.62 -2.74 16 2 C 0.00 -0.02 5.95 -19.33 -0.11 -0.13 16 3 C -0.06 -1.57 5.73 -21.40 -0.12 -1.69 16 4 C 0.29 7.92 13.87 88.33 1.23 9.14 16 5 N -0.45 -13.78 18.54 19.00 0.35 -13.43 16 6 C -0.03 -0.75 9.75 22.59 0.22 -0.53 16 7 C -0.13 -3.49 10.02 22.19 0.22 -3.27 16 8 C -0.04 -1.46 7.63 22.58 0.17 -1.29 16 9 C -0.15 -5.26 4.77 -20.12 -0.10 -5.36 16 10 C 0.56 22.44 6.15 86.79 0.53 22.97 16 11 O -0.58 -25.05 15.39 -3.87 -0.06 -25.11 16 12 N -0.59 -23.71 2.46 -829.55 -2.04 -25.75 16 13 C 0.25 11.05 4.67 85.63 0.40 11.46 16 14 C -0.54 -25.42 7.01 25.60 0.18 -25.24 16 15 H 0.06 2.66 7.81 -2.91 -0.02 2.63 16 16 C 0.04 1.70 5.46 84.66 0.46 2.16 16 17 N -0.91 -45.97 13.29 21.45 0.28 -45.69 16 18 Si 0.95 38.14 29.54 68.60 2.03 40.17 16 19 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 20 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 21 H -0.27 -10.51 7.11 99.48 0.71 -9.81 16 22 C 0.12 4.15 5.22 86.38 0.45 4.60 16 23 C -0.12 -3.56 5.01 30.59 0.15 -3.41 16 24 C -0.09 -2.17 2.92 -10.79 -0.03 -2.20 16 25 C -0.14 -2.92 9.19 71.98 0.66 -2.26 16 26 C -0.15 -3.42 8.95 71.98 0.64 -2.77 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 28 H 0.07 1.98 7.26 -2.39 -0.02 1.96 16 29 H 0.06 2.04 6.55 -2.38 -0.02 2.02 16 30 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.16 3.50 8.06 -2.91 -0.02 3.47 16 32 H 0.14 5.66 5.28 -2.91 -0.02 5.65 16 33 H 0.01 0.69 8.12 -2.38 -0.02 0.68 16 34 H 0.04 1.77 5.59 -2.39 -0.01 1.76 16 35 H 0.27 12.92 8.31 -92.71 -0.77 12.15 16 36 H 0.08 2.82 6.50 -2.39 -0.02 2.80 16 37 H 0.07 2.46 7.36 -2.38 -0.02 2.44 16 38 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 45 H 0.05 1.27 6.56 -2.39 -0.02 1.26 16 46 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 Total: -1.00 -55.71 380.29 7.12 -48.59 By element: Atomic # 1 Polarization: 20.80 SS G_CDS: 0.98 Total: 21.77 kcal Atomic # 6 Polarization: -6.13 SS G_CDS: 5.58 Total: -0.55 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -1.40 Total: -84.86 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -0.06 Total: -25.11 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Total: -55.71 7.12 -48.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338118089.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.109 kcal (2) G-P(sol) polarization free energy of solvation -55.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds