Wall clock time and date at job start Tue Mar 31 2020 11:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.29824 * 118.55212 * 2 1 4 4 C 1.50141 * 123.28055 * 180.11331 * 3 2 1 5 5 N 1.46836 * 110.27534 * 343.20827 * 4 3 2 6 6 C 1.46900 * 111.00125 * 287.53838 * 5 4 3 7 7 C 1.53010 * 109.47174 * 293.95380 * 6 5 4 8 8 N 1.46494 * 109.47151 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00286 * 180.02562 * 8 7 6 10 10 O 1.21549 * 119.99583 * 359.97438 * 9 8 7 11 11 C 1.47882 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.39915 * 120.02709 * 359.71990 * 11 9 8 13 13 C 1.38331 * 120.35757 * 179.74363 * 12 11 9 14 14 C 1.37752 * 120.41234 * 0.55643 * 13 12 11 15 15 C 1.40754 * 120.03931 * 359.70716 * 14 13 12 16 16 C 1.41435 * 120.17911 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00053 * 24.42683 * 16 15 14 18 18 C 1.39941 * 119.99938 * 204.43811 * 16 15 14 19 19 N 1.30828 * 119.99858 * 17.87117 * 18 16 15 20 20 Si 1.86791 * 119.99841 * 197.87748 * 18 16 15 21 21 H 1.48501 * 109.47396 * 89.99298 * 20 18 16 22 22 H 1.48506 * 109.47356 * 209.99669 * 20 18 16 23 23 H 1.48501 * 109.47187 * 329.99672 * 20 18 16 24 24 C 1.39000 * 120.02290 * 179.97438 * 11 9 8 25 25 C 1.47235 * 110.20816 * 50.92827 * 5 4 3 26 26 C 1.50306 * 118.55011 * 180.23703 * 2 1 3 27 27 H 1.08999 * 109.47078 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46766 * 120.00244 * 1 2 3 29 29 H 1.09001 * 109.46848 * 240.00114 * 1 2 3 30 30 H 1.08000 * 118.36046 * 0.39792 * 3 2 1 31 31 H 1.08995 * 109.33777 * 103.46147 * 4 3 2 32 32 H 1.09004 * 109.33662 * 222.95998 * 4 3 2 33 33 H 1.08992 * 109.47275 * 53.95400 * 6 5 4 34 34 H 1.09005 * 109.47417 * 173.95828 * 6 5 4 35 35 H 1.09006 * 109.46935 * 300.00066 * 7 6 5 36 36 H 1.08995 * 109.46520 * 59.99723 * 7 6 5 37 37 H 0.97005 * 120.00116 * 359.97438 * 8 7 6 38 38 H 1.08004 * 119.82171 * 0.02562 * 12 11 9 39 39 H 1.07996 * 119.79431 * 180.28622 * 13 12 11 40 40 H 1.08004 * 119.98017 * 179.72018 * 14 13 12 41 41 H 0.97001 * 119.99465 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.20191 * 359.95750 * 24 11 9 43 43 H 1.08998 * 109.63740 * 50.88620 * 25 5 4 44 44 H 1.09000 * 109.63896 * 171.49751 * 25 5 4 45 45 H 1.08993 * 109.56335 * 43.51130 * 26 2 1 46 46 H 1.09006 * 109.24667 * 283.69008 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1276 1.1404 0.0000 4 6 3.6239 1.2641 -0.0025 5 7 4.2404 -0.0085 0.3932 6 6 4.0575 -0.2581 1.8292 7 6 4.8344 0.7877 2.6317 8 7 4.6525 0.5384 4.0637 9 6 5.2482 1.3404 4.9684 10 8 5.9367 2.2703 4.5960 11 6 5.0641 1.0891 6.4141 12 6 4.2668 0.0224 6.8433 13 6 4.0942 -0.2221 8.1938 14 6 4.6956 0.5881 9.1316 15 6 5.4967 1.6692 8.7188 16 6 6.1160 2.5027 9.6792 17 1 6.3192 2.1256 10.6706 18 6 6.4651 3.8159 9.3448 19 7 5.9261 4.3903 8.3003 20 14 7.7009 4.7486 10.3899 21 1 9.0700 4.5145 9.8647 22 1 7.3938 6.2008 10.3418 23 1 7.6213 4.2721 11.7941 24 6 5.6786 1.9156 7.3475 25 6 3.6875 -1.1125 -0.4089 26 6 2.2255 -1.3203 -0.0055 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.5380 2.0452 0.0066 31 1 3.9621 1.5334 -1.0030 32 1 3.9228 2.0434 0.6987 33 1 2.9982 -0.1930 2.0773 34 1 4.4279 -1.2533 2.0751 35 1 5.8938 0.7227 2.3836 36 1 4.4641 1.7829 2.3857 37 1 4.1027 -0.2034 4.3609 38 1 3.7873 -0.6163 6.1162 39 1 3.4806 -1.0508 8.5150 40 1 4.5524 0.3935 10.1843 41 1 6.1685 5.3005 8.0683 42 1 6.2921 2.7423 7.0207 43 1 3.7429 -0.8596 -1.4677 44 1 4.2536 -2.0240 -0.2169 45 1 1.7456 -1.9939 -0.7153 46 1 2.1832 -1.7564 0.9926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348350077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:13 Heat of formation + Delta-G solvation = -3.855984 kcal Electronic energy + Delta-G solvation = -25302.277358 eV Core-core repulsion = 21770.220571 eV Total energy + Delta-G solvation = -3532.056787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.12849 -39.04141 -37.01609 -35.18639 -33.87602 -33.57709 -31.28409 -30.54634 -29.46293 -29.17049 -27.11824 -25.31616 -24.31231 -23.60744 -22.11106 -21.35930 -20.86262 -19.53333 -17.93160 -17.35681 -16.52588 -16.02502 -15.85206 -15.32127 -15.23372 -14.94392 -14.57337 -14.49800 -14.35989 -13.79546 -13.61201 -13.39103 -13.15922 -12.92260 -12.61301 -12.48898 -12.46431 -12.19804 -12.10510 -11.84545 -11.65449 -11.53489 -11.18616 -11.11888 -11.02576 -10.87797 -10.71597 -10.48560 -10.00918 -9.68460 -9.21140 -9.04746 -9.01018 -8.60658 -8.55420 -7.62104 -7.51495 -6.79467 -4.40796 1.90602 2.22700 2.82273 3.08494 3.11682 3.16578 3.38098 3.89153 3.93065 4.07509 4.42434 4.58148 4.64839 4.70977 4.84553 4.89245 5.05905 5.20438 5.24457 5.27844 5.37590 5.42585 5.48180 5.56774 5.57305 5.61506 5.62913 5.69513 5.77346 5.98818 6.04681 6.14433 6.26715 6.28097 6.61955 6.72508 6.76568 6.81028 6.92969 7.00003 7.03178 7.22110 7.38909 7.70900 7.76838 7.93506 8.10878 8.20245 8.51488 8.80957 8.84293 8.97983 10.15268 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002589 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.591146 B =10812.218791 C =11324.677643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.129 4.129 3 C -0.189 4.189 4 C 0.073 3.927 5 N -0.523 5.523 6 C 0.040 3.960 7 C 0.125 3.875 8 N -0.737 5.737 9 C 0.565 3.435 10 O -0.545 6.545 11 C -0.127 4.127 12 C -0.218 4.218 13 C -0.098 4.098 14 C -0.212 4.212 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.266 1.266 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.092 4.092 25 C 0.054 3.946 26 C -0.122 4.122 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.063 0.937 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.285 0.715 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.076 0.924 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.517 -8.739 -15.865 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.129 4.129 3 C -0.208 4.208 4 C -0.055 4.055 5 N -0.245 5.245 6 C -0.088 4.088 7 C 0.001 3.999 8 N -0.391 5.391 9 C 0.355 3.645 10 O -0.423 6.423 11 C -0.131 4.131 12 C -0.238 4.238 13 C -0.116 4.116 14 C -0.232 4.232 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.191 1.191 22 H -0.202 1.202 23 H -0.186 1.186 24 C -0.112 4.112 25 C -0.074 4.074 26 C -0.160 4.160 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.106 0.894 32 H 0.109 0.891 33 H 0.066 0.934 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.096 0.904 42 H 0.152 0.848 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -6.498 -7.785 -16.372 19.258 hybrid contribution -0.925 0.084 0.687 1.156 sum -7.423 -7.701 -15.685 18.985 Atomic orbital electron populations 1.20911 0.92320 1.02370 1.01916 1.20948 0.95890 0.94771 1.01320 1.22807 0.97910 0.97747 1.02339 1.21226 0.89225 0.92675 1.02380 1.62595 1.55736 1.02566 1.03645 1.22297 0.99177 0.99653 0.87691 1.21152 1.00725 0.97992 0.80044 1.45853 1.53755 1.34031 1.05489 1.18819 0.78106 0.80887 0.86694 1.90698 1.39442 1.30580 1.81578 1.19474 1.03649 0.99380 0.90571 1.20328 1.07449 1.00996 0.95073 1.20428 0.99662 0.98439 0.93079 1.21097 1.03665 1.01094 0.97390 1.17607 0.89431 0.91188 0.92186 1.19598 1.34257 0.95821 0.99201 0.90052 1.25972 0.95213 0.98128 0.95323 1.69794 1.33720 1.13748 1.23429 0.86265 0.81085 0.78368 0.80770 1.19120 1.20228 1.18586 1.21646 0.99263 0.98458 0.91867 1.22275 0.92219 0.94767 0.98168 1.21053 0.96962 0.95392 1.02624 0.92081 0.91836 0.91737 0.87394 0.89390 0.89088 0.93442 0.90213 0.91050 0.91916 0.76758 0.89314 0.88939 0.88630 0.90429 0.84822 0.90311 0.90020 0.90529 0.90590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.91 10.02 36.01 0.36 -0.55 16 2 C -0.13 -1.15 5.23 -100.92 -0.53 -1.68 16 3 C -0.19 -1.80 8.99 -35.97 -0.32 -2.13 16 4 C 0.07 0.72 5.83 -5.28 -0.03 0.69 16 5 N -0.52 -5.36 5.03 -236.12 -1.19 -6.55 16 6 C 0.04 0.44 4.18 -3.82 -0.02 0.43 16 7 C 0.13 1.82 5.63 -4.04 -0.02 1.80 16 8 N -0.74 -12.41 5.51 -61.24 -0.34 -12.74 16 9 C 0.56 12.57 7.77 -12.31 -0.10 12.48 16 10 O -0.55 -13.96 16.33 5.32 0.09 -13.88 16 11 C -0.13 -3.04 5.87 -105.04 -0.62 -3.66 16 12 C -0.22 -4.61 9.55 -38.92 -0.37 -4.98 16 13 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 14 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 15 C 0.10 2.62 5.57 -106.87 -0.60 2.02 16 16 C -0.46 -12.14 9.05 -37.73 -0.34 -12.48 16 17 H 0.08 2.04 7.91 -52.49 -0.42 1.62 16 18 C 0.07 1.85 5.14 -17.34 -0.09 1.76 16 19 N -0.78 -20.88 10.96 55.55 0.61 -20.27 16 20 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 C -0.09 -2.48 8.24 -38.44 -0.32 -2.80 16 25 C 0.05 0.44 6.03 -3.60 -0.02 0.42 16 26 C -0.12 -0.96 5.27 -28.03 -0.15 -1.10 16 27 H 0.06 0.46 7.62 -51.93 -0.40 0.06 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.11 0.99 7.63 -52.49 -0.40 0.59 16 31 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 0.99 6.01 -51.93 -0.31 0.68 16 33 H 0.05 0.53 5.99 -51.93 -0.31 0.22 16 34 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 36 H 0.06 0.97 6.33 -51.93 -0.33 0.64 16 37 H 0.40 5.75 6.49 -40.82 -0.26 5.48 16 38 H 0.09 1.54 6.38 -52.48 -0.33 1.20 16 39 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.10 2.12 8.06 -52.48 -0.42 1.69 16 41 H 0.28 6.98 8.30 -40.82 -0.34 6.64 16 42 H 0.13 3.90 5.74 -52.48 -0.30 3.60 16 43 H 0.08 0.60 8.08 -51.93 -0.42 0.18 16 44 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.62 7.13 -51.93 -0.37 0.25 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -30.05 367.56 -11.04 -41.09 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -6.79 Total: 10.66 kcal Atomic # 6 Polarization: -13.78 SS G_CDS: -3.93 Total: -17.72 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: -0.92 Total: -39.57 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.05 -11.04 -41.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348350077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.234 kcal (2) G-P(sol) polarization free energy of solvation -30.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds