Wall clock time and date at job start Tue Mar 31 2020 11:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.29824 * 118.55212 * 2 1 4 4 C 1.50141 * 123.28055 * 180.11331 * 3 2 1 5 5 N 1.46836 * 110.27534 * 343.20827 * 4 3 2 6 6 C 1.46900 * 111.00125 * 287.53838 * 5 4 3 7 7 C 1.53010 * 109.47174 * 293.95380 * 6 5 4 8 8 N 1.46494 * 109.47151 * 180.02562 * 7 6 5 9 9 C 1.34778 * 120.00286 * 180.02562 * 8 7 6 10 10 O 1.21549 * 119.99583 * 359.97438 * 9 8 7 11 11 C 1.47882 * 120.00126 * 179.97438 * 9 8 7 12 12 C 1.39915 * 120.02709 * 359.71990 * 11 9 8 13 13 C 1.38331 * 120.35757 * 179.74363 * 12 11 9 14 14 C 1.37752 * 120.41234 * 0.55643 * 13 12 11 15 15 C 1.40754 * 120.03931 * 359.70716 * 14 13 12 16 16 C 1.41435 * 120.17911 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00053 * 24.42683 * 16 15 14 18 18 C 1.39941 * 119.99938 * 204.43811 * 16 15 14 19 19 N 1.30828 * 119.99858 * 17.87117 * 18 16 15 20 20 Si 1.86791 * 119.99841 * 197.87748 * 18 16 15 21 21 H 1.48501 * 109.47396 * 89.99298 * 20 18 16 22 22 H 1.48506 * 109.47356 * 209.99669 * 20 18 16 23 23 H 1.48501 * 109.47187 * 329.99672 * 20 18 16 24 24 C 1.39000 * 120.02290 * 179.97438 * 11 9 8 25 25 C 1.47235 * 110.20816 * 50.92827 * 5 4 3 26 26 C 1.50306 * 118.55011 * 180.23703 * 2 1 3 27 27 H 1.08999 * 109.47078 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46766 * 120.00244 * 1 2 3 29 29 H 1.09001 * 109.46848 * 240.00114 * 1 2 3 30 30 H 1.08000 * 118.36046 * 0.39792 * 3 2 1 31 31 H 1.08995 * 109.33777 * 103.46147 * 4 3 2 32 32 H 1.09004 * 109.33662 * 222.95998 * 4 3 2 33 33 H 1.08992 * 109.47275 * 53.95400 * 6 5 4 34 34 H 1.09005 * 109.47417 * 173.95828 * 6 5 4 35 35 H 1.09006 * 109.46935 * 300.00066 * 7 6 5 36 36 H 1.08995 * 109.46520 * 59.99723 * 7 6 5 37 37 H 0.97005 * 120.00116 * 359.97438 * 8 7 6 38 38 H 1.08004 * 119.82171 * 0.02562 * 12 11 9 39 39 H 1.07996 * 119.79431 * 180.28622 * 13 12 11 40 40 H 1.08004 * 119.98017 * 179.72018 * 14 13 12 41 41 H 0.97001 * 119.99465 * 180.02562 * 19 18 16 42 42 H 1.08004 * 120.20191 * 359.95750 * 24 11 9 43 43 H 1.08998 * 109.63740 * 50.88620 * 25 5 4 44 44 H 1.09000 * 109.63896 * 171.49751 * 25 5 4 45 45 H 1.08993 * 109.56335 * 43.51130 * 26 2 1 46 46 H 1.09006 * 109.24667 * 283.69008 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1276 1.1404 0.0000 4 6 3.6239 1.2641 -0.0025 5 7 4.2404 -0.0085 0.3932 6 6 4.0575 -0.2581 1.8292 7 6 4.8344 0.7877 2.6317 8 7 4.6525 0.5384 4.0637 9 6 5.2482 1.3404 4.9684 10 8 5.9367 2.2703 4.5960 11 6 5.0641 1.0891 6.4141 12 6 4.2668 0.0224 6.8433 13 6 4.0942 -0.2221 8.1938 14 6 4.6956 0.5881 9.1316 15 6 5.4967 1.6692 8.7188 16 6 6.1160 2.5027 9.6792 17 1 6.3192 2.1256 10.6706 18 6 6.4651 3.8159 9.3448 19 7 5.9261 4.3903 8.3003 20 14 7.7009 4.7486 10.3899 21 1 9.0700 4.5145 9.8647 22 1 7.3938 6.2008 10.3418 23 1 7.6213 4.2721 11.7941 24 6 5.6786 1.9156 7.3475 25 6 3.6875 -1.1125 -0.4089 26 6 2.2255 -1.3203 -0.0055 27 1 -0.3633 1.0277 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 -0.3633 -0.5138 0.8900 30 1 1.5380 2.0452 0.0066 31 1 3.9621 1.5334 -1.0030 32 1 3.9228 2.0434 0.6987 33 1 2.9982 -0.1930 2.0773 34 1 4.4279 -1.2533 2.0751 35 1 5.8938 0.7227 2.3836 36 1 4.4641 1.7829 2.3857 37 1 4.1027 -0.2034 4.3609 38 1 3.7873 -0.6163 6.1162 39 1 3.4806 -1.0508 8.5150 40 1 4.5524 0.3935 10.1843 41 1 6.1685 5.3005 8.0683 42 1 6.2921 2.7423 7.0207 43 1 3.7429 -0.8596 -1.4677 44 1 4.2536 -2.0240 -0.2169 45 1 1.7456 -1.9939 -0.7153 46 1 2.1832 -1.7564 0.9926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348350077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:12 Heat of formation + Delta-G solvation = -22.547450 kcal Electronic energy + Delta-G solvation = -25303.087881 eV Core-core repulsion = 21770.220571 eV Total energy + Delta-G solvation = -3532.867310 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.12264 -40.54171 -38.82158 -36.40623 -35.60723 -34.78923 -32.33287 -31.87048 -31.28968 -30.37201 -27.97989 -27.16111 -25.32505 -24.52662 -23.53551 -22.79036 -22.22767 -21.20346 -19.56322 -18.37331 -17.93493 -17.32958 -16.96579 -16.88216 -16.47484 -16.28534 -15.98269 -15.61185 -15.40215 -15.15310 -14.89211 -14.75048 -14.36102 -14.28256 -14.22132 -13.56722 -13.52202 -13.35317 -12.97024 -12.91738 -12.84583 -12.80412 -12.64802 -12.52781 -12.38486 -12.18082 -11.93962 -11.89726 -11.57891 -11.50117 -11.08528 -10.82230 -10.17193 -9.71525 -9.47325 -9.38547 -9.31982 -8.66952 -6.38395 0.37537 1.00762 1.21371 1.36113 1.48078 1.50636 2.09290 2.11118 2.19133 2.78332 3.08780 3.69667 3.71683 3.86374 3.89129 4.04197 4.09507 4.13761 4.22655 4.39021 4.42821 4.56522 4.59704 4.63095 4.66487 4.72944 4.79691 4.80341 4.88774 4.92797 4.98255 4.99604 5.04136 5.08873 5.13299 5.19434 5.31182 5.41309 5.51880 5.60779 5.86415 5.92101 5.92641 6.02475 6.05453 6.09442 6.28560 6.50531 6.67932 6.87667 6.94650 7.29722 8.29862 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021573 B = 0.002589 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1297.591146 B =10812.218791 C =11324.677643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.128 4.128 3 C -0.206 4.206 4 C 0.074 3.926 5 N -0.534 5.534 6 C 0.055 3.945 7 C 0.127 3.873 8 N -0.711 5.711 9 C 0.560 3.440 10 O -0.590 6.590 11 C -0.139 4.139 12 C -0.197 4.197 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.066 3.934 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.825 5.825 20 Si 0.983 3.017 21 H -0.266 1.266 22 H -0.270 1.270 23 H -0.250 1.250 24 C -0.132 4.132 25 C 0.054 3.946 26 C -0.120 4.120 27 H 0.057 0.943 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.050 0.950 37 H 0.413 0.587 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.109 0.891 41 H 0.286 0.714 42 H 0.098 0.902 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.094 0.906 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.055 -11.609 -16.495 22.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.128 4.128 3 C -0.226 4.226 4 C -0.054 4.054 5 N -0.256 5.256 6 C -0.074 4.074 7 C 0.003 3.997 8 N -0.364 5.364 9 C 0.350 3.650 10 O -0.471 6.471 11 C -0.142 4.142 12 C -0.216 4.216 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.064 3.936 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.451 5.451 20 Si 0.804 3.196 21 H -0.191 1.191 22 H -0.194 1.194 23 H -0.173 1.173 24 C -0.152 4.152 25 C -0.074 4.074 26 C -0.158 4.158 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.123 0.877 31 H 0.113 0.887 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.251 0.749 38 H 0.155 0.845 39 H 0.158 0.842 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.112 0.888 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -8.079 -10.715 -17.021 21.675 hybrid contribution -0.577 0.797 0.745 1.234 sum -8.656 -9.918 -16.277 20.934 Atomic orbital electron populations 1.20941 0.91482 1.02487 1.02677 1.21224 0.96676 0.95041 0.99843 1.22794 0.97578 0.98190 1.04002 1.21165 0.89734 0.92257 1.02262 1.62582 1.56406 1.03357 1.03260 1.22132 0.98560 0.98818 0.87858 1.21246 1.00660 0.98971 0.78840 1.45603 1.52052 1.32924 1.05859 1.18748 0.78235 0.81047 0.86966 1.90675 1.41654 1.32705 1.82097 1.19770 1.03599 0.99715 0.91136 1.20853 1.04944 0.99500 0.96335 1.20931 0.98936 0.98829 0.92600 1.21421 1.02938 1.00410 0.98911 1.17955 0.90711 0.92665 0.92259 1.19875 1.36330 0.96814 0.99619 0.89728 1.26873 0.96538 0.98799 0.96447 1.69897 1.35526 1.14158 1.25513 0.85184 0.78016 0.77105 0.79323 1.19137 1.19419 1.17283 1.21450 1.01376 0.99373 0.93035 1.22365 0.92612 0.94323 0.98079 1.21081 0.96565 0.94966 1.03236 0.92389 0.90535 0.91396 0.87674 0.88703 0.90870 0.93096 0.88527 0.92295 0.93144 0.74906 0.84482 0.84220 0.87295 0.90329 0.88413 0.89749 0.88772 0.88788 0.90347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.55 10.02 71.24 0.71 -0.84 16 2 C -0.13 -1.99 5.23 -15.40 -0.08 -2.07 16 3 C -0.21 -3.72 8.99 26.68 0.24 -3.48 16 4 C 0.07 1.41 5.83 85.39 0.50 1.91 16 5 N -0.53 -9.98 5.03 -900.95 -4.53 -14.51 16 6 C 0.05 1.08 4.18 86.31 0.36 1.44 16 7 C 0.13 3.59 5.63 86.38 0.49 4.08 16 8 N -0.71 -22.88 5.51 -465.93 -2.57 -25.45 16 9 C 0.56 25.21 7.77 86.80 0.67 25.88 16 10 O -0.59 -31.65 16.33 -3.87 -0.06 -31.71 16 11 C -0.14 -6.65 5.87 -20.13 -0.12 -6.77 16 12 C -0.20 -7.68 9.55 22.70 0.22 -7.46 16 13 C -0.10 -3.74 10.01 22.18 0.22 -3.51 16 14 C -0.22 -10.15 9.78 22.77 0.22 -9.93 16 15 C 0.07 3.64 5.57 -21.32 -0.12 3.52 16 16 C -0.50 -27.33 9.05 23.47 0.21 -27.12 16 17 H 0.08 4.38 7.91 -2.91 -0.02 4.36 16 18 C 0.03 1.50 5.14 85.25 0.44 1.94 16 19 N -0.83 -46.74 10.96 21.83 0.24 -46.51 16 20 Si 0.98 40.16 29.59 68.60 2.03 42.19 16 21 H -0.27 -10.76 7.11 99.48 0.71 -10.05 16 22 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 24 C -0.13 -7.43 8.24 23.01 0.19 -7.24 16 25 C 0.05 0.73 6.03 86.27 0.52 1.25 16 26 C -0.12 -1.50 5.27 29.75 0.16 -1.34 16 27 H 0.06 0.78 7.62 -2.39 -0.02 0.76 16 28 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.11 1.90 7.63 -2.91 -0.02 1.87 16 31 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.07 1.64 6.01 -2.38 -0.01 1.63 16 33 H 0.05 1.00 5.99 -2.39 -0.01 0.98 16 34 H 0.10 1.62 8.09 -2.38 -0.02 1.60 16 35 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 36 H 0.05 1.59 6.33 -2.39 -0.02 1.57 16 37 H 0.41 10.50 6.49 -92.70 -0.60 9.89 16 38 H 0.14 3.98 6.38 -2.91 -0.02 3.96 16 39 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 40 H 0.11 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.29 14.95 8.30 -92.71 -0.77 14.18 16 42 H 0.10 6.16 5.74 -2.91 -0.02 6.14 16 43 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 44 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 46 H 0.08 0.98 7.13 -2.38 -0.02 0.96 16 Total: -1.00 -70.01 367.56 0.33 -69.69 By element: Atomic # 1 Polarization: 35.65 SS G_CDS: 0.39 Total: 36.04 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 4.83 Total: -29.74 kcal Atomic # 7 Polarization: -79.60 SS G_CDS: -6.86 Total: -86.46 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -0.06 Total: -31.71 kcal Atomic # 14 Polarization: 40.16 SS G_CDS: 2.03 Total: 42.19 kcal Total: -70.01 0.33 -69.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348350077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.138 kcal (2) G-P(sol) polarization free energy of solvation -70.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds